Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

85850987 .. 85853446

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTGCCGGAGAGGGTGAAGATGCCGATTGGCGGCGAGGTTTTGGAGGATATGATTGGGAGAGGGGAGGAGGAAGAGGAGGAGGAGGAGTTGCCTGAGTTTCGAAACGGTGCGTTCGCAACGACACAATTGGAAGAAACATGGAAAGCATTGTTCTCTAGCCTTAGATATGCGAAAAGCTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAGACTGCATGGTTTAAGGGGCTCACTGAAGATATAAAGTGTGAGGGAGCTTCTGCACCAGAGCTTTGGCAGCACCCTGATGACCAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGCTGCTTTTGGAATTCCAGTGCATAGGCAGCATATTGAGAAGCAAGCCTCAGGTCTCCATATCCTTTTTGTTCGGCGTGAAGATTATCTACTGCATCCACGTCACGGTAGTAGAGTTGAATCAAGGTTAAGCAATGAACAAGAACTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAGTGCAAATTAAACCTACTGAATGGATTGTTTGCACACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCACGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGACTATTAGCAGCCAATATAGACGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

5.9

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	133 - 230	6.9e-12	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	635
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	32, 461
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	2 cut(s)	476, 611
AjiI	CACGTC	1 cut(s)	458
AluBI	AGCT	5 cut(s)	180, 281, 295, 359, 522
AluI	AGCT	5 cut(s)	180, 281, 295, 359, 522
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	4 cut(s)	227, 416, 653, 686
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	4 cut(s)	301, 359, 385, 702
ApoI	RAATTY	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	188, 603
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	28, 210
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	255
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	4 cut(s)	313, 346, 397, 714
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	4 cut(s)	227, 416, 653, 686
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	635
BisI	GCNGC	5 cut(s)	34, 302, 360, 386, 703
BlsI	GCNGC	5 cut(s)	35, 303, 361, 387, 704
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	188, 603
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	4 cut(s)	12, 460, 499, 604
BpmI	CTGGAG	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	602
BsaI	GGTCTC	2 cut(s)	416, 653
BsaJI	CCNNGG	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 461
Bse1I	ACTGG	2 cut(s)	191, 374
Bse21I	CCTNAGG	1 cut(s)	406
Bse3DI	GCAATG	2 cut(s)	496, 668
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	32, 461
BseMI	GCAATG	2 cut(s)	496, 668
BseMII	CTCAG	3 cut(s)	87, 327, 420
BseNI	ACTGG	2 cut(s)	191, 374
BseRI	GAGGAG	5 cut(s)	83, 92, 95, 98, 101
BseXI	GCAGC	4 cut(s)	313, 346, 397, 714
BseYI	CCCAGC	1 cut(s)	522
BsgI	GTGCAG	3 cut(s)	270, 309, 663
BshFI	GGCC	1 cut(s)	605
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	8, 601
BslI	CCNNNNNNNGG	2 cut(s)	32, 461
BsmAI	GTCTC	4 cut(s)	227, 416, 653, 686
BsnI	GGCC	1 cut(s)	605
Bso31I	GGTCTC	2 cut(s)	416, 653
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	255, 637
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	3 cut(s)	88, 328, 419
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	416, 653
BsrDI	GCAATG	2 cut(s)	496, 668
BsrI	ACTGG	2 cut(s)	191, 374
BssECI	CCNNGG	1 cut(s)	681
Bst4CI	ACNGT	4 cut(s)	110, 333, 464, 682
Bst6I	CTCTTC	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	96, 164, 336, 406
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	451
BstMAI	GTCTC	4 cut(s)	227, 416, 653, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 385, 641
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	313, 346, 397, 714
BstXI	CCANNNNNNTGG	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	605
BtgI	CCRYGG	1 cut(s)	681
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	255, 381
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	188, 603
CviAII	CATG	5 cut(s)	141, 206, 240, 580, 638
DdeI	CTNAG	4 cut(s)	96, 164, 336, 406
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	416, 653
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	5 cut(s)	144, 209, 243, 583, 641
FatI	CATG	5 cut(s)	140, 205, 239, 579, 637
Fnu4HI	GCNGC	5 cut(s)	34, 302, 360, 386, 703
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	34, 302, 360, 386, 703
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	5 cut(s)	34, 302, 360, 386, 703
GsaI	CCCAGC	1 cut(s)	526
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	2 cut(s)	8, 601
Hin1II	CATG	5 cut(s)	144, 209, 243, 583, 641
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	2 cut(s)	476, 532
HpaII	CCGG	2 cut(s)	8, 601
HphI	GGTGA	2 cut(s)	28, 210
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	611, 689
HpyCH4III	ACNGT	4 cut(s)	110, 333, 464, 682
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	9 cut(s)	239, 287, 326, 379, 451, 546, 575, 644, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 385, 641
HpyF3I	CTNAG	4 cut(s)	96, 164, 336, 406
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	5 cut(s)	144, 209, 243, 583, 641
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	4 cut(s)	313, 346, 397, 714
LweI	GCATC	4 cut(s)	12, 460, 499, 604
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	458
MboII	GAAGA	5 cut(s)	31, 86, 146, 272, 449
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	2 cut(s)	255, 637
MluCI	AATT	3 cut(s)	128, 369, 548
MseI	TTAA	5 cut(s)	246, 485, 515, 551, 721
MslI	CAYNNNNRTG	2 cut(s)	309, 584
MspI	CCGG	2 cut(s)	8, 601
MspR9I	CCNGG	1 cut(s)	602
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	301, 385, 641
NciI	CCSGG	1 cut(s)	602
NlaIII	CATG	5 cut(s)	144, 209, 243, 583, 641
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	103
PciI	ACATGT	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	476, 532
PkrI	GCNGC	5 cut(s)	35, 303, 361, 387, 704
PscI	ACATGT	1 cut(s)	579
PspFI	CCCAGC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	188, 603
RseI	CAYNNNNRTG	2 cut(s)	309, 584
SaqAI	TTAA	5 cut(s)	246, 485, 515, 551, 721
SatI	GCNGC	5 cut(s)	34, 302, 360, 386, 703
Sau96I	GGNCC	2 cut(s)	188, 603
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	255, 637
SfaNI	GCATC	4 cut(s)	12, 460, 499, 604
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	309, 584
Sse9I	AATT	3 cut(s)	128, 369, 548
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	4 cut(s)	110, 333, 464, 682
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	103, 530, 584
TasI	AATT	3 cut(s)	128, 369, 548
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	476, 532
Tru1I	TTAA	5 cut(s)	246, 485, 515, 551, 721
Tru9I	TTAA	5 cut(s)	246, 485, 515, 551, 721
TscAI	CASTG	2 cut(s)	262, 381
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	4 cut(s)	301, 359, 385, 702
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	507, 602
TspRI	CASTG	2 cut(s)	262, 381
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	369
XceI	RCATGY	1 cut(s)	583
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.