Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

56066595 .. 56079850

Gene Structure 13256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGATGCGAGAGCTTGCAGGAGAAGATGAGCGAGCGCGGATGAATACGAGAGCGCTCGGGAGAAGACGAGCGCGAGCGGGAGAAAGCGAGCACGCACGGGAGAAGGAGAGCACGCGCAGGAGAAGAGGAGCGCCCGAGGGAGAAGACGAACGAGCGCGGGTGAATATGAGAGCGCGCGGGAGACGAGAAGCGCTGCGCGGGAGAAGACGAGCGAGCGCGGGTGAATACGAGAGCGCGCGGGTGAAGAAGAGTGCGAGCGGGTGCACGGGGCTCGGCAGGTGCACTCGGGGGGCAGGATTTTCCGACGACCGTTCGGATTCCTTGAGGCTAGGTTTTAAGTTTGAACAACTCTTATTGTATTCGATCACTTTCCTCCTTGATCCTCCCATCCACCGCAACATAATTGAAGATGCATCGACATTTCACTCCAAGGATTACTTTTTCCTCCCTAAGAAGTTGCCTCATCACCCCAACGTCATGGTGACTTCATTCGCAGAGCATGAAGGATTCTCAGGTGGAGGTTTTGGTCACTGTAGAGGTATTGTTCACTCGGAAATGCCTGCAGCCCAAGGAACCCAAATGGGTCTACAGTTGATTGAGCCAAAGTACCAAGAAATGGTCAGCAAGGACATTGCAGAGGCCACAAAAGATGGGATCAAGATTACAGATTCTGATGGTTTGATCTACAAATCTCAAGGTCGTGACAATAGTTTTATTGTTGGTAATTATCTTGAGGAAGCTGAGGATTTACCTTTAGTTTCTGCTAGATTCCGGCAGCTGGTTCCGCTGCGCGTTCAGCGAGACCCTGAGGAGCTCGGTGTGCGAGGGAGGGGGATCCGGATGGTGCCGGAGAGGGTGAAGATGTCGATCGGCGGCGAGGTTTTGGAGGATGTGATTGGGAGAGGGGAAGAGGAGGAGTTGCCGGAGTTTCGAAACGGTGCGTTTGAGGTCGATGGTGGGGTTGGTGGAGGAGGAGAGGAGAGAGGGCTTGTGAGTAGAGAGTTTCTTGATGAGTATGTGCCGCGTGGTGAGATTGGGAAGCATACTATGAGGGAGCTGATCGCGTCGATTCGGGTCGTGCCCAGCAAAGAGTTTCAGTGCAGTGTGTGGATTGAGGAGCCAACGCTTCTGGTGACACGGTTTGAGTATGCAAATGTTTTCCACACATTCACGGATTGGTATAGCGGTTACGTAGCTTCCAGAGTCACTGACTTACCTAGCCGGCCTCATGTTGTCTTTGTAGATGGCCATTGTAGGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCATTAGATATGCGAAAAACTTTAGTGGTTCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAAACTGCATGGTTTAAGGGGCTCACTGAAGATATAGCGTGTGAGGGAGCTTCTGCACCAGAGCTGTGGCAACACCCTGATGACAAGAAAACTGCACGACTGTCTGAATTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCATAGGCAGCGTATTGAGAAGCAAGCATCAGGTCTCAATATCCTTTTTGTTCGCCGTGAAGATTATCTACCGCATCCACGTCACGGTGGTAAAGTTGAATCAAGGTTAAGCAACGAACAAGAAGTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAATGCAAAATAAACTTAGTGAACGGATTGTTTGCACACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCACGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGATCATTAGCAGCCAATATAGACGGCCACATTTTGCTTTAATTGCCCAGTGGAAAGGGTTGGAATATCATGCCATTAATCTTGCGGGTTTGTATGCCTCTCCGTCAATTGTTATTGACAACCTTAGCCGTATACTGAGGACCCTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

659

Amino Acids

74.09

Weight (kDa)

8.26

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	348 - 608	7.5e-12	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
Acc36I	ACCTGC	2 cut(s)	267, 1769
AccB1I	GGYRCC	1 cut(s)	844
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccBSI	CCGCTC	2 cut(s)	77, 258
AccI	GTMKAC	2 cut(s)	586, 1957
AccIII	TCCGGA	1 cut(s)	837
AclWI	GGATC	4 cut(s)	374, 662, 829, 842
AcoI	YGGCCR	2 cut(s)	1246, 1850
AcsI	RAATTY	2 cut(s)	1472, 1503
AcuI	CTGAAG	1 cut(s)	1413
AfaI	GTAC	1 cut(s)	608
AfeI	AGCGCT	2 cut(s)	54, 192
AfiI	CCNNNNNNNGG	3 cut(s)	616, 778, 1595
AflIII	ACRYGT	1 cut(s)	1713
AgsI	TTSAA	4 cut(s)	344, 407, 1610, 1745
AjiI	CACGTC	1 cut(s)	1592
Alw21I	GWGCWC	6 cut(s)	93, 113, 266, 284, 816, 1771
Alw26I	GTCTC	4 cut(s)	175, 795, 1550, 1787
Alw44I	GTGCAC	2 cut(s)	262, 280
AlwI	GGATC	4 cut(s)	374, 662, 829, 842
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	3 cut(s)	56, 134, 285
Aor13HI	TCCGGA	1 cut(s)	837
Aor51HI	AGCGCT	2 cut(s)	54, 192
AoxI	GGCC	5 cut(s)	639, 1223, 1246, 1737, 1850
ApaLI	GTGCAC	2 cut(s)	262, 280
ApeKI	GCWGC	7 cut(s)	193, 563, 775, 787, 1493, 1519, 1836
ApoI	RAATTY	2 cut(s)	1472, 1503
ArsI	GACNNNNNNTTYG	2 cut(s)	1620, 1652
AseI	ATTAAT	1 cut(s)	1902
AspS9I	GGNCC	2 cut(s)	1737, 1965
AsuC2I	CCSGG	1 cut(s)	1736
AsuHPI	GGTGA	9 cut(s)	172, 233, 253, 458, 493, 868, 1040, 1144, 1344
AsuII	TTCGAA	1 cut(s)	931
AvaI	CYCGRG	3 cut(s)	56, 134, 285
AvaII	GGWCC	1 cut(s)	1965
AxyI	CCTNAGG	1 cut(s)	807
BaeGI	GKGCMC	3 cut(s)	266, 284, 1083
BalI	TGGCCA	1 cut(s)	1248
BamHI	GGATCC	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	844
BanII	GRGCYC	3 cut(s)	273, 816, 1389
BarI	GAAGNNNNNNTAC	2 cut(s)	1563, 1595
BbsI	GAAGAC	3 cut(s)	70, 150, 211
Bbv12I	GWGCWC	6 cut(s)	93, 113, 266, 284, 816, 1771
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	7 cut(s)	180, 575, 774, 787, 1480, 1531, 1848
BccI	CCATC	6 cut(s)	395, 644, 668, 835, 947, 1238
BceAI	ACGGC	3 cut(s)	1551, 1865, 1938
BcgI	CGANNNNNNTGC	4 cut(s)	253, 287, 1698, 1732
BcnI	CCSGG	1 cut(s)	1736
BcoDI	GTCTC	4 cut(s)	175, 795, 1550, 1787
BfaI	CTAG	4 cut(s)	329, 765, 1218, 1293
BfmI	CTRYAG	3 cut(s)	532, 561, 587
BfoI	RGCGCY	3 cut(s)	56, 134, 194
BfuAI	ACCTGC	2 cut(s)	267, 1769
BisI	GCNGC	9 cut(s)	194, 564, 776, 788, 874, 1022, 1494, 1520, 1837
BlsI	GCNGC	9 cut(s)	195, 565, 777, 789, 875, 1023, 1495, 1521, 1838
Bme1390I	CCNGG	1 cut(s)	1736
Bme18I	GGWCC	1 cut(s)	1965
BmeT110I	CYCGRG	3 cut(s)	56, 134, 285
BmgBI	CACGTC	1 cut(s)	1592
BmgT120I	GGNCC	2 cut(s)	1737, 1965
BmiI	GGNNCC	6 cut(s)	574, 783, 836, 846, 1119, 1967
BmrFI	CCNGG	1 cut(s)	1736
BmrI	ACTGGG	1 cut(s)	1867
BmsI	GCATC	6 cut(s)	400, 422, 1547, 1594, 1633, 1738
BmuI	ACTGGG	1 cut(s)	1867
BpiI	GAAGAC	3 cut(s)	70, 150, 211
BpmI	CTGGAG	1 cut(s)	1844
Bpu10I	CCTNAGC	2 cut(s)	741, 1949
Bpu14I	TTCGAA	1 cut(s)	931
BpuEI	CTTGAG	3 cut(s)	343, 678, 752
BpuMI	CCSGG	1 cut(s)	1736
BsaAI	YACGTR	1 cut(s)	1192
BsaBI	GATNNNNATC	1 cut(s)	866
BsaI	GGTCTC	3 cut(s)	795, 1550, 1787
BsaJI	CCNNGG	5 cut(s)	135, 429, 568, 1815, 1969
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	3 cut(s)	616, 778, 1595
Bse118I	RCCGGY	1 cut(s)	1221
Bse1I	ACTGG	2 cut(s)	1508, 1873
Bse21I	CCTNAGG	1 cut(s)	807
Bse3DI	GCAATG	2 cut(s)	630, 1802
Bse8I	GATNNNNATC	1 cut(s)	866
BseAI	TCCGGA	1 cut(s)	837
BseDI	CCNNGG	5 cut(s)	135, 429, 568, 1815, 1969
BseGI	GGATG	5 cut(s)	45, 387, 846, 895, 1585
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	3 cut(s)	616, 778, 1595
BseMI	GCAATG	2 cut(s)	630, 1802
BseMII	CTCAG	4 cut(s)	525, 732, 798, 1952
BseNI	ACTGG	2 cut(s)	1508, 1873
BsePI	GCGCGC	2 cut(s)	173, 234
BseRI	GAGGAG	8 cut(s)	141, 824, 926, 929, 984, 987, 992, 1130
BseSI	GKGCMC	3 cut(s)	266, 284, 1083
BseXI	GCAGC	7 cut(s)	180, 575, 774, 787, 1480, 1531, 1848
BseYI	CCCAGC	2 cut(s)	1082, 1656
BsgI	GTGCAG	4 cut(s)	1120, 1404, 1443, 1797
Bsh1285I	CGRYCG	2 cut(s)	310, 870
BshFI	GGCC	5 cut(s)	641, 1225, 1248, 1739, 1852
BshNI	GGYRCC	1 cut(s)	844
BsiEI	CGRYCG	2 cut(s)	310, 870
BsiHKAI	GWGCWC	6 cut(s)	93, 113, 266, 284, 816, 1771
BsiHKCI	CYCGRG	3 cut(s)	56, 134, 285
BsiSI	CCGG	6 cut(s)	772, 838, 848, 923, 1222, 1735
BslI	CCNNNNNNNGG	3 cut(s)	616, 778, 1595
BsmAI	GTCTC	4 cut(s)	175, 795, 1550, 1787
BsmBI	CGTCTC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	1682
BsnI	GGCC	5 cut(s)	641, 1225, 1248, 1739, 1852
Bso31I	GGTCTC	3 cut(s)	795, 1550, 1787
BsoBI	CYCGRG	3 cut(s)	56, 134, 285
Bsp119I	TTCGAA	1 cut(s)	931
Bsp1286I	GDGCHC	9 cut(s)	93, 113, 266, 273, 284, 816, 1083, 1389, 1771
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
BspANI	GGCC	5 cut(s)	641, 1225, 1248, 1739, 1852
BspCNI	CTCAG	4 cut(s)	524, 733, 799, 1953
BspEI	TCCGGA	1 cut(s)	837
BspLI	GGNNCC	6 cut(s)	574, 783, 836, 846, 1119, 1967
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	2 cut(s)	267, 1769
BspPI	GGATC	4 cut(s)	374, 662, 829, 842
BspT104I	TTCGAA	1 cut(s)	931
BspT107I	GGYRCC	1 cut(s)	844
BspTNI	GGTCTC	3 cut(s)	795, 1550, 1787
BsrBI	CCGCTC	2 cut(s)	77, 258
BsrDI	GCAATG	2 cut(s)	630, 1802
BsrFI	RCCGGY	1 cut(s)	1221
BsrI	ACTGG	2 cut(s)	1508, 1873
BssAI	RCCGGY	1 cut(s)	1221
BssECI	CCNNGG	5 cut(s)	135, 429, 568, 1815, 1969
BssHII	GCGCGC	2 cut(s)	173, 234
BssMI	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
BssNAI	GTATAC	1 cut(s)	1958
BssT1I	CCWWGG	3 cut(s)	429, 568, 1969
Bst1107I	GTATAC	1 cut(s)	1958
Bst4CI	ACNGT	8 cut(s)	311, 533, 591, 938, 1140, 1467, 1598, 1816
Bst6I	CTCTTC	3 cut(s)	118, 242, 903
BstBAI	YACGTR	1 cut(s)	1192
BstBI	TTCGAA	1 cut(s)	931
BstDEI	CTNAG	7 cut(s)	450, 511, 741, 807, 1690, 1949, 1961
BstDSI	CCRYGG	1 cut(s)	1815
BstF5I	GGATG	5 cut(s)	45, 387, 846, 895, 1585
BstH2I	RGCGCY	3 cut(s)	56, 134, 194
BstKTI	GATC	8 cut(s)	366, 382, 657, 684, 837, 870, 1062, 1830
BstMAI	GTCTC	4 cut(s)	175, 795, 1550, 1787
BstMBI	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
BstMCI	CGRYCG	2 cut(s)	310, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	784, 796, 820, 1519, 1775, 1868
BstNSI	RCATGY	1 cut(s)	1717
BstSCI	CCNGG	1 cut(s)	1734
BstSFI	CTRYAG	3 cut(s)	532, 561, 587
BstSLI	GKGCMC	3 cut(s)	266, 284, 1083
BstSNI	TACGTA	1 cut(s)	1192
BstV1I	GCAGC	7 cut(s)	180, 575, 774, 787, 1480, 1531, 1848
BstV2I	GAAGAC	3 cut(s)	70, 150, 211
BstX2I	RGATCY	1 cut(s)	834
BstXI	CCANNNNNNTGG	2 cut(s)	478, 1431
BstYI	RGATCY	1 cut(s)	834
BstZ17I	GTATAC	1 cut(s)	1958
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	641, 1225, 1248, 1739, 1852
BtgI	CCRYGG	1 cut(s)	1815
BtrI	CACGTC	1 cut(s)	1592
BtsCI	GGATG	5 cut(s)	45, 387, 846, 895, 1585
BtsI	GCAGTG	1 cut(s)	1108
BtsIMutI	CAGTG	7 cut(s)	529, 1103, 1108, 1206, 1389, 1515, 1880
BveI	ACCTGC	2 cut(s)	267, 1769
CaiI	CAGNNNCTG	1 cut(s)	671
Cfr10I	RCCGGY	1 cut(s)	1221
Cfr13I	GGNCC	2 cut(s)	1737, 1965
CseI	GACGC	1 cut(s)	1053
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	9 cut(s)	478, 500, 1229, 1275, 1340, 1374, 1714, 1772, 1895
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	7 cut(s)	450, 511, 741, 807, 1690, 1949, 1961
DpnI	GATC	8 cut(s)	365, 381, 656, 683, 836, 869, 1061, 1829
DpnII	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
EaeI	YGGCCR	2 cut(s)	1246, 1850
Eam1104I	CTCTTC	3 cut(s)	118, 242, 903
EarI	CTCTTC	3 cut(s)	118, 242, 903
Ecl136II	GAGCTC	1 cut(s)	814
Eco105I	TACGTA	1 cut(s)	1192
Eco130I	CCWWGG	3 cut(s)	429, 568, 1969
Eco24I	GRGCYC	3 cut(s)	273, 816, 1389
Eco31I	GGTCTC	3 cut(s)	795, 1550, 1787
Eco47I	GGWCC	1 cut(s)	1965
Eco47III	AGCGCT	2 cut(s)	54, 192
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	1413
Eco81I	CCTNAGG	1 cut(s)	807
Eco88I	CYCGRG	3 cut(s)	56, 134, 285
EcoICRI	GAGCTC	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	1965
EcoRI	GAATTC	1 cut(s)	1503
EcoT14I	CCWWGG	3 cut(s)	429, 568, 1969
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	3 cut(s)	273, 816, 1389
ErhI	CCWWGG	3 cut(s)	429, 568, 1969
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	9 cut(s)	481, 503, 1232, 1278, 1343, 1377, 1717, 1775, 1898
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FatI	CATG	9 cut(s)	477, 499, 1228, 1274, 1339, 1373, 1713, 1771, 1894
FauI	CCCGC	8 cut(s)	70, 150, 170, 191, 211, 231, 251, 1903
FblI	GTMKAC	2 cut(s)	586, 1957
Fnu4HI	GCNGC	9 cut(s)	194, 564, 776, 788, 874, 1022, 1494, 1520, 1837
FokI	GGATG	5 cut(s)	52, 374, 853, 902, 1572
FriOI	GRGCYC	3 cut(s)	273, 816, 1389
Fsp4HI	GCNGC	9 cut(s)	194, 564, 776, 788, 874, 1022, 1494, 1520, 1837
FspBI	CTAG	4 cut(s)	329, 765, 1218, 1293
GluI	GCNGC	9 cut(s)	194, 564, 776, 788, 874, 1022, 1494, 1520, 1837
GsaI	CCCAGC	2 cut(s)	1086, 1660
GsuI	CTGGAG	1 cut(s)	1844
HaeII	RGCGCY	3 cut(s)	56, 134, 194
HaeIII	GGCC	5 cut(s)	641, 1225, 1248, 1739, 1852
HapII	CCGG	6 cut(s)	772, 838, 848, 923, 1222, 1735
HgaI	GACGC	1 cut(s)	1053
Hin1II	CATG	9 cut(s)	481, 503, 1232, 1278, 1343, 1377, 1717, 1775, 1898
HinfI	GANTC	8 cut(s)	317, 507, 668, 768, 1069, 1203, 1610, 1666
HpaII	CCGG	6 cut(s)	772, 838, 848, 923, 1222, 1735
HphI	GGTGA	9 cut(s)	172, 233, 253, 458, 493, 868, 1040, 1144, 1344
Hpy166II	GTNNAC	6 cut(s)	264, 282, 547, 587, 1696, 1958
Hpy188I	TCNGA	5 cut(s)	304, 316, 553, 673, 1471
Hpy188III	TCNNGA	9 cut(s)	58, 658, 701, 731, 838, 1007, 1200, 1745, 1823
Hpy8I	GTNNAC	6 cut(s)	264, 282, 547, 587, 1696, 1958
Hpy99I	CGWCG	2 cut(s)	308, 1069
HpyAV	CCTTC	2 cut(s)	97, 497
HpyCH4III	ACNGT	8 cut(s)	311, 533, 591, 938, 1140, 1467, 1598, 1816
HpyCH4IV	ACGT	3 cut(s)	474, 1191, 1591
HpyF10VI	GCNNNNNNNGC	6 cut(s)	784, 796, 820, 1519, 1775, 1868
HpyF3I	CTNAG	7 cut(s)	450, 511, 741, 807, 1690, 1949, 1961
HpySE526I	ACGT	3 cut(s)	474, 1191, 1591
Hsp92II	CATG	9 cut(s)	481, 503, 1232, 1278, 1343, 1377, 1717, 1775, 1898
Kpn2I	TCCGGA	1 cut(s)	837
KroI	GCCGGC	1 cut(s)	1221
KroNI	GCCGGC	1 cut(s)	1223
Kzo9I	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
LmnI	GCTCC	5 cut(s)	128, 811, 1054, 1117, 1412
Lsp1109I	GCAGC	7 cut(s)	180, 575, 774, 787, 1480, 1531, 1848
LweI	GCATC	6 cut(s)	400, 422, 1547, 1594, 1633, 1738
MaeI	CTAG	4 cut(s)	329, 765, 1218, 1293
MaeII	ACGT	3 cut(s)	474, 1191, 1591
MaeIII	GTNAC	7 cut(s)	481, 527, 701, 1132, 1187, 1204, 1592
MalI	GATC	8 cut(s)	365, 381, 656, 683, 836, 869, 1061, 1829
MbiI	CCGCTC	2 cut(s)	77, 258
MboI	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
MfeI	CAATTG	2 cut(s)	1262, 1932
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	9 cut(s)	93, 113, 266, 273, 284, 816, 1083, 1389, 1771
MlsI	TGGCCA	1 cut(s)	1248
MluCI	AATT	7 cut(s)	402, 724, 1262, 1472, 1503, 1866, 1932
MluNI	TGGCCA	1 cut(s)	1248
MlyI	GAGTC	1 cut(s)	1212
MmeI	TCCRAC	2 cut(s)	327, 1866
Mox20I	TGGCCA	1 cut(s)	1248
Mph1103I	ATGCAT	1 cut(s)	415
MroI	TCCGGA	1 cut(s)	837
MroNI	GCCGGC	1 cut(s)	1221
MscI	TGGCCA	1 cut(s)	1248
MseI	TTAA	6 cut(s)	336, 1380, 1619, 1649, 1865, 1902
MslI	CAYNNNNRTG	2 cut(s)	1443, 1718
Msp20I	TGGCCA	1 cut(s)	1248
MspA1I	CMGCKG	2 cut(s)	778, 787
MspI	CCGG	6 cut(s)	772, 838, 848, 923, 1222, 1735
MspR9I	CCNGG	1 cut(s)	1736
MteI	GCGCNGCGC	1 cut(s)	194
MunI	CAATTG	2 cut(s)	1262, 1932
Mva1269I	GAATGC	1 cut(s)	1682
MwoI	GCNNNNNNNGC	6 cut(s)	784, 796, 820, 1519, 1775, 1868
NaeI	GCCGGC	1 cut(s)	1223
NciI	CCSGG	1 cut(s)	1736
NdeII	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
NgoMIV	GCCGGC	1 cut(s)	1221
NlaIII	CATG	9 cut(s)	481, 503, 1232, 1278, 1343, 1377, 1717, 1775, 1898
NlaIV	GGNNCC	6 cut(s)	574, 783, 836, 846, 1119, 1967
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	6 cut(s)	481, 527, 701, 1132, 1204, 1592
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	1717
NspV	TTCGAA	1 cut(s)	931
PaqCI	CACCTGC	1 cut(s)	267
PauI	GCGCGC	2 cut(s)	173, 234
PciI	ACATGT	1 cut(s)	1713
PctI	GAATGC	1 cut(s)	1682
PdiI	GCCGGC	1 cut(s)	1223
PfeI	GAWTC	7 cut(s)	317, 507, 668, 768, 1069, 1610, 1666
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	9 cut(s)	195, 565, 777, 789, 875, 1023, 1495, 1521, 1838
Ple19I	CGATCG	1 cut(s)	870
PleI	GAGTC	1 cut(s)	1211
PpsI	GAGTC	1 cut(s)	1211
Ppu21I	YACGTR	1 cut(s)	1192
PpuMI	RGGWCCY	1 cut(s)	1965
PscI	ACATGT	1 cut(s)	1713
PshBI	ATTAAT	1 cut(s)	1902
Psp124BI	GAGCTC	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	1965
PspFI	CCCAGC	2 cut(s)	1082, 1656
PspN4I	GGNNCC	6 cut(s)	574, 783, 836, 846, 1119, 1967
PspPI	GGNCC	2 cut(s)	1737, 1965
PspPPI	RGGWCCY	1 cut(s)	1965
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	834
PteI	GCGCGC	2 cut(s)	173, 234
PvuI	CGATCG	1 cut(s)	870
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	2 cut(s)	1443, 1718
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	336, 1380, 1619, 1649, 1865, 1902
SatI	GCNGC	9 cut(s)	194, 564, 776, 788, 874, 1022, 1494, 1520, 1837
Sau3AI	GATC	8 cut(s)	363, 379, 654, 681, 834, 867, 1059, 1827
Sau96I	GGNCC	2 cut(s)	1737, 1965
SchI	GAGTC	1 cut(s)	1212
ScrFI	CCNGG	1 cut(s)	1736
SduI	GDGCHC	9 cut(s)	93, 113, 266, 273, 284, 816, 1083, 1389, 1771
SfaNI	GCATC	6 cut(s)	400, 422, 1547, 1594, 1633, 1738
SfcI	CTRYAG	3 cut(s)	532, 561, 587
SfuI	TTCGAA	1 cut(s)	931
SinI	GGWCC	1 cut(s)	1965
SmiMI	CAYNNNNRTG	2 cut(s)	1443, 1718
SmlI	CTYRAG	3 cut(s)	322, 693, 731
SmoI	CTYRAG	3 cut(s)	322, 693, 731
SnaBI	TACGTA	1 cut(s)	1192
Sse9I	AATT	7 cut(s)	402, 724, 1262, 1472, 1503, 1866, 1932
SspMI	CTAG	4 cut(s)	329, 765, 1218, 1293
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	1734
StyI	CCWWGG	3 cut(s)	429, 568, 1969
TaaI	ACNGT	8 cut(s)	311, 533, 591, 938, 1140, 1467, 1598, 1816
TaiI	ACGT	3 cut(s)	477, 1194, 1594
TaqI	TCGA	8 cut(s)	362, 416, 866, 931, 951, 1067, 1664, 1718
TasI	AATT	7 cut(s)	402, 724, 1262, 1472, 1503, 1866, 1932
TauI	GCSGC	2 cut(s)	876, 1024
TfiI	GAWTC	7 cut(s)	317, 507, 668, 768, 1069, 1610, 1666
Tru1I	TTAA	6 cut(s)	336, 1380, 1619, 1649, 1865, 1902
Tru9I	TTAA	6 cut(s)	336, 1380, 1619, 1649, 1865, 1902
TscAI	CASTG	7 cut(s)	536, 1103, 1108, 1213, 1396, 1515, 1880
TseFI	GTSAC	6 cut(s)	481, 527, 701, 1132, 1204, 1592
TseI	GCWGC	7 cut(s)	193, 563, 775, 787, 1493, 1519, 1836
Tsp45I	GTSAC	6 cut(s)	481, 527, 701, 1132, 1204, 1592
TspDTI	ATGAA	5 cut(s)	56, 477, 516, 1380, 1736
TspGWI	ACGGA	3 cut(s)	1187, 1713, 1917
TspRI	CASTG	7 cut(s)	536, 1103, 1108, 1213, 1396, 1515, 1880
Van91I	CCANNNNNTGG	1 cut(s)	616
VneI	GTGCAC	2 cut(s)	262, 280
VpaK11BI	GGWCC	1 cut(s)	1965
VspI	ATTAAT	1 cut(s)	1902
XapI	RAATTY	2 cut(s)	1472, 1503
XceI	RCATGY	1 cut(s)	1717
XmiI	GTMKAC	2 cut(s)	586, 1957
XspI	CTAG	4 cut(s)	329, 765, 1218, 1293
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.