AT5G56090

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001655
Physical Location & Seq
Forward (+)
22714471 .. 22716997
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56090.1

Sequence Viewer

Length: 1374 bp
ATGTTTCGGGCGGTTGGATCGGCTCTGAAGAGGAACAAAGAAGCGTTTAATGGAATTGCTCGAGGATTCACCACTTCGTCTCATCGAGTTTTCACTTCTAACATTACAGCTGCTTCTGTAACCTCTGCTTCGTCTTCTCCTTTAGCTGGAAACTCCTTCTATGGCTTGCGATCTCTGCTCAAGGGTCAAAATGCTTCAATGTTTAGGAGGATGTCAACTGTAGCGTCGATAAGCTCAGAGAGTAAAGAGGGTTTGAAGCTTCTTGTCACTGGAGGACCTCAAGCTCAGAAATGGGTTGGAATTTGGCTTTTTGGTTCGGCTGCTTGGGTTTTCAGCATGGTTGTACTTGGCGGTGTAACCCGATTAACTCGATCTGGTTTATCGATGACTGATTGGAAATTTACTGGTGAATTCCCTCCTCTGTCAGATGAAGCTTGGGCTAAGGAGTTTGAGAAATATAAGCAGTCACCTGAATATAAGCGTGTGAACAAAGGGATGAACCTTGAAGATTTTAAGTTCATATATTGGATGGAGTATGCTCATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTTTGCCGTTTTCTTATTTTCTGCGTAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGTGCTGGACAAGGTTTCATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCACCGTCTGAGTATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAGCTCACCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCTGAGTCACTGGCTTGGGTTCGCGGAGCAGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGCTTGATTGTTGGTATCACTGCAATTTCAGGAGCATTTGTTGCTGGAAATGATGCTGGTCGTGCATTCAACACATTTCCCAAAATGGGTGACACATGGATCCCAGATAATATATTTGAGATGAAACCACTTTTACGCAACTTTTTCGAGAACACAGCAACTGTTCAGCTTGATCATCGCCTTCTGGCAACCACAACATTAATCGCAATCGGAACAATGTGGTGGTTCACAAGGAAGCTAGACATACATCCAGCTGTTAAAGCTTTGATCGGAAGTACTGTTGGAATGACTGCTGTTCAGGTGACATTAGGTGTATCAACGCTTCTGAGTTATGTTCCGGTTTCACTAGGAAGTGCACACCAAGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTCAATCACACTCTTCGGAGGCCATCACCTTCTCTTCTCAAATCTCTTCCACAAGTTGCTAAATCAAATTTCAGCTAA

Protein Analysis

457

Amino Acids

50.13

Weight (kDa)

10.11

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 101 - 430 4.7e-114 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 809
AccII CGCG 1 cut(s) 861
AciI CCGC 4 cut(s) 11, 351, 807, 861
AclWI GGATC 3 cut(s) 25, 991, 1004
AcsI RAATTY 4 cut(s) 300, 398, 410, 1363
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 345, 1174
AfiI CCNNNNNNNGG 2 cut(s) 146, 983
AgsI TTSAA 4 cut(s) 198, 256, 506, 967
Alw21I GWGCWC 1 cut(s) 1255
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 1251
AlwI GGATC 3 cut(s) 25, 991, 1004
AlwNI CAGNNNCTG 1 cut(s) 1058
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 1316
ApaLI GTGCAC 1 cut(s) 1251
ApeKI GCWGC 4 cut(s) 110, 320, 758, 866
ApoI RAATTY 4 cut(s) 300, 398, 410, 1363
AseI ATTAAT 1 cut(s) 1097
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 275, 804
AsuHPI GGTGA 7 cut(s) 61, 419, 459, 755, 998, 1210, 1314
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 275, 804
BaeGI GKGCMC 1 cut(s) 1255
BamHI GGATCC 1 cut(s) 996
BarI GAAGNNNNNNTAC 2 cut(s) 1203, 1235
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 1255
BbvCI CCTCAGC 1 cut(s) 772
BbvI GCAGC 4 cut(s) 97, 307, 770, 878
BccI CCATC 3 cut(s) 523, 682, 1327
BceAI ACGGC 1 cut(s) 568
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 1136, 1244
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 4 cut(s) 111, 321, 759, 867
BlsI GCNGC 4 cut(s) 112, 322, 760, 868
BmcAI AGTACT 1 cut(s) 1174
Bme18I GGWCC 2 cut(s) 275, 804
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 275, 804
BmiI GGNNCC 2 cut(s) 711, 998
BmsI GCATC 2 cut(s) 940, 1278
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 2 cut(s) 441, 772
BpuEI CTTGAG 2 cut(s) 164, 264
Bsa29I ATCGAT 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 1234
BsaXI ACNNNNNCTCC 4 cut(s) 701, 731, 921, 951
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 983
Bse1I ACTGG 4 cut(s) 274, 409, 852, 893
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 734
BseGI GGATG 5 cut(s) 216, 501, 534, 693, 1144
BseLI CCNNNNNNNGG 2 cut(s) 146, 983
BseMII CTCAG 6 cut(s) 249, 299, 711, 786, 831, 1214
BseNI ACTGG 4 cut(s) 274, 409, 852, 893
BseRI GAGGAG 2 cut(s) 408, 722
BseSI GKGCMC 1 cut(s) 1255
BseXI GCAGC 4 cut(s) 97, 307, 770, 878
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 1 cut(s) 1318
BshVI ATCGAT 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 1255
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 1235
BslI CCNNNNNNNGG 2 cut(s) 146, 983
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 1 cut(s) 1318
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 1255
Bsp143I GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
BspACI CCGC 4 cut(s) 11, 351, 807, 861
BspANI GGCC 1 cut(s) 1318
BspCNI CTCAG 6 cut(s) 248, 298, 712, 785, 832, 1215
BspDI ATCGAT 1 cut(s) 383
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 711, 998
BspPI GGATC 3 cut(s) 25, 991, 1004
BsrBI CCGCTC 1 cut(s) 809
BsrI ACTGG 4 cut(s) 274, 409, 852, 893
BssECI CCNNGG 1 cut(s) 734
BssMI GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
Bst4CI ACNGT 5 cut(s) 220, 717, 752, 1060, 1177
Bst6I CTCTTC 5 cut(s) 23, 550, 1314, 1335, 1347
BstAPI GCANNNNNTGC 1 cut(s) 938
BstC8I GCNNGC 2 cut(s) 167, 885
BstDEI CTNAG 7 cut(s) 235, 285, 441, 720, 772, 840, 1223
BstF5I GGATG 5 cut(s) 216, 501, 534, 693, 1144
BstFNI CGCG 1 cut(s) 861
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 6 cut(s) 20, 173, 374, 999, 1072, 1167
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
BstMWI GCNNNNNNNGC 6 cut(s) 175, 659, 938, 959, 1157, 1259
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 1255
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 4 cut(s) 97, 307, 770, 878
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 996
BstYI RGATCY 1 cut(s) 996
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 1 cut(s) 1318
BsuTUI ATCGAT 1 cut(s) 383
BtgZI GCGATG 1 cut(s) 1058
BtsCI GGATG 5 cut(s) 216, 501, 534, 693, 1144
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 267, 845, 915
Cac8I GCNNGC 2 cut(s) 167, 885
CaiI CAGNNNCTG 1 cut(s) 1058
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 2 cut(s) 275, 804
ClaI ATCGAT 1 cut(s) 383
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 344, 1173
CviAII CATG 3 cut(s) 337, 571, 993
CviQI GTAC 2 cut(s) 344, 1173
DdeI CTNAG 7 cut(s) 235, 285, 441, 720, 772, 840, 1223
DpnI GATC 6 cut(s) 19, 172, 373, 998, 1071, 1166
DpnII GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
Eam1104I CTCTTC 5 cut(s) 23, 550, 1314, 1335, 1347
EarI CTCTTC 5 cut(s) 23, 550, 1314, 1335, 1347
Eco47I GGWCC 2 cut(s) 275, 804
Eco57I CTGAAG 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 340, 574, 996
FatI CATG 3 cut(s) 336, 570, 992
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 4 cut(s) 111, 321, 759, 867
FokI GGATG 5 cut(s) 223, 508, 541, 700, 1131
Fsp4HI GCNGC 4 cut(s) 111, 321, 759, 867
FspBI CTAG 2 cut(s) 1136, 1244
GlaI GCGC 1 cut(s) 654
GluI GCNGC 4 cut(s) 111, 321, 759, 867
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 1318
HapII CCGG 1 cut(s) 1235
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 655
Hin1II CATG 3 cut(s) 340, 574, 996
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 5 cut(s) 257, 432, 881, 898, 1158
HinfI GANTC 3 cut(s) 66, 567, 842
HpaII CCGG 1 cut(s) 1235
HphI GGTGA 7 cut(s) 61, 419, 459, 755, 998, 1210, 1314
Hpy166II GTNNAC 5 cut(s) 216, 487, 794, 1125, 1253
Hpy188I TCNGA 9 cut(s) 27, 238, 288, 427, 721, 1109, 1169, 1224, 1314
Hpy188III TCNNGA 3 cut(s) 802, 927, 1045
Hpy8I GTNNAC 5 cut(s) 216, 487, 794, 1125, 1253
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 166, 1088, 1335
HpyCH4III ACNGT 5 cut(s) 220, 717, 752, 1060, 1177
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 5 cut(s) 758, 887, 920, 962, 1253
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 659, 938, 959, 1157, 1259
HpyF3I CTNAG 7 cut(s) 235, 285, 441, 720, 772, 840, 1223
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 3 cut(s) 340, 574, 996
HspAI GCGC 1 cut(s) 653
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
LmnI GCTCC 4 cut(s) 709, 863, 929, 1265
Lsp1109I GCAGC 4 cut(s) 97, 307, 770, 878
LweI GCATC 2 cut(s) 940, 1278
MaeI CTAG 2 cut(s) 1136, 1244
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 7 cut(s) 118, 265, 355, 465, 843, 986, 1198
MalI GATC 6 cut(s) 19, 172, 373, 998, 1071, 1166
MbiI CCGCTC 1 cut(s) 809
MboI GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
MboII GAAGA 8 cut(s) 40, 126, 518, 567, 889, 1301, 1322, 1334
MflI RGATCY 1 cut(s) 996
MhlI GDGCHC 1 cut(s) 1255
MluCI AATT 6 cut(s) 54, 300, 398, 410, 921, 1363
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 2 cut(s) 277, 1159
MseI TTAA 7 cut(s) 48, 365, 513, 693, 1097, 1155, 1271
MslI CAYNNNNRTG 1 cut(s) 1286
MspA1I CMGCKG 3 cut(s) 110, 839, 1151
MspI CCGG 1 cut(s) 1235
Mva1269I GAATGC 1 cut(s) 962
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 6 cut(s) 175, 659, 938, 959, 1157, 1259
NdeII GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
NlaIII CATG 3 cut(s) 340, 574, 996
NlaIV GGNNCC 2 cut(s) 711, 998
NmuCI GTSAC 5 cut(s) 265, 465, 843, 986, 1198
PaeR7I CTCGAG 1 cut(s) 60
PctI GAATGC 1 cut(s) 962
PfeI GAWTC 2 cut(s) 66, 567
PkrI GCNGC 4 cut(s) 112, 322, 760, 868
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
PpuMI RGGWCCY 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 1097
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 711, 998
PspPI GGNCC 2 cut(s) 275, 804
PspPPI RGGWCCY 1 cut(s) 275
PspXI VCTCGAGB 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 1058
PsuI RGATCY 1 cut(s) 996
PvuII CAGCTG 3 cut(s) 110, 839, 1151
RsaI GTAC 2 cut(s) 345, 1174
RsaNI GTAC 2 cut(s) 344, 1173
RseI CAYNNNNRTG 1 cut(s) 1286
SaqAI TTAA 7 cut(s) 48, 365, 513, 693, 1097, 1155, 1271
SatI GCNGC 4 cut(s) 111, 321, 759, 867
Sau3AI GATC 6 cut(s) 17, 170, 371, 996, 1069, 1164
Sau96I GGNCC 2 cut(s) 275, 804
ScaI AGTACT 1 cut(s) 1174
SchI GAGTC 1 cut(s) 851
SduI GDGCHC 1 cut(s) 1255
SfaNI GCATC 2 cut(s) 940, 1278
SfcI CTRYAG 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 2 cut(s) 275, 804
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 1286
SmlI CTYRAG 3 cut(s) 60, 179, 279
SmoI CTYRAG 3 cut(s) 60, 179, 279
Sse9I AATT 6 cut(s) 54, 300, 398, 410, 921, 1363
SsiI CCGC 4 cut(s) 11, 351, 807, 861
SspMI CTAG 2 cut(s) 1136, 1244
TaaI ACNGT 5 cut(s) 220, 717, 752, 1060, 1177
TaiI ACGT 1 cut(s) 625
TaqI TCGA 7 cut(s) 61, 85, 227, 370, 383, 544, 1044
TasI AATT 6 cut(s) 54, 300, 398, 410, 921, 1363
TatI WGTACW 2 cut(s) 343, 1172
TfiI GAWTC 2 cut(s) 66, 567
Tru1I TTAA 7 cut(s) 48, 365, 513, 693, 1097, 1155, 1271
Tru9I TTAA 7 cut(s) 48, 365, 513, 693, 1097, 1155, 1271
TscAI CASTG 3 cut(s) 274, 852, 922
TseFI GTSAC 5 cut(s) 265, 465, 843, 986, 1198
TseI GCWGC 4 cut(s) 110, 320, 758, 866
Tsp45I GTSAC 5 cut(s) 265, 465, 843, 986, 1198
TspDTI ATGAA 5 cut(s) 444, 508, 512, 664, 1034
TspRI CASTG 3 cut(s) 274, 852, 922
VneI GTGCAC 1 cut(s) 1251
VpaK11BI GGWCC 2 cut(s) 275, 804
VspI ATTAAT 1 cut(s) 1097
XapI RAATTY 4 cut(s) 300, 398, 410, 1363
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 2 cut(s) 1136, 1244
ZrmI AGTACT 1 cut(s) 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.