Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

30113115 .. 30113612

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1206700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATTAAAGCCTCTTTTGGATTTCCAGTACATGGACATCGTACTGAGAAGCCAAGCTCAGGTCATAATGTCCTTTTTGTTCGACGAGAAGATTACCTAGCCCATCCACGCCACCATGGTAAGGTTGAGTCAAGGCTAAGCAATGAACAAGAAGTGTTTGATGCCTTGAAGAACTGCGTATCTAATCATAAGGAATGCAAAATAAACCTTGTGAATGGATTGTTTGCACACATGTCGATGAAAGAGCAAGTCCGGGCCATTCAAGATGCTTCTGTCATTATCGGTGCTCATGGTGCAGGTCTCACACACGTAGTATCTGCAATGCCAAAAACCGCGATTCTCGAGATTATTAGCAGTGAGTATAAACGCCCACATTTTGAATTAATTGCTCAGTGGAAGGGGTTGGAATATCATGCCATTAATCTCGAAGGGTCATTTGCCAGTACACCAGTTGTTATTGACAGGCTTAACGGCATAATGAAAAGCCTCGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

166

Amino Acids

18.36

Weight (kDa)

8.81

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	31 - 114	9.5e-12	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccII	CGCG	1 cut(s)	335
AciI	CCGC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	30, 43, 445
AfiI	CCNNNNNNNGG	3 cut(s)	32, 59, 121
AflIII	ACRYGT	2 cut(s)	231, 307
AgsI	TTSAA	3 cut(s)	169, 263, 380
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	305
Ama87I	CYCGRG	2 cut(s)	341, 488
AoxI	GGCC	1 cut(s)	255
AseI	ATTAAT	2 cut(s)	383, 420
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	254
AvaI	CYCGRG	2 cut(s)	341, 488
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	287
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	254
BmeT110I	CYCGRG	2 cut(s)	341, 488
BmgT120I	GGNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	151, 256
Bpu10I	CCTNAGC	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	115, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 59, 121
Bse1I	ACTGG	3 cut(s)	26, 441, 449
Bse3DI	GCAATG	2 cut(s)	148, 327
BseDI	CCNNGG	2 cut(s)	115, 487
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	32, 59, 121
BseMI	GCAATG	2 cut(s)	148, 327
BseMII	CTCAG	3 cut(s)	36, 72, 404
BseNI	ACTGG	3 cut(s)	26, 441, 449
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	2 cut(s)	341, 488
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	32, 59, 121
BsmAI	GTCTC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	341, 488
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1720I	GCTNAGC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	3 cut(s)	37, 71, 403
BspFNI	CGCG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	148, 327
BsrI	ACTGG	3 cut(s)	26, 441, 449
BssECI	CCNNGG	2 cut(s)	115, 487
BssT1I	CCWWGG	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	310
BstDEI	CTNAG	4 cut(s)	45, 58, 137, 390
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	335
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 492
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	361, 398
BveI	ACCTGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	3 cut(s)	29, 42, 444
CviAII	CATG	5 cut(s)	32, 116, 232, 290, 413
CviJI	RGCY	8 cut(s)	11, 52, 57, 101, 136, 257, 466, 486
CviKI_1	RGCY	8 cut(s)	11, 52, 57, 101, 136, 257, 466, 486
CviQI	GTAC	3 cut(s)	29, 42, 444
DdeI	CTNAG	4 cut(s)	45, 58, 137, 390
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	305
Eco88I	CYCGRG	2 cut(s)	341, 488
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	5 cut(s)	35, 119, 235, 293, 416
FaiI	YATR	9 cut(s)	33, 66, 117, 189, 233, 291, 363, 414, 476
FatI	CATG	5 cut(s)	31, 115, 231, 289, 412
FokI	GGATG	1 cut(s)	90
FspBI	CTAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	5 cut(s)	35, 119, 235, 293, 416
HinfI	GANTC	2 cut(s)	128, 337
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188III	TCNNGA	4 cut(s)	263, 341, 343, 425
Hpy8I	GTNNAC	1 cut(s)	446
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	391, 422
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	198, 227, 296, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 492
HpyF3I	CTNAG	4 cut(s)	45, 58, 137, 390
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	35, 119, 235, 293, 416
LpnPI	CCDG	7 cut(s)	39, 45, 266, 282, 448, 454, 462
LweI	GCATC	2 cut(s)	151, 256
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	309
MboII	GAAGA	2 cut(s)	101, 181
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	380, 384
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	2 cut(s)	22, 497
MseI	TTAA	4 cut(s)	6, 383, 420, 468
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	293, 492
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	115
NlaIII	CATG	5 cut(s)	35, 119, 235, 293, 416
NspI	RCATGY	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	341
PciI	ACATGT	1 cut(s)	231
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	231
PshBI	ATTAAT	2 cut(s)	383, 420
PspPI	GGNCC	1 cut(s)	255
RsaI	GTAC	3 cut(s)	30, 43, 445
RsaNI	GTAC	3 cut(s)	29, 42, 444
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	6, 383, 420, 468
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	7 cut(s)	59, 64, 99, 126, 210, 301, 312
SfaNI	GCATC	2 cut(s)	151, 256
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	380, 384
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	4 cut(s)	82, 236, 342, 426
TasI	AATT	2 cut(s)	380, 384
TatI	WGTACW	2 cut(s)	28, 443
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	6, 383, 420, 468
Tru9I	TTAA	4 cut(s)	6, 383, 420, 468
TscAI	CASTG	2 cut(s)	361, 398
TspDTI	ATGAA	3 cut(s)	159, 254, 494
TspRI	CASTG	2 cut(s)	361, 398
Van91I	CCANNNNNTGG	1 cut(s)	32
VspI	ATTAAT	2 cut(s)	383, 420
XceI	RCATGY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	341
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.