Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Forward (+)

35423320 .. 35424120

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCCTTGATTATATATTCTGTCGGAATGCTGGTCCAATCTCCTGTTTCTGATCTCTCTTGCATTGGTCATTTTCAGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTTGCATTAGATATGCGAAAAACTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAAACTGCATGGTTTAAGGGGCTCACTGAAGATATAGCGTGTGAGGGAGCTTCTGCACCAGAGCTGTGGCAACACCCTGATGACAAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCGTAGGCAGCGTAGTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGCCGTGAAGATTATCTACCGCATCCACGTCACGGTGGTAAAGTTGAATCAAGGTTAAGCAACGAACAAGAAGTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAATGCAAAATAAACTTAGTGAACGGATTGTTTGCATACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCACGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGATCATTAGCAGCCAATATAGACGGCCACATTTTGCTTTAGTTGCCCAGTGGAAAGGGTTGGAATATCATGCCATTAATCTTGCGGGTTTGTATGCCTCTCCGTCAGTTGTTATTGACAACCTTAGCCGTATACTGAGGACCCTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

8.7

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	124 - 215	1.3e-11	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	778
AciI	CCGC	2 cut(s)	404, 731
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	431, 566
AjiI	CACGTC	1 cut(s)	413
AluBI	AGCT	4 cut(s)	236, 250, 314, 477
AluI	AGCT	4 cut(s)	236, 250, 314, 477
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	371, 608
AoxI	GGCC	3 cut(s)	3, 558, 671
ApeKI	GCWGC	3 cut(s)	314, 340, 657
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AseI	ATTAAT	1 cut(s)	723
AspS9I	GGNCC	4 cut(s)	34, 143, 558, 786
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	3 cut(s)	34, 143, 786
AxyI	CCTNAGG	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	301, 352, 669
BceAI	ACGGC	3 cut(s)	372, 686, 759
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	2 cut(s)	371, 608
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	315, 341, 658
BlsI	GCNGC	3 cut(s)	316, 342, 659
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	3 cut(s)	34, 143, 786
BmgBI	CACGTC	1 cut(s)	413
BmgT120I	GGNCC	4 cut(s)	34, 143, 558, 786
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	3 cut(s)	415, 454, 559
BmuI	ACTGGG	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	665
Bpu10I	CCTNAGC	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	557
BsaI	GGTCTC	2 cut(s)	371, 608
BsaJI	CCNNGG	2 cut(s)	636, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	146, 329, 694
Bse21I	CCTNAGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	636, 790
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	282, 375, 773
BseNI	ACTGG	3 cut(s)	146, 329, 694
BseXI	GCAGC	3 cut(s)	301, 352, 669
BseYI	CCCAGC	1 cut(s)	477
BsgI	GTGCAG	3 cut(s)	225, 264, 618
BshFI	GGCC	3 cut(s)	5, 560, 673
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	371, 608
BsmI	GAATGC	2 cut(s)	33, 503
BsnI	GGCC	3 cut(s)	5, 560, 673
Bso31I	GGTCTC	2 cut(s)	371, 608
Bsp1286I	GDGCHC	2 cut(s)	210, 592
Bsp143I	GATC	2 cut(s)	52, 648
BspACI	CCGC	2 cut(s)	404, 731
BspANI	GGCC	3 cut(s)	5, 560, 673
BspCNI	CTCAG	3 cut(s)	283, 374, 774
BspLI	GGNNCC	1 cut(s)	788
BspMI	ACCTGC	1 cut(s)	590
BspTNI	GGTCTC	2 cut(s)	371, 608
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	146, 329, 694
BssECI	CCNNGG	2 cut(s)	636, 790
BssMI	GATC	2 cut(s)	52, 648
BssNAI	GTATAC	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	790
Bst1107I	GTATAC	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	288, 419, 637
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	291, 361, 511, 770, 782
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	2 cut(s)	55, 651
BstMAI	GTCTC	2 cut(s)	371, 608
BstMBI	GATC	2 cut(s)	52, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 596, 689
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	301, 352, 669
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstZ17I	GTATAC	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	5, 560, 673
BtgI	CCRYGG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	3 cut(s)	210, 336, 701
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	4 cut(s)	34, 143, 558, 786
CviAII	CATG	6 cut(s)	96, 161, 195, 535, 593, 716
DdeI	CTNAG	5 cut(s)	291, 361, 511, 770, 782
DpnI	GATC	2 cut(s)	54, 650
DpnII	GATC	2 cut(s)	52, 648
EaeI	YGGCCR	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	2 cut(s)	371, 608
Eco47I	GGWCC	3 cut(s)	34, 143, 786
Eco57I	CTGAAG	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRI	GAATTC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	790
FaeI	CATG	6 cut(s)	99, 164, 198, 538, 596, 719
FatI	CATG	6 cut(s)	95, 160, 194, 534, 592, 715
FauI	CCCGC	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	315, 341, 658
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	315, 341, 658
GluI	GCNGC	3 cut(s)	315, 341, 658
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	3 cut(s)	5, 560, 673
HapII	CCGG	1 cut(s)	556
Hin1II	CATG	6 cut(s)	99, 164, 198, 538, 596, 719
HinfI	GANTC	2 cut(s)	431, 487
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	517, 779
Hpy188I	TCNGA	4 cut(s)	26, 52, 78, 292
Hpy188III	TCNNGA	2 cut(s)	566, 644
Hpy8I	GTNNAC	2 cut(s)	517, 779
HpyCH4III	ACNGT	3 cut(s)	288, 419, 637
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	63, 117, 194, 242, 281, 501, 530, 599, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 596, 689
HpyF3I	CTNAG	5 cut(s)	291, 361, 511, 770, 782
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	99, 164, 198, 538, 596, 719
Kzo9I	GATC	2 cut(s)	52, 648
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	301, 352, 669
LweI	GCATC	3 cut(s)	415, 454, 559
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	54, 650
MboI	GATC	2 cut(s)	52, 648
MboII	GAAGA	3 cut(s)	101, 227, 404
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	210, 592
MluCI	AATT	2 cut(s)	83, 324
MmeI	TCCRAC	2 cut(s)	4, 687
MnlI	CCTC	5 cut(s)	186, 223, 370, 754, 777
MseI	TTAA	4 cut(s)	201, 440, 470, 723
MslI	CAYNNNNRTG	2 cut(s)	264, 539
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	2 cut(s)	33, 503
MwoI	GCNNNNNNNGC	3 cut(s)	340, 596, 689
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	52, 648
NlaIII	CATG	6 cut(s)	99, 164, 198, 538, 596, 719
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	538
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	2 cut(s)	33, 503
PfeI	GAWTC	2 cut(s)	431, 487
PkrI	GCNGC	3 cut(s)	316, 342, 659
PpuMI	RGGWCCY	1 cut(s)	786
PscI	ACATGT	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	786
PspFI	CCCAGC	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	4 cut(s)	34, 143, 558, 786
PspPPI	RGGWCCY	1 cut(s)	786
RseI	CAYNNNNRTG	2 cut(s)	264, 539
SaqAI	TTAA	4 cut(s)	201, 440, 470, 723
SatI	GCNGC	3 cut(s)	315, 341, 658
Sau3AI	GATC	2 cut(s)	52, 648
Sau96I	GGNCC	4 cut(s)	34, 143, 558, 786
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	2 cut(s)	210, 592
SfaNI	GCATC	3 cut(s)	415, 454, 559
SinI	GGWCC	3 cut(s)	34, 143, 786
SmiMI	CAYNNNNRTG	2 cut(s)	264, 539
Sse9I	AATT	2 cut(s)	83, 324
SsiI	CCGC	2 cut(s)	404, 731
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	3 cut(s)	288, 419, 637
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	485, 539
TasI	AATT	2 cut(s)	83, 324
TfiI	GAWTC	2 cut(s)	431, 487
Tru1I	TTAA	4 cut(s)	201, 440, 470, 723
Tru9I	TTAA	4 cut(s)	201, 440, 470, 723
TscAI	CASTG	3 cut(s)	217, 336, 701
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	3 cut(s)	314, 340, 657
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	201, 557
TspGWI	ACGGA	2 cut(s)	534, 738
TspRI	CASTG	3 cut(s)	217, 336, 701
VpaK11BI	GGWCC	3 cut(s)	34, 143, 786
VspI	ATTAAT	1 cut(s)	723
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	538
XmiI	GTMKAC	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.