Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

85723299 .. 85725066

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTGCCGGAGAGGGTGAAGATGCCGATTGGCGGCAAAGTTTTGGAGGATGTGATTGGGAGAGGGGAGGAGGAGGAGGAGGAGTTGCCTGAGTTTCGAATCGATTCGGTTATTTTCCAGATGAAGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCCTTAGATATGCGAAAAACTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAGACTGCATGGTTTAAGGGGCTCACTGAAGATATAAAGTGTGAGGGAGCTTCTGCACCAGAGCTTTGGCAGCACCCTGATGACCAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCAAAGGCAGCATATTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGGCGTGAAGATTATCGACCGCATCCACGTCACGGTGGTCTCACGCATATAGTATCTGCATCGCCGAAAACTGTGGTTCTGGAGACTATTAGCAGCCAATATAGACAGCCACATTTTGCTTTAATTGCCCAGTGGAAGGGGTTGGAATATCATGCCATTAATCTTGGGGGTTTGTATGCCTCTTGGTCAGTTGTTATTGACAACCTTAGCCGTATACTGAGGACCCTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

223

Amino Acids

25.23

Weight (kDa)

6.46

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	646
AciI	CCGC	2 cut(s)	33, 452
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	32, 464, 568
AjiI	CACGTC	1 cut(s)	461
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	284, 298, 362
AluI	AGCT	3 cut(s)	284, 298, 362
Alw26I	GTCTC	4 cut(s)	230, 419, 476, 509
ApeKI	GCWGC	4 cut(s)	304, 362, 388, 525
ApoI	RAATTY	1 cut(s)	372
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	191, 654
AsuHPI	GGTGA	2 cut(s)	28, 213
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	191, 654
AxyI	CCTNAGG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	316, 349, 400, 537
BceAI	ACGGC	1 cut(s)	627
BcoDI	GTCTC	4 cut(s)	230, 419, 476, 509
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	5 cut(s)	34, 305, 363, 389, 526
BlsI	GCNGC	5 cut(s)	35, 306, 364, 390, 527
Bme18I	GGWCC	2 cut(s)	191, 654
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	191, 654
BmiI	GGNNCC	2 cut(s)	6, 656
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	3 cut(s)	12, 463, 500
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu14I	TTCGAA	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	102
BsaI	GGTCTC	2 cut(s)	419, 476
BsaJI	CCNNGG	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 464, 568
Bse1I	ACTGG	3 cut(s)	194, 377, 562
Bse21I	CCTNAGG	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	2 cut(s)	55, 454
BseLI	CCNNNNNNNGG	3 cut(s)	32, 464, 568
BseMII	CTCAG	4 cut(s)	81, 330, 423, 641
BseNI	ACTGG	3 cut(s)	194, 377, 562
BseRI	GAGGAG	5 cut(s)	83, 86, 89, 92, 95
BseXI	GCAGC	4 cut(s)	316, 349, 400, 537
BsgI	GTGCAG	2 cut(s)	273, 312
Bsh1285I	CGRYCG	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	32, 464, 568
BsmAI	GTCTC	4 cut(s)	230, 419, 476, 509
Bso31I	GGTCTC	2 cut(s)	419, 476
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	33, 452
BspCNI	CTCAG	4 cut(s)	82, 331, 422, 642
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	6, 656
BspT104I	TTCGAA	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	419, 476
BsrI	ACTGG	3 cut(s)	194, 377, 562
BssECI	CCNNGG	1 cut(s)	658
BssNAI	GTATAC	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	658
Bst1107I	GTATAC	1 cut(s)	647
Bst4CI	ACNGT	3 cut(s)	336, 467, 505
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	6 cut(s)	90, 167, 339, 409, 638, 650
BstF5I	GGATG	2 cut(s)	55, 454
BstMAI	GTCTC	4 cut(s)	230, 419, 476, 509
BstMCI	CGRYCG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 388, 557
BstV1I	GCAGC	4 cut(s)	316, 349, 400, 537
BstV2I	GAAGAC	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstZ17I	GTATAC	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	409
BsuTUI	ATCGAT	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	55, 454
BtsIMutI	CAGTG	3 cut(s)	258, 384, 569
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	191, 654
ClaI	ATCGAT	1 cut(s)	102
CviAII	CATG	4 cut(s)	144, 209, 243, 584
CviJI	RGCY	9 cut(s)	165, 256, 284, 298, 362, 407, 528, 541, 642
CviKI_1	RGCY	9 cut(s)	165, 256, 284, 298, 362, 407, 528, 541, 642
DdeI	CTNAG	6 cut(s)	90, 167, 339, 409, 638, 650
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	2 cut(s)	419, 476
Eco47I	GGWCC	2 cut(s)	191, 654
Eco57I	CTGAAG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	4 cut(s)	147, 212, 246, 587
FatI	CATG	4 cut(s)	143, 208, 242, 583
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	34, 305, 363, 389, 526
FokI	GGATG	2 cut(s)	62, 441
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	34, 305, 363, 389, 526
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	5 cut(s)	34, 305, 363, 389, 526
GsuI	CTGGAG	1 cut(s)	533
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	4 cut(s)	147, 212, 246, 587
HinfI	GANTC	2 cut(s)	99, 104
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	28, 213
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	118, 512
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	3 cut(s)	336, 467, 505
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	242, 290, 329, 382, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 388, 557
HpyF3I	CTNAG	6 cut(s)	90, 167, 339, 409, 638, 650
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	4 cut(s)	147, 212, 246, 587
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	4 cut(s)	316, 349, 400, 537
LweI	GCATC	3 cut(s)	12, 463, 500
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	461
MboII	GAAGA	5 cut(s)	31, 136, 149, 275, 452
MfeI	CAATTG	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	131, 372, 555
MmeI	TCCRAC	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	249, 554, 591
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	304, 388, 557
NlaIII	CATG	4 cut(s)	147, 212, 246, 587
NlaIV	GGNNCC	2 cut(s)	6, 656
NmuCI	GTSAC	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	99, 104
PkrI	GCNGC	5 cut(s)	35, 306, 364, 390, 527
PpuMI	RGGWCCY	1 cut(s)	654
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	6, 656
PspPI	GGNCC	2 cut(s)	191, 654
PspPPI	RGGWCCY	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	249, 554, 591
SatI	GCNGC	5 cut(s)	34, 305, 363, 389, 526
Sau96I	GGNCC	2 cut(s)	191, 654
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	226, 286, 300, 364, 415, 463, 639
SfaNI	GCATC	3 cut(s)	12, 463, 500
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	2 cut(s)	191, 654
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	3 cut(s)	131, 372, 555
SsiI	CCGC	2 cut(s)	33, 452
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	336, 467, 505
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	97, 102, 448
TasI	AATT	3 cut(s)	131, 372, 555
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	99, 104
Tru1I	TTAA	3 cut(s)	249, 554, 591
Tru9I	TTAA	3 cut(s)	249, 554, 591
TscAI	CASTG	3 cut(s)	265, 384, 569
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	4 cut(s)	304, 362, 388, 525
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	3 cut(s)	265, 384, 569
VpaK11BI	GGWCC	2 cut(s)	191, 654
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.