Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Forward (+)

36604544 .. 36606628

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG287400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAACAAAAACTCGTGGCTCCTGAAGATCGTGGTGTTCCTCTTCGCCCTAAACTCGCTCTCTCTCTATGAGGGAGCTGATCGGGTCGTGCCCAGCAAAGAGTTTCAGTGCAGTGTGTGGATTGAGGAGCCAACGCTTCTGGTGAAACGGTTTGAGTATGCAAATGTTTTCCACACATTCACGGATTGGTATAGCGGTTATGTAGCTTCCAGAGTCACTGGCTTACCTAGCCGGCCTCATGTTGTCTTTGTAGATGGCCATTGTAGGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCATTAGATATGCGAAAAACTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATGTCACCTCTTGGATATGAAACTGCATGGTTTAAGGGGCTCACTGAAGATATAGCGTGTGAGGGAGCTTCTGCACCAGAGCTGTGGCAACACCCTGATGACAAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGATTAGAGGTGCTTTTGGAATTCCAGTGCATAGGCAGCGTATTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGCCATGAAGATTATCTACCGCATCCACGTCACGGTGGTAAAGTTGAATCAAGGTTAAGCAACGAACAAGAAGTCTTTGATGCCTTAAAGTGCTGGGTGTCGAATCACAAGGAATGCAAAATAAACTTAGTGAACAGATTGTTTGCACACATGTCGATGAAAGAACAAGTCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCAGGTCTCATGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGAGATCATTAGCAGCCAATATAGACGGCCACATTTTGCTTTAATTGCCCAGTGGAAAGGGTTGGAATATCATGCCATTAGTCTTGCGGGTTTGTATGCCTCTCCGTCAGTTGTTATTGACAACCTTAGCCGTATACTGAGGACCCTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

329

Amino Acids

37.31

Weight (kDa)

8.76

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	199 - 278	2e-10	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	967
AciI	CCGC	3 cut(s)	195, 593, 920
AcoI	YGGCCR	2 cut(s)	256, 860
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	44, 423
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	2 cut(s)	620, 755
AjiI	CACGTC	1 cut(s)	602
AluBI	AGCT	4 cut(s)	77, 206, 425, 439
AluI	AGCT	4 cut(s)	77, 206, 425, 439
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	560, 797
AoxI	GGCC	4 cut(s)	233, 256, 747, 860
ApeKI	GCWGC	2 cut(s)	529, 846
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
AspS9I	GGNCC	3 cut(s)	332, 747, 975
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	154, 354
AvaII	GGWCC	2 cut(s)	332, 975
AxyI	CCTNAGG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	573, 605
BauI	CACGAG	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	2 cut(s)	541, 858
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	875, 948
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	2 cut(s)	560, 797
BfaI	CTAG	2 cut(s)	228, 303
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	2 cut(s)	530, 847
BlsI	GCNGC	2 cut(s)	531, 848
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	332, 975
BmgBI	CACGTC	1 cut(s)	602
BmgT120I	GGNCC	3 cut(s)	332, 747, 975
BmiI	GGNNCC	3 cut(s)	20, 129, 977
BmrFI	CCNGG	1 cut(s)	746
BmrI	ACTGGG	1 cut(s)	877
BmsI	GCATC	3 cut(s)	604, 643, 748
BmuI	ACTGGG	1 cut(s)	877
BpmI	CTGGAG	1 cut(s)	854
Bpu10I	CCTNAGC	1 cut(s)	959
BpuMI	CCSGG	1 cut(s)	746
BsaI	GGTCTC	2 cut(s)	560, 797
BsaJI	CCNNGG	2 cut(s)	825, 979
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	4 cut(s)	223, 335, 518, 883
Bse21I	CCTNAGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	812
BseDI	CCNNGG	2 cut(s)	825, 979
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	3 cut(s)	471, 564, 962
BseNI	ACTGG	4 cut(s)	223, 335, 518, 883
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	541, 858
BseYI	CCCAGC	2 cut(s)	92, 666
BsgI	GTGCAG	4 cut(s)	130, 414, 453, 807
BshFI	GGCC	4 cut(s)	235, 258, 749, 862
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	232, 745
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	560, 797
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	4 cut(s)	235, 258, 749, 862
Bso31I	GGTCTC	2 cut(s)	560, 797
Bsp1286I	GDGCHC	3 cut(s)	93, 399, 781
Bsp143I	GATC	3 cut(s)	27, 79, 837
BspACI	CCGC	3 cut(s)	195, 593, 920
BspANI	GGCC	4 cut(s)	235, 258, 749, 862
BspCNI	CTCAG	3 cut(s)	472, 563, 963
BspLI	GGNNCC	3 cut(s)	20, 129, 977
BspMI	ACCTGC	1 cut(s)	779
BspTNI	GGTCTC	2 cut(s)	560, 797
BsrDI	GCAATG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	4 cut(s)	223, 335, 518, 883
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	825, 979
BssMI	GATC	3 cut(s)	27, 79, 837
BssNAI	GTATAC	1 cut(s)	968
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	979
Bst1107I	GTATAC	1 cut(s)	968
Bst2BI	CACGAG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	150, 477, 608, 826
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	233, 546
BstDEI	CTNAG	5 cut(s)	480, 550, 700, 959, 971
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	3 cut(s)	30, 82, 840
BstMAI	GTCTC	2 cut(s)	560, 797
BstMBI	GATC	3 cut(s)	27, 79, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 529, 785, 878
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	541, 858
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstZ17I	GTATAC	1 cut(s)	968
Bsu36I	CCTNAGG	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	235, 258, 749, 862
BtgI	CCRYGG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	6 cut(s)	113, 118, 216, 399, 525, 890
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	2 cut(s)	233, 546
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	332, 747, 975
CviAII	CATG	9 cut(s)	239, 285, 350, 384, 578, 724, 782, 796, 905
DdeI	CTNAG	5 cut(s)	480, 550, 700, 959, 971
DpnI	GATC	3 cut(s)	29, 81, 839
DpnII	GATC	3 cut(s)	27, 79, 837
EaeI	YGGCCR	2 cut(s)	256, 860
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	2 cut(s)	560, 797
Eco47I	GGWCC	2 cut(s)	332, 975
Eco57I	CTGAAG	2 cut(s)	44, 423
Eco81I	CCTNAGG	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRI	GAATTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	979
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	979
FaeI	CATG	9 cut(s)	242, 288, 353, 387, 581, 727, 785, 799, 908
FatI	CATG	9 cut(s)	238, 284, 349, 383, 577, 723, 781, 795, 904
FauI	CCCGC	1 cut(s)	913
FblI	GTMKAC	1 cut(s)	967
Fnu4HI	GCNGC	2 cut(s)	530, 847
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	530, 847
FspBI	CTAG	2 cut(s)	228, 303
GluI	GCNGC	2 cut(s)	530, 847
GsaI	CCCAGC	2 cut(s)	96, 670
GsuI	CTGGAG	1 cut(s)	854
HaeIII	GGCC	4 cut(s)	235, 258, 749, 862
HapII	CCGG	2 cut(s)	232, 745
Hin1II	CATG	9 cut(s)	242, 288, 353, 387, 581, 727, 785, 799, 908
HinfI	GANTC	3 cut(s)	213, 620, 676
HpaII	CCGG	2 cut(s)	232, 745
HphI	GGTGA	2 cut(s)	154, 354
Hpy166II	GTNNAC	2 cut(s)	706, 968
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	4 cut(s)	22, 210, 755, 833
Hpy8I	GTNNAC	2 cut(s)	706, 968
HpyCH4III	ACNGT	4 cut(s)	150, 477, 608, 826
HpyCH4IV	ACGT	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 529, 785, 878
HpyF3I	CTNAG	5 cut(s)	480, 550, 700, 959, 971
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	9 cut(s)	242, 288, 353, 387, 581, 727, 785, 799, 908
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
Kzo9I	GATC	3 cut(s)	27, 79, 837
LmnI	GCTCC	4 cut(s)	24, 74, 127, 422
Lsp1109I	GCAGC	2 cut(s)	541, 858
LweI	GCATC	3 cut(s)	604, 643, 748
MaeI	CTAG	2 cut(s)	228, 303
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	214, 360, 602
MalI	GATC	3 cut(s)	29, 81, 839
MboI	GATC	3 cut(s)	27, 79, 837
MboII	GAAGA	5 cut(s)	34, 37, 290, 416, 593
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	3 cut(s)	93, 399, 781
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	272, 513, 876
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	876
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	1 cut(s)	801
MroNI	GCCGGC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	4 cut(s)	390, 629, 659, 875
MslI	CAYNNNNRTG	2 cut(s)	453, 728
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	232, 745
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	4 cut(s)	228, 529, 785, 878
NaeI	GCCGGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	3 cut(s)	27, 79, 837
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	9 cut(s)	242, 288, 353, 387, 581, 727, 785, 799, 908
NlaIV	GGNNCC	3 cut(s)	20, 129, 977
NmuCI	GTSAC	3 cut(s)	214, 360, 602
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PctI	GAATGC	1 cut(s)	692
PdiI	GCCGGC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	620, 676
PkrI	GCNGC	2 cut(s)	531, 848
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	975
PscI	ACATGT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	975
PspFI	CCCAGC	2 cut(s)	92, 666
PspN4I	GGNNCC	3 cut(s)	20, 129, 977
PspPI	GGNCC	3 cut(s)	332, 747, 975
PspPPI	RGGWCCY	1 cut(s)	975
RseI	CAYNNNNRTG	2 cut(s)	453, 728
SaqAI	TTAA	4 cut(s)	390, 629, 659, 875
SatI	GCNGC	2 cut(s)	530, 847
Sau3AI	GATC	3 cut(s)	27, 79, 837
Sau96I	GGNCC	3 cut(s)	332, 747, 975
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	746
SduI	GDGCHC	3 cut(s)	93, 399, 781
SfaNI	GCATC	3 cut(s)	604, 643, 748
SinI	GGWCC	2 cut(s)	332, 975
SmiMI	CAYNNNNRTG	2 cut(s)	453, 728
Sse9I	AATT	3 cut(s)	272, 513, 876
SsiI	CCGC	3 cut(s)	195, 593, 920
SspMI	CTAG	2 cut(s)	228, 303
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	4 cut(s)	150, 477, 608, 826
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	2 cut(s)	674, 728
TasI	AATT	3 cut(s)	272, 513, 876
TfiI	GAWTC	2 cut(s)	620, 676
Tru1I	TTAA	4 cut(s)	390, 629, 659, 875
Tru9I	TTAA	4 cut(s)	390, 629, 659, 875
TscAI	CASTG	6 cut(s)	113, 118, 223, 406, 525, 890
TseFI	GTSAC	3 cut(s)	214, 360, 602
TseI	GCWGC	2 cut(s)	529, 846
Tsp45I	GTSAC	3 cut(s)	214, 360, 602
TspDTI	ATGAA	4 cut(s)	17, 390, 594, 746
TspGWI	ACGGA	2 cut(s)	197, 927
TspRI	CASTG	6 cut(s)	113, 118, 223, 406, 525, 890
VpaK11BI	GGWCC	2 cut(s)	332, 975
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	967
XspI	CTAG	2 cut(s)	228, 303
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.