Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005493

Physical Location & Seq

Genomic Coordinates Reverse (-)

19542420 .. 19545235

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGATTCCCAACCGCAACCGGAGCAGCAAGACCCAGAACCCAGAAGCTACTGGAAAAGATGGACCAAGCAGGACTTCTTCCCGGAACCCACTTTCCGCAACTTGAGTTCCTACAAAGACGCCCTCTCCCACACCCCCTCCCGCCTCAAAGACCGCCTCCTCAACCGCTCCTCCGACTCCTTCGAGCTCCTCCACCTGCCCAAGCAAAGCGAGCACCACATGCACCGCTGCCTCACCTGGTGGGACCTCATCTGGCTCGGCTTCGGCTCAGTCGTCGGCTCCGGCATTTTCGTCATCACCGGCGAGGCCACTCTCCTAGCCGGACCAGCCATTGTCTTGTCCTACGCCATCTCCGGCCTGTCGGCTCTGCTCTCTGTCCTCTGCTACACAGAATTCGCCGTCGAAGTTCCTGTTGCCGGAGGATCTTTCTCGTATCTTCGGATAGAATTGGGAGACTTCGTTGCATTCATTGCAGCCGGGAACATTCTCCTCGAGGCCATGGTGGGGGCGGCTGGGTTGGGCCGGTCGTGGACTTCTTACTTGGCCAGCATGATCAACACCGACAACACCGACTTTCTGAGGTTTCGGGTAAGCTCTCTGCCTGATGGGTTCAATCTGTTGGACCCAATTGCTGTTGTGGTGCTTCTGGTTGCTAATGGTATAGCAATGAGCGGGACGGCTCGGACTTCGATGCTGAATTGGATTGCTTCTATTGCTAGTGCATTGGTTATTCTGTTTATTATAGTTGTGGGTTTTATTTACGGCAAGACTGAGAATCTGCGCCCTTTTTTCCCGTATGGGGCAGAGGGTGTTTTCAAGGCTGCGGCTGTAGTTTATTGGTCTTATACTGGTTTTGACATGGTTGCGAACCTTGCGGAGGAAGTTAAGCAGCCCTCCAAGGATATACCAGTGGGTTTGATTGGTTCTATGAGTCTGATCACTGTAATTTATTGCTTGATGGCTTTGGCTTTGGTTATGATGCAGAAGTACACTGAGGTTAGTGCAGATGCTGCCTATTCGGTTGCTTTTACGGCTATTGGGATGAATTGGGCTAAGTATTTAGTGAGTATATGTGCCCTTAAGGGAATGACTACAAGCTTGCTGGTTGGATCTCTTGGGCAAGCTAGGTATACCACACAGATTGCAAGATCTCATATGATTTCACCCTGGTTCGCTCTGGTTCACCCGAGAACTGGAACCCCCATTTATGCTACTATGTTGGTGACCATAGCAAGTGCAATTGTGGCCTTCTTTACTAGTCTGGATGTGCTGTCGAGTGTGTTTTCTTTCAGTACACTCTCTATTTTCATGTGTGTGGCTATTGCATTGCTTGTGAGGCGGTATTATGTTAAGGATCTGACAGCTAAAAACGACCTGGTCAAGTTTCTTGCAAGTTTATTTGTTATAATTGGTTCTTCAATCGCAATTGCTGCACTTTGGAACACGGATGTGCGAGGTTGGGTTTGGTATGTTGTGGTTGGTGTGATTTGGTTTTCTGGGACTTTGTGGATGGCATTGCTTCCCAAGCAAAGAGTTGCCAAGGTTTGGAGTGTTCCACTAGTTCCGTGGGTGCCGGCATTGTCCATTGGAATTAATCTCTTCCTCATTGGGTCTCTGGGTTATGTTGCATTCTTGAGGTTTGCCATTTGCACTGCAGTAATGATTGTCTACTATTTGTTTGTTGGTGTGCATGCGACATATGATGTTGCTCACCAGATTGACCGACAAGAATCAAGAACTGAGGAGGGAAGTGCCAGTCAACGAGTACTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

591

Amino Acids

65.06

Weight (kDa)

8.09

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	78 - 496	8.5e-48	Amino acid permease
AA_permease	PF00324	83 - 504	1.3e-27	Amino acid permease
AA_permease_C	PF13906	516 - 565	1.5e-15	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55500
fragaria_vesca	FvH4_3g23790
malus_domestica	MD03G1190200.v1.1 MD11G1206700.v1.1
prunus_persica	Prupe.4G229800_v2.0.a1 Prupe.4G229800_v2.0.a1
pyrus_communis	pycom03g14300 pycom11g17980
rosa_chinensis	RchiOBHm_Chr5g0041921 RchiOBHm_Chr5g0041971 RchiOBHm_Chr5g0080011
rosa_laevigata	RLG00000034106 RLG00000036844
rosa_multiflora	Rmu_sc0009443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00038610
rosa_rugosa	Rorug05G0197400 Rorug05G0467700
rosa_samantha	Rh5AG282500 Rh5BG287400 Rh5BG287900 Rh5BG543400 Rh5CG319100 Rh5CG319700 Rh5CG566700 Rh5DG296200 Rh5DG296800 Rh5DG553300
rosa_wichuraiana	Rw0G001370 Rw5G048370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1406
AarI	CACCTGC	1 cut(s)	204
AbsI	CCTCGAGG	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	1570
AccB7I	CCANNNNNTGG	1 cut(s)	1545
AccBSI	CCGCTC	2 cut(s)	168, 672
AccI	GTMKAC	2 cut(s)	1130, 1668
AclWI	GGATC	3 cut(s)	430, 1117, 1362
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	989, 1294, 1767
AfiI	CCNNNNNNNGG	6 cut(s)	416, 504, 799, 877, 1193, 1545
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	3 cut(s)	613, 817, 1419
AhlI	ACTAGT	2 cut(s)	1256, 1558
AjnI	CCWGG	3 cut(s)	236, 1166, 1374
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AleI	CACNNNNGTG	1 cut(s)	1448
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	6 cut(s)	48, 187, 594, 1098, 1124, 1364
AluI	AGCT	6 cut(s)	48, 187, 594, 1098, 1124, 1364
Alw21I	GWGCWC	2 cut(s)	189, 216
Alw26I	GTCTC	2 cut(s)	447, 1617
AlwI	GGATC	3 cut(s)	430, 1117, 1362
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	2 cut(s)	491, 1186
AoxI	GGCC	6 cut(s)	306, 355, 495, 520, 543, 1245
ApeKI	GCWGC	7 cut(s)	25, 228, 473, 821, 889, 1010, 1430
ApoI	RAATTY	1 cut(s)	392
AseI	ATTAAT	1 cut(s)	1593
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	5 cut(s)	63, 244, 323, 520, 622
AsuC2I	CCSGG	2 cut(s)	83, 478
AsuHPI	GGTGA	6 cut(s)	226, 289, 1155, 1175, 1234, 1703
AvaI	CYCGRG	2 cut(s)	491, 1186
AvaII	GGWCC	4 cut(s)	63, 244, 323, 622
BaeGI	GKGCMC	1 cut(s)	1078
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	1570
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	189, 216
BbvI	GCAGC	7 cut(s)	37, 215, 485, 808, 901, 997, 1417
BccI	CCATC	5 cut(s)	54, 356, 599, 952, 1504
BceAI	ACGGC	4 cut(s)	383, 693, 778, 1047
BciT130I	CCWGG	3 cut(s)	238, 1168, 1376
BclI	TGATCA	2 cut(s)	552, 936
BcnI	CCSGG	2 cut(s)	83, 478
BcoDI	GTCTC	2 cut(s)	447, 1617
BcuI	ACTAGT	2 cut(s)	1256, 1558
BfaI	CTAG	5 cut(s)	317, 717, 1125, 1257, 1559
BfmI	CTRYAG	3 cut(s)	828, 1653, 1772
BfrI	CTTAAG	1 cut(s)	1079
BfuAI	ACCTGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	1148
BisI	GCNGC	9 cut(s)	26, 229, 474, 510, 822, 825, 890, 1011, 1431
BlsI	GCNGC	9 cut(s)	27, 230, 475, 511, 823, 826, 891, 1012, 1432
BmcAI	AGTACT	1 cut(s)	1767
Bme1390I	CCNGG	5 cut(s)	83, 238, 478, 1168, 1376
Bme18I	GGWCC	4 cut(s)	63, 244, 323, 622
BmeT110I	CYCGRG	2 cut(s)	491, 1186
BmgT120I	GGNCC	5 cut(s)	63, 244, 323, 520, 622
BmiI	GGNNCC	6 cut(s)	87, 245, 280, 624, 1198, 1572
BmrFI	CCNGG	5 cut(s)	83, 238, 478, 1168, 1376
BmsI	GCATC	3 cut(s)	681, 969, 997
BpuEI	CTTGAG	2 cut(s)	124, 1654
BpuMI	CCSGG	2 cut(s)	83, 478
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	1617
BsaJI	CCNNGG	5 cut(s)	498, 897, 1166, 1539, 1565
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	6 cut(s)	416, 504, 799, 877, 1193, 1545
Bse118I	RCCGGY	3 cut(s)	299, 522, 1573
Bse1I	ACTGG	5 cut(s)	56, 853, 908, 1198, 1755
Bse3DI	GCAATG	4 cut(s)	468, 672, 1325, 1514
BseBI	CCWGG	3 cut(s)	238, 1168, 1376
BseDI	CCNNGG	5 cut(s)	498, 897, 1166, 1539, 1565
BseGI	GGATG	4 cut(s)	1047, 1270, 1453, 1515
BseLI	CCNNNNNNNGG	6 cut(s)	416, 504, 799, 877, 1193, 1545
BseMI	GCAATG	4 cut(s)	468, 672, 1325, 1514
BseMII	CTCAG	5 cut(s)	282, 569, 762, 984, 1731
BseNI	ACTGG	5 cut(s)	56, 853, 908, 1198, 1755
BseRI	GAGGAG	5 cut(s)	149, 160, 179, 479, 1757
BseSI	GKGCMC	1 cut(s)	1078
BseXI	GCAGC	7 cut(s)	37, 215, 485, 808, 901, 997, 1417
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	2 cut(s)	1023, 1416
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	6 cut(s)	308, 357, 497, 522, 545, 1247
BshNI	GGYRCC	1 cut(s)	1570
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	189, 216
BsiHKCI	CYCGRG	2 cut(s)	491, 1186
BslFI	GGGAC	3 cut(s)	257, 688, 1513
BslI	CCNNNNNNNGG	6 cut(s)	416, 504, 799, 877, 1193, 1545
BsmAI	GTCTC	2 cut(s)	447, 1617
BsmFI	GGGAC	3 cut(s)	257, 688, 1513
BsmI	GAATGC	2 cut(s)	464, 1628
BsnI	GGCC	6 cut(s)	308, 357, 497, 522, 545, 1247
Bso31I	GGTCTC	1 cut(s)	1617
BsoBI	CYCGRG	2 cut(s)	491, 1186
Bsp1286I	GDGCHC	3 cut(s)	189, 216, 1078
Bsp143I	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
Bsp19I	CCATGG	1 cut(s)	498
BspANI	GGCC	6 cut(s)	308, 357, 497, 522, 545, 1247
BspCNI	CTCAG	5 cut(s)	281, 570, 763, 985, 1732
BspLI	GGNNCC	6 cut(s)	87, 245, 280, 624, 1198, 1572
BspMAI	CTGCAG	1 cut(s)	1657
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	3 cut(s)	430, 1117, 1362
BspT107I	GGYRCC	1 cut(s)	1570
BspTI	CTTAAG	1 cut(s)	1079
BspTNI	GGTCTC	1 cut(s)	1617
BsrBI	CCGCTC	2 cut(s)	168, 672
BsrDI	GCAATG	4 cut(s)	468, 672, 1325, 1514
BsrFI	RCCGGY	3 cut(s)	299, 522, 1573
BsrI	ACTGG	5 cut(s)	56, 853, 908, 1198, 1755
BssAI	RCCGGY	3 cut(s)	299, 522, 1573
BssECI	CCNNGG	5 cut(s)	498, 897, 1166, 1539, 1565
BssMI	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
BssNAI	GTATAC	1 cut(s)	1131
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	3 cut(s)	498, 897, 1539
Bst1107I	GTATAC	1 cut(s)	1131
Bst2UI	CCWGG	3 cut(s)	238, 1168, 1376
Bst4CI	ACNGT	1 cut(s)	943
Bst6I	CTCTTC	1 cut(s)	1604
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	1079
BstAPI	GCANNNNNTGC	4 cut(s)	220, 470, 1010, 1430
BstC8I	GCNNGC	6 cut(s)	212, 547, 1100, 1122, 1575, 1692
BstDEI	CTNAG	6 cut(s)	268, 578, 771, 993, 1053, 1740
BstDSI	CCRYGG	2 cut(s)	498, 1565
BstEII	GGTNACC	1 cut(s)	1222
BstENI	CCTNNNNNAGG	1 cut(s)	875
BstF5I	GGATG	4 cut(s)	1047, 1270, 1453, 1515
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	6 cut(s)	425, 555, 939, 1112, 1151, 1357
BstMAI	GTCTC	2 cut(s)	447, 1617
BstMBI	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
BstMCI	CGRYCG	1 cut(s)	527
BstNI	CCWGG	3 cut(s)	238, 1168, 1376
BstNSI	RCATGY	2 cut(s)	223, 1694
BstPI	GGTNACC	1 cut(s)	1222
BstSCI	CCNGG	5 cut(s)	81, 236, 476, 1166, 1374
BstSFI	CTRYAG	3 cut(s)	828, 1653, 1772
BstSLI	GKGCMC	1 cut(s)	1078
BstV1I	GCAGC	7 cut(s)	37, 215, 485, 808, 901, 997, 1417
BstX2I	RGATCY	4 cut(s)	422, 1109, 1148, 1354
BstYI	RGATCY	4 cut(s)	422, 1109, 1148, 1354
BstZ17I	GTATAC	1 cut(s)	1131
BsuRI	GGCC	6 cut(s)	308, 357, 497, 522, 545, 1247
BtgI	CCRYGG	2 cut(s)	498, 1565
BtsCI	GGATG	4 cut(s)	1047, 1270, 1453, 1515
BtsI	GCAGTG	1 cut(s)	1650
BtsIMutI	CAGTG	4 cut(s)	915, 939, 990, 1650
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	6 cut(s)	212, 547, 1100, 1122, 1575, 1692
CaiI	CAGNNNCTG	1 cut(s)	1010
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	3 cut(s)	299, 522, 1573
Cfr13I	GGNCC	5 cut(s)	63, 244, 323, 520, 622
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	2 cut(s)	236, 1374
Csp6I	GTAC	3 cut(s)	988, 1293, 1766
CspCI	CAANNNNNGTGG	2 cut(s)	1123, 1158
CviAII	CATG	6 cut(s)	220, 499, 550, 859, 1309, 1691
CviQI	GTAC	3 cut(s)	988, 1293, 1766
DdeI	CTNAG	6 cut(s)	268, 578, 771, 993, 1053, 1740
DpnI	GATC	6 cut(s)	424, 554, 938, 1111, 1150, 1356
DpnII	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
DraIII	CACNNNGTG	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	1604
EarI	CTCTTC	1 cut(s)	1604
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	498, 897, 1539
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	1617
Eco47I	GGWCC	4 cut(s)	63, 244, 323, 622
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	491, 1186
Eco91I	GGTNACC	1 cut(s)	1222
EcoICRI	GAGCTC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	1222
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	236, 1166, 1374
EcoT14I	CCWWGG	3 cut(s)	498, 897, 1539
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	498, 897, 1539
FaeI	CATG	6 cut(s)	223, 502, 553, 862, 1312, 1694
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	3 cut(s)	257, 688, 1513
FatI	CATG	6 cut(s)	219, 498, 549, 858, 1308, 1690
FauI	CCCGC	2 cut(s)	149, 665
FauNDI	CATATG	2 cut(s)	1155, 1699
FbaI	TGATCA	2 cut(s)	552, 936
FblI	GTMKAC	2 cut(s)	1130, 1668
Fnu4HI	GCNGC	9 cut(s)	26, 229, 474, 510, 822, 825, 890, 1011, 1431
FokI	GGATG	4 cut(s)	1054, 1277, 1460, 1522
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	9 cut(s)	26, 229, 474, 510, 822, 825, 890, 1011, 1431
FspBI	CTAG	5 cut(s)	317, 717, 1125, 1257, 1559
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	9 cut(s)	26, 229, 474, 510, 822, 825, 890, 1011, 1431
GsaI	CCCAGC	1 cut(s)	516
HaeIII	GGCC	6 cut(s)	308, 357, 497, 522, 545, 1247
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	6 cut(s)	223, 502, 553, 862, 1312, 1694
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	1760
HindII	GTYRAC	1 cut(s)	1760
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	5 cut(s)	5, 176, 775, 931, 1730
HphI	GGTGA	6 cut(s)	226, 289, 1155, 1175, 1234, 1703
Hpy166II	GTNNAC	7 cut(s)	531, 990, 1131, 1183, 1295, 1669, 1760
Hpy188I	TCNGA	6 cut(s)	175, 441, 579, 684, 936, 1359
Hpy188III	TCNNGA	3 cut(s)	1262, 1633, 1734
Hpy8I	GTNNAC	7 cut(s)	531, 990, 1131, 1183, 1295, 1669, 1760
Hpy99I	CGWCG	2 cut(s)	278, 404
HpyAV	CCTTC	2 cut(s)	190, 1258
HpyCH4III	ACNGT	1 cut(s)	943
HpyF3I	CTNAG	6 cut(s)	268, 578, 771, 993, 1053, 1740
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	223, 502, 553, 862, 1312, 1694
HspAI	GCGC	1 cut(s)	781
KroI	GCCGGC	1 cut(s)	1573
KroNI	GCCGGC	1 cut(s)	1575
Ksp22I	TGATCA	2 cut(s)	552, 936
Kzo9I	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
LmnI	GCTCC	4 cut(s)	22, 173, 192, 284
Lsp1109I	GCAGC	7 cut(s)	37, 215, 485, 808, 901, 997, 1417
LweI	GCATC	3 cut(s)	681, 969, 997
MabI	ACCWGGT	2 cut(s)	236, 1374
MaeI	CTAG	5 cut(s)	317, 717, 1125, 1257, 1559
MaeIII	GTNAC	1 cut(s)	1222
MalI	GATC	6 cut(s)	424, 554, 938, 1111, 1150, 1356
MbiI	CCGCTC	2 cut(s)	168, 672
MboI	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
MboII	GAAGA	4 cut(s)	70, 428, 1407, 1591
MfeI	CAATTG	3 cut(s)	627, 1239, 1425
MflI	RGATCY	4 cut(s)	422, 1109, 1148, 1354
MhlI	GDGCHC	3 cut(s)	189, 216, 1078
MlsI	TGGCCA	1 cut(s)	545
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	170, 940
MmeI	TCCRAC	3 cut(s)	198, 600, 1087
Mox20I	TGGCCA	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	1573
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	4 cut(s)	885, 1080, 1350, 1593
MslI	CAYNNNNRTG	2 cut(s)	1313, 1448
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	1079
MspR9I	CCNGG	5 cut(s)	83, 238, 478, 1168, 1376
MunI	CAATTG	3 cut(s)	627, 1239, 1425
Mva1269I	GAATGC	2 cut(s)	464, 1628
MvaI	CCWGG	3 cut(s)	238, 1168, 1376
NaeI	GCCGGC	1 cut(s)	1575
NciI	CCSGG	2 cut(s)	83, 478
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	2 cut(s)	1155, 1699
NdeII	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
NgoMIV	GCCGGC	1 cut(s)	1573
NlaIII	CATG	6 cut(s)	223, 502, 553, 862, 1312, 1694
NlaIV	GGNNCC	6 cut(s)	87, 245, 280, 624, 1198, 1572
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	1222
NspI	RCATGY	2 cut(s)	223, 1694
OliI	CACNNNNGTG	1 cut(s)	1448
PaeI	GCATGC	1 cut(s)	1694
PaeR7I	CTCGAG	1 cut(s)	491
PaqCI	CACCTGC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	2 cut(s)	464, 1628
PdiI	GCCGGC	1 cut(s)	1575
PfeI	GAWTC	3 cut(s)	5, 775, 1730
PflFI	GACNNNGTC	1 cut(s)	1376
PflMI	CCANNNNNTGG	1 cut(s)	1545
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	9 cut(s)	27, 230, 475, 511, 823, 826, 891, 1012, 1432
PleI	GAGTC	2 cut(s)	170, 939
PpsI	GAGTC	2 cut(s)	170, 939
PpuMI	RGGWCCY	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	1593
PsiI	TTATAA	1 cut(s)	1406
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	236, 1166, 1374
PspEI	GGTNACC	1 cut(s)	1222
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	236, 1166, 1374
PspN4I	GGNNCC	6 cut(s)	87, 245, 280, 624, 1198, 1572
PspPI	GGNCC	5 cut(s)	63, 244, 323, 520, 622
PspPPI	RGGWCCY	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	1657
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	4 cut(s)	422, 1109, 1148, 1354
PsyI	GACNNNGTC	1 cut(s)	1376
RsaI	GTAC	3 cut(s)	989, 1294, 1767
RsaNI	GTAC	3 cut(s)	988, 1293, 1766
RseI	CAYNNNNRTG	2 cut(s)	1313, 1448
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	885, 1080, 1350, 1593
SatI	GCNGC	9 cut(s)	26, 229, 474, 510, 822, 825, 890, 1011, 1431
Sau3AI	GATC	6 cut(s)	422, 552, 936, 1109, 1148, 1354
Sau96I	GGNCC	5 cut(s)	63, 244, 323, 520, 622
ScaI	AGTACT	1 cut(s)	1767
SchI	GAGTC	2 cut(s)	170, 940
ScrFI	CCNGG	5 cut(s)	83, 238, 478, 1168, 1376
SduI	GDGCHC	3 cut(s)	189, 216, 1078
SexAI	ACCWGGT	2 cut(s)	236, 1374
SfaNI	GCATC	3 cut(s)	681, 969, 997
SfcI	CTRYAG	3 cut(s)	828, 1653, 1772
Sfr274I	CTCGAG	1 cut(s)	491
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	4 cut(s)	63, 244, 323, 622
SlaI	CTCGAG	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	1313, 1448
SmlI	CTYRAG	4 cut(s)	103, 491, 1079, 1633
SmoI	CTYRAG	4 cut(s)	103, 491, 1079, 1633
SpeI	ACTAGT	2 cut(s)	1256, 1558
SphI	GCATGC	1 cut(s)	1694
SspMI	CTAG	5 cut(s)	317, 717, 1125, 1257, 1559
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	5 cut(s)	81, 236, 476, 1166, 1374
StyI	CCWWGG	3 cut(s)	498, 897, 1539
TaaI	ACNGT	1 cut(s)	943
TaqI	TCGA	5 cut(s)	183, 402, 492, 689, 1274
TaqII	GACCGA	1 cut(s)	1737
TatI	WGTACW	3 cut(s)	987, 1292, 1765
TauI	GCSGC	2 cut(s)	512, 827
TfiI	GAWTC	3 cut(s)	5, 775, 1730
Tru1I	TTAA	4 cut(s)	885, 1080, 1350, 1593
Tru9I	TTAA	4 cut(s)	885, 1080, 1350, 1593
TscAI	CASTG	4 cut(s)	915, 946, 997, 1657
TseFI	GTSAC	1 cut(s)	1222
TseI	GCWGC	7 cut(s)	25, 228, 473, 821, 889, 1010, 1430
Tsp45I	GTSAC	1 cut(s)	1222
TspDTI	ATGAA	3 cut(s)	457, 1058, 1297
TspGWI	ACGGA	2 cut(s)	1460, 1554
TspRI	CASTG	4 cut(s)	915, 946, 997, 1657
Tth111I	GACNNNGTC	1 cut(s)	1376
Van91I	CCANNNNNTGG	1 cut(s)	1545
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	4 cut(s)	63, 244, 323, 622
VspI	ATTAAT	1 cut(s)	1593
XagI	CCTNNNNNAGG	1 cut(s)	875
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	223, 1694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1563
XhoI	CTCGAG	1 cut(s)	491
XmiI	GTMKAC	2 cut(s)	1130, 1668
XspI	CTAG	5 cut(s)	317, 717, 1125, 1257, 1559
ZrmI	AGTACT	1 cut(s)	1767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.