Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

85414296 .. 85417233

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG553300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTCGGAATGCTGGTCCAATCTCCTGTTTCTGATCTCTCTTGCATTTGTCATTTTCTGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCCTTAGATATGCGAAAAACTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAGACTGCATTGTTTAAGGGGCTCACTGAAGATATAAAGTGTGAGGGAGCTTCTGCACCAGAGGTTTGGCAGCACCCTGATGACCAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCATAGGCAGCATATTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGGCGTGAAGATTATCTATCGCATCCACGTCACGGTGGTAGAGTTGAATCAAGGTTAAGCAATGAACAAGAAGTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAATGCAAATTAAACCTACTGAATGGATTGTTTGCACACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCTCGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGACTATTAGCAGCCAATATAGACGGCCACATTTTGCTTTAATTACCCAGTGGAAAGGGTTGGAATATCATGCCATTAATCTTGGGGGTTTGTATACGTTTTCGTCAGTTGTTATTGACAACCTTAGCCGTATACTGAGGACCCTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

260

Amino Acids

29.13

Weight (kDa)

8.21

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	112 - 209	6.9e-11	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	572
AccI	GTMKAC	2 cut(s)	722, 760
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	2 cut(s)	413, 548
AjiI	CACGTC	1 cut(s)	395
AluBI	AGCT	3 cut(s)	218, 296, 459
AluI	AGCT	3 cut(s)	218, 296, 459
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	4 cut(s)	164, 353, 590, 623
AoxI	GGCC	2 cut(s)	540, 653
ApeKI	GCWGC	4 cut(s)	238, 296, 322, 639
ApoI	RAATTY	1 cut(s)	306
AseI	ATTAAT	1 cut(s)	705
AspS9I	GGNCC	4 cut(s)	16, 125, 540, 768
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	3 cut(s)	16, 125, 768
AxyI	CCTNAGG	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	250, 283, 334, 651
BceAI	ACGGC	2 cut(s)	668, 741
BcgI	CGANNNNNNTGC	4 cut(s)	501, 535, 570, 604
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	4 cut(s)	164, 353, 590, 623
BfaI	CTAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	572
BisI	GCNGC	4 cut(s)	239, 297, 323, 640
BlsI	GCNGC	4 cut(s)	240, 298, 324, 641
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	3 cut(s)	16, 125, 768
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	4 cut(s)	16, 125, 540, 768
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	539
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	3 cut(s)	397, 436, 541
BmuI	ACTGGG	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	353, 590
BsaJI	CCNNGG	2 cut(s)	618, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	3 cut(s)	128, 311, 676
Bse21I	CCTNAGG	1 cut(s)	343
Bse3DI	GCAATG	2 cut(s)	433, 605
BseDI	CCNNGG	2 cut(s)	618, 772
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	2 cut(s)	433, 605
BseMII	CTCAG	3 cut(s)	264, 357, 755
BseNI	ACTGG	3 cut(s)	128, 311, 676
BseXI	GCAGC	4 cut(s)	250, 283, 334, 651
BseYI	CCCAGC	1 cut(s)	459
BsgI	GTGCAG	3 cut(s)	207, 246, 600
BshFI	GGCC	2 cut(s)	542, 655
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	4 cut(s)	164, 353, 590, 623
BsmI	GAATGC	2 cut(s)	15, 485
BsnI	GGCC	2 cut(s)	542, 655
Bso31I	GGTCTC	2 cut(s)	353, 590
Bsp1286I	GDGCHC	2 cut(s)	192, 574
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	542, 655
BspCNI	CTCAG	3 cut(s)	265, 356, 756
BspLI	GGNNCC	1 cut(s)	770
BspMI	ACCTGC	1 cut(s)	572
BspTNI	GGTCTC	2 cut(s)	353, 590
BsrDI	GCAATG	2 cut(s)	433, 605
BsrI	ACTGG	3 cut(s)	128, 311, 676
BssECI	CCNNGG	2 cut(s)	618, 772
BssMI	GATC	1 cut(s)	34
BssNAI	GTATAC	2 cut(s)	723, 761
BssT1I	CCWWGG	1 cut(s)	772
Bst1107I	GTATAC	2 cut(s)	723, 761
Bst4CI	ACNGT	3 cut(s)	270, 401, 619
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	101, 273, 343, 752, 764
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	4 cut(s)	164, 353, 590, 623
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 578
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	250, 283, 334, 651
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstZ17I	GTATAC	2 cut(s)	723, 761
Bsu36I	CCTNAGG	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	542, 655
BtgI	CCRYGG	1 cut(s)	618
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	192, 318, 683
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	4 cut(s)	16, 125, 540, 768
CviAII	CATG	5 cut(s)	78, 143, 517, 575, 698
DdeI	CTNAG	5 cut(s)	101, 273, 343, 752, 764
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	2 cut(s)	353, 590
Eco47I	GGWCC	3 cut(s)	16, 125, 768
Eco57I	CTGAAG	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	5 cut(s)	81, 146, 520, 578, 701
FatI	CATG	5 cut(s)	77, 142, 516, 574, 697
FblI	GTMKAC	2 cut(s)	722, 760
Fnu4HI	GCNGC	4 cut(s)	239, 297, 323, 640
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	239, 297, 323, 640
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	4 cut(s)	239, 297, 323, 640
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	542, 655
HapII	CCGG	1 cut(s)	538
Hin1II	CATG	5 cut(s)	81, 146, 520, 578, 701
HinfI	GANTC	2 cut(s)	413, 469
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	723, 761
Hpy188I	TCNGA	4 cut(s)	8, 34, 60, 274
Hpy188III	TCNNGA	2 cut(s)	548, 626
Hpy8I	GTNNAC	2 cut(s)	723, 761
HpyCH4III	ACNGT	3 cut(s)	270, 401, 619
HpyCH4IV	ACGT	2 cut(s)	394, 725
HpyCH4V	TGCA	9 cut(s)	45, 176, 224, 263, 316, 483, 512, 581, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 578
HpyF3I	CTNAG	5 cut(s)	101, 273, 343, 752, 764
HpySE526I	ACGT	2 cut(s)	394, 725
Hsp92II	CATG	5 cut(s)	81, 146, 520, 578, 701
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	4 cut(s)	250, 283, 334, 651
LweI	GCATC	3 cut(s)	397, 436, 541
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	2 cut(s)	394, 725
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	83, 209, 386
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	192, 574
MluCI	AATT	4 cut(s)	65, 306, 485, 669
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	5 cut(s)	168, 205, 223, 352, 759
MseI	TTAA	6 cut(s)	183, 422, 452, 488, 668, 705
MslI	CAYNNNNRTG	2 cut(s)	246, 521
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	2 cut(s)	15, 485
MwoI	GCNNNNNNNGC	2 cut(s)	322, 578
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	5 cut(s)	81, 146, 520, 578, 701
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	520
PciI	ACATGT	1 cut(s)	516
PctI	GAATGC	2 cut(s)	15, 485
PfeI	GAWTC	2 cut(s)	413, 469
PkrI	GCNGC	4 cut(s)	240, 298, 324, 641
PpuMI	RGGWCCY	1 cut(s)	768
PscI	ACATGT	1 cut(s)	516
PshBI	ATTAAT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	4 cut(s)	16, 125, 540, 768
PspPPI	RGGWCCY	1 cut(s)	768
RseI	CAYNNNNRTG	2 cut(s)	246, 521
SaqAI	TTAA	6 cut(s)	183, 422, 452, 488, 668, 705
SatI	GCNGC	4 cut(s)	239, 297, 323, 640
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	4 cut(s)	16, 125, 540, 768
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	192, 574
SfaNI	GCATC	3 cut(s)	397, 436, 541
SinI	GGWCC	3 cut(s)	16, 125, 768
SmiMI	CAYNNNNRTG	2 cut(s)	246, 521
Sse9I	AATT	4 cut(s)	65, 306, 485, 669
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	270, 401, 619
TaiI	ACGT	2 cut(s)	397, 728
TaqI	TCGA	2 cut(s)	467, 521
TasI	AATT	4 cut(s)	65, 306, 485, 669
TfiI	GAWTC	2 cut(s)	413, 469
Tru1I	TTAA	6 cut(s)	183, 422, 452, 488, 668, 705
Tru9I	TTAA	6 cut(s)	183, 422, 452, 488, 668, 705
TscAI	CASTG	3 cut(s)	199, 318, 683
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	4 cut(s)	238, 296, 322, 639
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	444, 539
TspRI	CASTG	3 cut(s)	199, 318, 683
VpaK11BI	GGWCC	3 cut(s)	16, 125, 768
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	520
XmiI	GTMKAC	2 cut(s)	722, 760
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.