Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

86471745 .. 86474191

Gene Structure 2447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG543400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGAAAAACTTTAGTGGTCCAGTTTGTTTTTCGTCATGCTATTATTTCAGTTCTTGGATATGAGACTGCATGGTTTAAGGGGCTCACTGAAGATATAAAGTGTGAGGGAGCTTCTGCACCAGAGCTTTGGCAGCACCCTGATGACCAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCATAGGCAGCATATTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGGCGTGAAGATTATCTACCGCATCCACGTCACGGTGGTAGAGTTGAATCAAGGTTAAGCAATGAACAAGAACTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAATGCAAATTAAACCTACTGAATGGATTGTTTGCACACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCACGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGACTATTAGCAGCCAATATAGACGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

184

Amino Acids

20.85

Weight (kDa)

8.95

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	77 - 174	1.4e-11	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AciI	CCGC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	308, 443
AjiI	CACGTC	1 cut(s)	290
AluBI	AGCT	4 cut(s)	113, 127, 191, 354
AluI	AGCT	4 cut(s)	113, 127, 191, 354
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	4 cut(s)	59, 248, 485, 518
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	133, 191, 217, 534
ApoI	RAATTY	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	19, 435
AsuC2I	CCSGG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	145, 178, 229, 546
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	4 cut(s)	59, 248, 485, 518
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	4 cut(s)	134, 192, 218, 535
BlsI	GCNGC	4 cut(s)	135, 193, 219, 536
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	19, 435
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	3 cut(s)	292, 331, 436
BpmI	CTGGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	434
BsaI	GGTCTC	2 cut(s)	248, 485
BsaJI	CCNNGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	22, 206
Bse21I	CCTNAGG	1 cut(s)	238
Bse3DI	GCAATG	2 cut(s)	328, 500
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	2 cut(s)	328, 500
BseMII	CTCAG	2 cut(s)	159, 252
BseNI	ACTGG	2 cut(s)	22, 206
BseXI	GCAGC	4 cut(s)	145, 178, 229, 546
BseYI	CCCAGC	1 cut(s)	354
BsgI	GTGCAG	3 cut(s)	102, 141, 495
BshFI	GGCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	4 cut(s)	59, 248, 485, 518
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	437
Bso31I	GGTCTC	2 cut(s)	248, 485
Bsp1286I	GDGCHC	2 cut(s)	87, 469
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	2 cut(s)	160, 251
BspMI	ACCTGC	1 cut(s)	467
BspTNI	GGTCTC	2 cut(s)	248, 485
BsrDI	GCAATG	2 cut(s)	328, 500
BsrI	ACTGG	2 cut(s)	22, 206
BssECI	CCNNGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	165, 296, 514
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	168, 238
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	283
BstMAI	GTCTC	4 cut(s)	59, 248, 485, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 217, 473
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	145, 178, 229, 546
BstXI	CCANNNNNNTGG	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	437
BtgI	CCRYGG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	87, 213
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	19, 435
CviAII	CATG	4 cut(s)	38, 72, 412, 470
CviJI	RGCY	9 cut(s)	85, 113, 127, 191, 236, 354, 437, 537, 550
CviKI_1	RGCY	9 cut(s)	85, 113, 127, 191, 236, 354, 437, 537, 550
DdeI	CTNAG	2 cut(s)	168, 238
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	2 cut(s)	248, 485
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	4 cut(s)	41, 75, 415, 473
FatI	CATG	4 cut(s)	37, 71, 411, 469
Fnu4HI	GCNGC	4 cut(s)	134, 192, 218, 535
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	134, 192, 218, 535
GluI	GCNGC	4 cut(s)	134, 192, 218, 535
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	4 cut(s)	41, 75, 415, 473
HinfI	GANTC	2 cut(s)	308, 364
HpaII	CCGG	1 cut(s)	433
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	443, 521
HpyCH4III	ACNGT	3 cut(s)	165, 296, 514
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	8 cut(s)	71, 119, 158, 211, 378, 407, 476, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 217, 473
HpyF3I	CTNAG	2 cut(s)	168, 238
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	41, 75, 415, 473
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	4 cut(s)	145, 178, 229, 546
LweI	GCATC	3 cut(s)	292, 331, 436
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	104, 281
MhlI	GDGCHC	2 cut(s)	87, 469
MluCI	AATT	2 cut(s)	201, 380
MnlI	CCTC	2 cut(s)	100, 247
MseI	TTAA	5 cut(s)	78, 317, 347, 383, 553
MslI	CAYNNNNRTG	2 cut(s)	141, 416
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	133, 217, 473
NciI	CCSGG	1 cut(s)	434
NlaIII	CATG	4 cut(s)	41, 75, 415, 473
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	415
PciI	ACATGT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	308, 364
PkrI	GCNGC	4 cut(s)	135, 193, 219, 536
PscI	ACATGT	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	19, 435
RseI	CAYNNNNRTG	2 cut(s)	141, 416
SaqAI	TTAA	5 cut(s)	78, 317, 347, 383, 553
SatI	GCNGC	4 cut(s)	134, 192, 218, 535
Sau96I	GGNCC	2 cut(s)	19, 435
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	87, 469
SetI	ASST	9 cut(s)	115, 129, 193, 244, 292, 317, 356, 390, 481
SfaNI	GCATC	3 cut(s)	292, 331, 436
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	141, 416
Sse9I	AATT	2 cut(s)	201, 380
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	165, 296, 514
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	362, 416
TasI	AATT	2 cut(s)	201, 380
TfiI	GAWTC	2 cut(s)	308, 364
Tru1I	TTAA	5 cut(s)	78, 317, 347, 383, 553
Tru9I	TTAA	5 cut(s)	78, 317, 347, 383, 553
TscAI	CASTG	2 cut(s)	94, 213
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	4 cut(s)	133, 191, 217, 534
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	339, 434
TspRI	CASTG	2 cut(s)	94, 213
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.