Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005716

Physical Location & Seq

Genomic Coordinates Reverse (-)

22034587 .. 22035685

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATTGTTGCTGTTCCGGGACTGAAATTACTCTCAAGATGTTGGATATGAAGACCATCTTCTTTTTCCTTGTAGGAATACCTTGTTACAGCATCCAAGAACCAGATCTTGTATGTCTTCTTCAGTTCCCCGAGACTCCGGATGTTATGGGGATGCCTTTGGAGTGCAAGTTTTGTGGTCTTGAGTTGGCTGAGTTGAAAACGTTGCCTAGAAGTAGAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAGTGGAGTGTCAAAGATTCAGGTTAAGGCTTTGCAAAAGGACAGTGAGTTTGTGAAATTCAAGGGGCGGTTATCAGATCCAATTCTTGTCTATGAAGTTTCAGGTAGAGATGGAAAAGAAGTTTGTGGTGGTTTTTTTGTAGATAAGGTTCTGGAAATGCTATCAGTGGAATTGGGCGAGTTTGTACCAAGGAAATTAGCGCCTGTTTGGCAGATTCTCTTGAGTTTTTTATACAGGGATGGTTGCTGGGCATTGGTGTCTATTTCTAATGATAGTGGTGTATTACATACTGGAATCATTAAGCCTTTTACAGTTTCTTCAGCTCTTCTGTTTATTTTGGATGAAGGATTTCACCCTGACAAAAAGGGCATGGCATTGGTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.6

Weight (kDa)

5.71

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52950 AT5G52950
fragaria_vesca	FvH4_7g30790
malus_domestica	MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1
prunus_persica	Prupe.2G305400_v2.0.a1
pyrus_communis	pycom01g22430 pycom07g25730
rosa_chinensis	RchiOBHm_Chr1g0379731
rosa_laevigata	RLG00000026358 RLG00000026362
rosa_multiflora	Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279930
rosa_rugosa	Rorug01G0415100
rosa_samantha	Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300
rosa_wichuraiana	Rw1G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	2 cut(s)	373, 688
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	107, 609
AfaI	GTAC	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	199, 367
AluBI	AGCT	2 cut(s)	221, 629
AluI	AGCT	2 cut(s)	221, 629
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	4 cut(s)	253, 285, 338, 370
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	289, 650
AvaI	CYCGRG	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbsI	GAAGAC	2 cut(s)	59, 110
BccI	CCATC	4 cut(s)	65, 221, 410, 539
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	509
BglI	GCCNNNNNGGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	102, 144
BpiI	GAAGAC	2 cut(s)	59, 110
BpuEI	CTTGAG	3 cut(s)	20, 203, 547
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	240, 494
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	1 cut(s)	601
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	240, 494
BseGI	GGATG	5 cut(s)	93, 148, 159, 550, 652
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	601
BseYI	CCCAGC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	18, 140
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	106, 382
BspACI	CCGC	2 cut(s)	373, 688
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	240, 494
BssMI	GATC	2 cut(s)	106, 382
BssT1I	CCWWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	350, 619
Bst6I	CTCTTC	2 cut(s)	275, 636
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	5 cut(s)	93, 148, 159, 550, 652
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	109, 385
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	106, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	59, 110
BstX2I	RGATCY	2 cut(s)	106, 382
BstYI	RGATCY	2 cut(s)	106, 382
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	5 cut(s)	93, 148, 159, 550, 652
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	313, 355, 477
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	491
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	3 cut(s)	250, 272, 676
CviJI	RGCY	7 cut(s)	191, 221, 231, 286, 335, 610, 629
CviKI_1	RGCY	7 cut(s)	191, 221, 231, 286, 335, 610, 629
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	108, 384
DpnII	GATC	2 cut(s)	106, 382
Eam1104I	CTCTTC	2 cut(s)	275, 636
EarI	CTCTTC	2 cut(s)	275, 636
Eco130I	CCWWGG	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	107, 609
Eco88I	CYCGRG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	253, 275, 679
FaiI	YATR	9 cut(s)	50, 115, 149, 251, 273, 399, 538, 594, 677
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	249, 271, 675
FokI	GGATG	5 cut(s)	80, 155, 166, 557, 659
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	509
HapII	CCGG	2 cut(s)	18, 140
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	3 cut(s)	253, 275, 679
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	4 cut(s)	136, 322, 520, 600
HpaII	CCGG	2 cut(s)	18, 140
HphI	GGTGA	2 cut(s)	289, 650
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	6 cut(s)	37, 140, 182, 272, 458, 526
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	350, 619
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	168, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	253, 275, 679
HspAI	GCGC	1 cut(s)	506
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	106, 382
LguI	GCTCTTC	1 cut(s)	636
LweI	GCATC	2 cut(s)	102, 144
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	108, 384
MboI	GATC	2 cut(s)	106, 382
MboII	GAAGA	7 cut(s)	52, 64, 110, 113, 292, 615, 623
MflI	RGATCY	2 cut(s)	106, 382
MluCI	AATT	5 cut(s)	27, 362, 387, 476, 500
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	3 cut(s)	260, 268, 276
MroI	TCCGGA	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	330, 606
MspI	CCGG	2 cut(s)	18, 140
MspR9I	CCNGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	106, 382
NlaIII	CATG	3 cut(s)	253, 275, 679
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	322, 520, 600
PfoI	TCCNGGA	1 cut(s)	17
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp1406I	AACGTT	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	552
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PsuI	RGATCY	2 cut(s)	106, 382
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	330, 606
Sau3AI	GATC	2 cut(s)	106, 382
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	9 cut(s)	85, 206, 223, 271, 279, 330, 412, 456, 631
SfaNI	GCATC	2 cut(s)	102, 144
SmlI	CTYRAG	3 cut(s)	35, 182, 526
SmoI	CTYRAG	3 cut(s)	35, 182, 526
Sse9I	AATT	5 cut(s)	27, 362, 387, 476, 500
SsiI	CCGC	2 cut(s)	373, 688
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	350, 619
TaiI	ACGT	1 cut(s)	206
TasI	AATT	5 cut(s)	27, 362, 387, 476, 500
TfiI	GAWTC	3 cut(s)	322, 520, 600
Tru1I	TTAA	2 cut(s)	330, 606
Tru9I	TTAA	2 cut(s)	330, 606
TscAI	CASTG	3 cut(s)	313, 355, 477
TspDTI	ATGAA	4 cut(s)	65, 266, 414, 663
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	3 cut(s)	313, 355, 477
XapI	RAATTY	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.