AT5G55500

atxylt, xylt xylt (arabidopsis thaliana beta-1,2-xylosyltransferase)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22482125 .. 22484631
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55500.1

Sequence Viewer

Length: 1605 bp
ATGAGTAAACGGAATCCGAAGATTCTGAAGATTTTTCTGTATATGTTACTTCTCAACTCTCTCTTTCTCATCATCTACTTCGTTTTTCACTCATCGTCGTTTTCACCGGAGCAGTCACAGCCTCCTCATATATACCACGTTTCAGTGAATAACCAATCGGCGATTCAGAAACCGTGGCCGATCTTACCTTCTTACCTCCCATGGACGCCGCCGCAGAGGAATCTACCAACTGGCTCCTGCGAAGGTTACTTCGGGAATGGATTTACAAAGAGAGTTGACTTCCTTAAGCCGAGGATTGGAGGAGGAGGAGAAGGAAGCTGGTTCCGATGTTTTTACAGTGAGACATTACAGAGTTCGATTTGTGAAGGAAGGAATCTGAGAATGGTTCCGGATCGGATTGTTATGTCGAGAGGAGGTGAGAAGTTAGAGGAAGTTATGGGGAGGAAAGAGGAGGAGGAGCTTCCTGCGTTTCGACAAGGTGCGTTTGAGGTAGCGGAAGAGGTTTCTTCACGGTTAGGTTTTAAGAGACACCGTCGTTTTGGTGGAGGAGAAGGAGGTAGTGCGGTTTCTCGGCGGCTGGTGAATGATGAGATGTTGAATGAATATATGCAAGAAGGTGGAATTGATAGACATACAATGAGAGATTTGGTTGCTTCGATTCGTGCTGTTGATACCAATGATTTCGTTTGTGAAGAGTGGGTGGAGGAACCGACCTTGCTTGTCACTAGATTCGAGTACGCAAATCTCTTCCATACTGTGACAGATTGGTATAGTGCCTATGTTTCGTCTAGAGTCACCGGTTTGCCTAATCGACCTCACGTTGTTTTCGTTGACGGACACTGCACGACGCAGCTAGAAGAAACATGGACAGCTTTGTTTTCCGGAATCAGATACGCAAAGAACTTCACCAAACCGGTTTGTTTCCGCCACGCGATTCTTTCACCATTGGGATACGAAACCGCTCTTTTTAAAGGCTTGTCCGGAGAAATAGACTGCAAGGGAGATTCAGCTCACAATCTGTGGCAAAACCCGGACGATAAAAGGACTGCGAGGATATCAGAGTTTGGTGAAATGATCAGAGCAGCTTTCGGGTTGCCTGTCAATAGACACCGCTCATTAGAAAAGCCGCTATCATCATCATCATCATCAGCCTCAGTTTATAATGTTCTTTTTGTCCGCCGTGAAGATTACTTAGCCCATCCTCGTCATGGCGGTAAAGTCCAGTCTCGGCTCATCAATGAGGAAGAAGTGTTCGACTCGTTGCATCATTGGGTTGCAACTGGGTCCACCGGTCTGACCAAATGCGGGATTAACCTTGTGAATGGCTTGCTTGCACACATGTCAATGAAAGATCAAGTCCGAGCCATTCAAGATGCTTCAGTGATCATAGGAGCTCATGGAGCAGGACTGACTCACATTGTCTCTGCAACACCAAACACAACGATATTTGAGATAATAAGCGTCGAGTTTCAGAGACCTCATTTCGAGCTTATAGCTAAGTGGAAAGGATTGGAGTATCACGCGATGCATCTGGCGAACTCACGAGCGGAACCAACGGCTGTGATTGAGAAGTTAACGGAGATCATGAAGAGCCTTGGCTGCTAA

Protein Analysis

534

Amino Acids

60.23

Weight (kDa)

7.33

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 376 - 482 3.7e-10 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AccBSI CCGCTC 3 cut(s) 962, 1113, 1547
AccII CGCG 2 cut(s) 932, 1523
AccIII TCCGGA 3 cut(s) 388, 881, 980
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 176
AcuI CTGAAG 2 cut(s) 47, 1362
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 1 cut(s) 737
AfiI CCNNNNNNNGG 3 cut(s) 296, 1208, 1305
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 1338
AgeI ACCGGT 3 cut(s) 797, 913, 1289
AgsI TTSAA 2 cut(s) 598, 1370
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AloI GAACNNNNNNTCC 2 cut(s) 1235, 1267
AluBI AGCT 9 cut(s) 318, 460, 853, 872, 1010, 1085, 1394, 1489, 1496
AluI AGCT 9 cut(s) 318, 460, 853, 872, 1010, 1085, 1394, 1489, 1496
Alw21I GWGCWC 1 cut(s) 1396
Alw26I GTCTC 5 cut(s) 335, 520, 1230, 1426, 1468
AlwI GGATC 1 cut(s) 399
Aor13HI TCCGGA 3 cut(s) 388, 881, 980
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 850, 1082, 1599
AsiGI ACCGGT 3 cut(s) 797, 913, 1289
AspS9I GGNCC 1 cut(s) 1284
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 7 cut(s) 96, 428, 592, 787, 898, 933, 1079
AvaII GGWCC 1 cut(s) 1284
BanII GRGCYC 1 cut(s) 1396
BauI CACGAG 1 cut(s) 1542
Bbv12I GWGCWC 1 cut(s) 1396
BbvI GCAGC 3 cut(s) 862, 1094, 1586
BccI CCATC 1 cut(s) 1206
BceAI ACGGC 2 cut(s) 1164, 1572
BciVI GTATCC 1 cut(s) 944
BclI TGATCA 2 cut(s) 1074, 1383
BcnI CCSGG 1 cut(s) 1031
BcoDI GTCTC 5 cut(s) 335, 520, 1230, 1426, 1468
BfaI CTAG 3 cut(s) 726, 789, 854
BfrI CTTAAG 1 cut(s) 284
BfuI GTATCC 1 cut(s) 944
BisI GCNGC 7 cut(s) 209, 212, 575, 851, 1083, 1127, 1600
BlsI GCNGC 7 cut(s) 210, 213, 576, 852, 1084, 1128, 1601
Bme1390I CCNGG 1 cut(s) 1031
Bme18I GGWCC 1 cut(s) 1284
BmgT120I GGNCC 1 cut(s) 1284
BmiI GGNNCC 6 cut(s) 235, 323, 387, 708, 1285, 1551
BmrFI CCNGG 1 cut(s) 1031
BmrI ACTGGG 1 cut(s) 1290
BmsI GCATC 4 cut(s) 1273, 1363, 1515, 1537
BmuI ACTGGG 1 cut(s) 1290
BpuMI CCSGG 1 cut(s) 1031
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 1468
BsaJI CCNNGG 4 cut(s) 173, 200, 290, 1594
BsaWI WCCGGW 7 cut(s) 106, 388, 797, 881, 913, 980, 1289
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 1208, 1305
Bse118I RCCGGY 3 cut(s) 797, 913, 1289
Bse1I ACTGG 3 cut(s) 235, 1222, 1285
BseAI TCCGGA 3 cut(s) 388, 881, 980
BseDI CCNNGG 4 cut(s) 173, 200, 290, 1594
BseGI GGATG 1 cut(s) 1198
BseLI CCNNNNNNNGG 3 cut(s) 296, 1208, 1305
BseMII CTCAG 2 cut(s) 368, 1167
BseNI ACTGG 3 cut(s) 235, 1222, 1285
BseRI GAGGAG 9 cut(s) 114, 315, 318, 321, 426, 464, 467, 470, 561
BseXI GCAGC 3 cut(s) 862, 1094, 1586
BsgI GTGCAG 1 cut(s) 826
Bsh1236I CGCG 2 cut(s) 932, 1523
BshFI GGCC 1 cut(s) 178
BshTI ACCGGT 3 cut(s) 797, 913, 1289
BsiHKAI GWGCWC 1 cut(s) 1396
BsiSI CCGG 8 cut(s) 107, 389, 798, 882, 914, 981, 1031, 1290
BslI CCNNNNNNNGG 3 cut(s) 296, 1208, 1305
BsmAI GTCTC 5 cut(s) 335, 520, 1230, 1426, 1468
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 1468
Bsp1286I GDGCHC 1 cut(s) 1396
Bsp13I TCCGGA 3 cut(s) 388, 881, 980
Bsp143I GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
Bsp19I CCATGG 1 cut(s) 200
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 369, 1166
BspEI TCCGGA 3 cut(s) 388, 881, 980
BspFNI CGCG 2 cut(s) 932, 1523
BspHI TCATGA 1 cut(s) 1584
BspLI GGNNCC 6 cut(s) 235, 323, 387, 708, 1285, 1551
BspPI GGATC 1 cut(s) 399
BspQI GCTCTTC 1 cut(s) 1583
BspTI CTTAAG 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 1468
BsrBI CCGCTC 3 cut(s) 962, 1113, 1547
BsrFI RCCGGY 3 cut(s) 797, 913, 1289
BsrI ACTGG 3 cut(s) 235, 1222, 1285
BssAI RCCGGY 3 cut(s) 797, 913, 1289
BssECI CCNNGG 4 cut(s) 173, 200, 290, 1594
BssMI GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
BssNI GRCGYC 1 cut(s) 206
BssSI CACGAG 1 cut(s) 1542
BssT1I CCWWGG 2 cut(s) 200, 1594
Bst2BI CACGAG 1 cut(s) 1542
Bst4CI ACNGT 5 cut(s) 174, 338, 513, 533, 757
Bst6I CTCTTC 4 cut(s) 492, 687, 752, 1583
BstACI GRCGYC 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 1328, 1332
BstDEI CTNAG 4 cut(s) 377, 1153, 1192, 1497
BstDSI CCRYGG 2 cut(s) 173, 200
BstF5I GGATG 1 cut(s) 1198
BstFNI CGCG 2 cut(s) 932, 1523
BstKTI GATC 6 cut(s) 183, 394, 1077, 1354, 1386, 1584
BstMAI GTCTC 5 cut(s) 335, 520, 1230, 1426, 1468
BstMBI GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
BstMWI GCNNNNNNNGC 3 cut(s) 118, 1400, 1599
BstNSI RCATGY 1 cut(s) 1342
BstSCI CCNGG 1 cut(s) 1029
BstUI CGCG 2 cut(s) 932, 1523
BstV1I GCAGC 3 cut(s) 862, 1094, 1586
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 2 cut(s) 173, 200
BtgZI GCGATG 1 cut(s) 1538
BtsCI GGATG 1 cut(s) 1198
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 4 cut(s) 150, 343, 838, 1386
Cac8I GCNNGC 2 cut(s) 1328, 1332
CciI TCATGA 1 cut(s) 1584
Cfr10I RCCGGY 3 cut(s) 797, 913, 1289
Cfr13I GGNCC 1 cut(s) 1284
CseI GACGC 3 cut(s) 214, 856, 1450
Csp6I GTAC 1 cut(s) 736
CspAI ACCGGT 3 cut(s) 797, 913, 1289
CviAII CATG 6 cut(s) 201, 864, 1208, 1339, 1397, 1585
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 4 cut(s) 377, 1153, 1192, 1497
DpnI GATC 6 cut(s) 182, 393, 1076, 1353, 1385, 1583
DpnII GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
DraI TTTAAA 1 cut(s) 970
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 4 cut(s) 492, 687, 752, 1583
EarI CTCTTC 4 cut(s) 492, 687, 752, 1583
EciI GGCGGA 2 cut(s) 914, 1166
Ecl136II GAGCTC 1 cut(s) 1394
Eco130I CCWWGG 2 cut(s) 200, 1594
Eco24I GRGCYC 1 cut(s) 1396
Eco31I GGTCTC 1 cut(s) 1468
Eco32I GATATC 1 cut(s) 1056
Eco47I GGWCC 1 cut(s) 1284
Eco53kI GAGCTC 1 cut(s) 1394
Eco57I CTGAAG 2 cut(s) 47, 1362
EcoICRI GAGCTC 1 cut(s) 1394
EcoRV GATATC 1 cut(s) 1056
EcoT14I CCWWGG 2 cut(s) 200, 1594
EcoT22I ATGCAT 1 cut(s) 1530
EcoT38I GRGCYC 1 cut(s) 1396
ErhI CCWWGG 2 cut(s) 200, 1594
FaeI CATG 6 cut(s) 204, 867, 1211, 1342, 1400, 1588
FatI CATG 6 cut(s) 200, 863, 1207, 1338, 1396, 1584
FauI CCCGC 1 cut(s) 1298
FbaI TGATCA 2 cut(s) 1074, 1383
Fnu4HI GCNGC 7 cut(s) 209, 212, 575, 851, 1083, 1127, 1600
FokI GGATG 1 cut(s) 1185
FriOI GRGCYC 1 cut(s) 1396
Fsp4HI GCNGC 7 cut(s) 209, 212, 575, 851, 1083, 1127, 1600
FspBI CTAG 3 cut(s) 726, 789, 854
GluI GCNGC 7 cut(s) 209, 212, 575, 851, 1083, 1127, 1600
HaeIII GGCC 1 cut(s) 178
HapII CCGG 8 cut(s) 107, 389, 798, 882, 914, 981, 1031, 1290
HgaI GACGC 3 cut(s) 214, 856, 1450
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 6 cut(s) 204, 867, 1211, 1342, 1400, 1588
HincII GTYRAC 3 cut(s) 277, 832, 1575
HindII GTYRAC 3 cut(s) 277, 832, 1575
HpaI GTTAAC 1 cut(s) 1575
HpaII CCGG 8 cut(s) 107, 389, 798, 882, 914, 981, 1031, 1290
HphI GGTGA 7 cut(s) 96, 428, 592, 787, 898, 933, 1079
Hpy166II GTNNAC 5 cut(s) 8, 277, 832, 1287, 1575
Hpy188III TCNNGA 9 cut(s) 253, 389, 408, 789, 882, 981, 1370, 1542, 1585
Hpy8I GTNNAC 5 cut(s) 8, 277, 832, 1287, 1575
Hpy99I CGWCG 4 cut(s) 100, 537, 850, 1466
HpyAV CCTTC 7 cut(s) 198, 236, 305, 359, 363, 545, 608
HpyCH4III ACNGT 5 cut(s) 174, 338, 513, 533, 757
HpyCH4IV ACGT 2 cut(s) 138, 819
HpyCH4V TGCA 8 cut(s) 610, 843, 996, 1264, 1277, 1334, 1427, 1528
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 1400, 1599
HpyF3I CTNAG 4 cut(s) 377, 1153, 1192, 1497
HpySE526I ACGT 2 cut(s) 138, 819
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 6 cut(s) 204, 867, 1211, 1342, 1400, 1588
Kpn2I TCCGGA 3 cut(s) 388, 881, 980
Ksp22I TGATCA 2 cut(s) 1074, 1383
KspAI GTTAAC 1 cut(s) 1575
Kzo9I GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
LguI GCTCTTC 1 cut(s) 1583
LmnI GCTCC 5 cut(s) 109, 239, 457, 1391, 1400
Lsp1109I GCAGC 3 cut(s) 862, 1094, 1586
LweI GCATC 4 cut(s) 1273, 1363, 1515, 1537
MaeI CTAG 3 cut(s) 726, 789, 854
MaeII ACGT 2 cut(s) 138, 819
MaeIII GTNAC 6 cut(s) 45, 114, 245, 721, 757, 793
MalI GATC 6 cut(s) 182, 393, 1076, 1353, 1385, 1583
MbiI CCGCTC 3 cut(s) 962, 1113, 1547
MboI GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
MhlI GDGCHC 1 cut(s) 1396
MluCI AATT 1 cut(s) 621
MlyI GAGTC 3 cut(s) 801, 1250, 1405
Mph1103I ATGCAT 1 cut(s) 1530
MroI TCCGGA 3 cut(s) 388, 881, 980
MseI TTAA 5 cut(s) 285, 522, 969, 1311, 1574
MslI CAYNNNNRTG 1 cut(s) 1343
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 8 cut(s) 107, 389, 798, 882, 914, 981, 1031, 1290
MspR9I CCNGG 1 cut(s) 1031
MvnI CGCG 2 cut(s) 932, 1523
MwoI GCNNNNNNNGC 3 cut(s) 118, 1400, 1599
NciI CCSGG 1 cut(s) 1031
NcoI CCATGG 1 cut(s) 200
NdeII GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
NlaIII CATG 6 cut(s) 204, 867, 1211, 1342, 1400, 1588
NlaIV GGNNCC 6 cut(s) 235, 323, 387, 708, 1285, 1551
NmeAIII GCCGAG 3 cut(s) 315, 550, 1207
NmuCI GTSAC 4 cut(s) 114, 721, 757, 793
NsiI ATGCAT 1 cut(s) 1530
NspI RCATGY 1 cut(s) 1342
PagI TCATGA 1 cut(s) 1584
PciI ACATGT 1 cut(s) 1338
PciSI GCTCTTC 1 cut(s) 1583
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PflFI GACNNNGTC 1 cut(s) 531
PinAI ACCGGT 3 cut(s) 797, 913, 1289
PkrI GCNGC 7 cut(s) 210, 213, 576, 852, 1084, 1128, 1601
PleI GAGTC 3 cut(s) 800, 1250, 1405
PpsI GAGTC 3 cut(s) 800, 1250, 1405
PscI ACATGT 1 cut(s) 1338
PsiI TTATAA 1 cut(s) 1161
Psp124BI GAGCTC 1 cut(s) 1396
PspN4I GGNNCC 6 cut(s) 235, 323, 387, 708, 1285, 1551
PspPI GGNCC 1 cut(s) 1284
PsyI GACNNNGTC 1 cut(s) 531
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
RseI CAYNNNNRTG 1 cut(s) 1343
SacI GAGCTC 1 cut(s) 1396
SapI GCTCTTC 1 cut(s) 1583
SaqAI TTAA 5 cut(s) 285, 522, 969, 1311, 1574
SatI GCNGC 7 cut(s) 209, 212, 575, 851, 1083, 1127, 1600
Sau3AI GATC 6 cut(s) 180, 391, 1074, 1351, 1383, 1581
Sau96I GGNCC 1 cut(s) 1284
SchI GAGTC 3 cut(s) 801, 1250, 1405
ScrFI CCNGG 1 cut(s) 1031
SduI GDGCHC 1 cut(s) 1396
SfaNI GCATC 4 cut(s) 1273, 1363, 1515, 1537
SinI GGWCC 1 cut(s) 1284
SmiMI CAYNNNNRTG 1 cut(s) 1343
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 621
SspMI CTAG 3 cut(s) 726, 789, 854
SstI GAGCTC 1 cut(s) 1396
StyD4I CCNGG 1 cut(s) 1029
StyI CCWWGG 2 cut(s) 200, 1594
TaaI ACNGT 5 cut(s) 174, 338, 513, 533, 757
TaiI ACGT 2 cut(s) 141, 822
TaqI TCGA 9 cut(s) 356, 407, 472, 656, 732, 811, 1254, 1464, 1485
TasI AATT 1 cut(s) 621
TauI GCSGC 4 cut(s) 211, 214, 577, 1129
Tru1I TTAA 5 cut(s) 285, 522, 969, 1311, 1574
Tru9I TTAA 5 cut(s) 285, 522, 969, 1311, 1574
TscAI CASTG 4 cut(s) 150, 343, 845, 1386
TseFI GTSAC 4 cut(s) 114, 721, 757, 793
TseI GCWGC 3 cut(s) 850, 1082, 1599
Tsp45I GTSAC 4 cut(s) 114, 721, 757, 793
TspDTI ATGAA 3 cut(s) 615, 1361, 1601
TspGWI ACGGA 3 cut(s) 25, 849, 1592
TspRI CASTG 4 cut(s) 150, 343, 845, 1386
Tth111I GACNNNGTC 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 1284
XbaI TCTAGA 1 cut(s) 788
XceI RCATGY 1 cut(s) 1342
XcmI CCANNNNNNNNNTGG 1 cut(s) 1205
XspI CTAG 3 cut(s) 726, 789, 854
Zsp2I ATGCAT 1 cut(s) 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.