Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001655

Physical Location & Seq

Genomic Coordinates Reverse (-)

24321453 .. 24326354

Gene Structure 4902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGTTTCGGAGCCGAGCGATCGCTATGTTTGTGAAGAAGAATAGCAAGGCTCTCTACAATGTGAGGGCATCTAGGGTTTCCAATGAGGAGGCTACCTACCGCCTATTCTCTACTGGGCTCACAAGGAAATGCTCCCCATCTTTCTCCAAGGGTAGCTATGTATCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATCAAAGATAAGGAGGGATTGAAGTTTCTTGTAAACGGAGGCCCTCGTGCTCAGAAATTGATTGGCATTTGGCTTTTCGGCTCCGCTGCATGGGTGTTTAGCATGGTGATACTTGGAGGTGCTACACGACTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCGCCTCTCTCCGATGAAGACTGGTTGATTGAGTTCCAAAAGTACAAGCAATCCCCTGAATATAAGCGTGTAAATAAAGGGATGAGTATTGAAGACTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGCTTTGCCATTCTCATATTTTCTCCGTAAGGGGTACATTACCTTACAACTTGGACTGAGACTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAGGGTCTAATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTGTGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCTGCTGAATCTGTAGCCTGGGTTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGTTTACTGGTTGGGATTACTGCTATCTCAGGAGCATTTGTTGCCGGGAATGATGCTGGACATGCTTATAATACTTTTCCCAAGATGGGCGACAGATGGATCCCAGAGGATGTTTTTGACATGAAGCCACTAATCCGGAACTTCTTTGAGAATACATCTACTGTGCAGCTTGACCACCGTATCCTTGCAACTGCAACTTTATTTTCAATTGTCGCTTTGTGGTGGTCAACAAGGAAGTTTGACATACACCCTGCAGTTCGATCGTTGATTGGAACTACTGTTGGCATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCGTATGTGCCTGTTGAGCTTGGCACTGCACATCAAGCTGGGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

444

Amino Acids

49.12

Weight (kDa)

9.98

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX15-CtaA	PF02628	90 - 420	3.1e-113	Cytochrome oxidase assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56090
fragaria_vesca	FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_3g41910
malus_domestica	MD02G1271400.v1.1 MD07G1040600.v1.1
prunus_persica	Prupe.4G230100_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1
pyrus_communis	pycom02g23200
rosa_chinensis	RchiOBHm_Chr5g0075121 RchiOBHm_Chr6g0267391
rosa_laevigata	RLG00000014008 RLG00000014012 RLG00000036531
rosa_multiflora	Rmu_sc0000746.1_g000001 Rmu_ssc0000217.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006500 Rroxscaffold_7G00200820
rosa_rugosa	Rorug05G0436400 Rorug05G0436500 Rorug06G0032200 Rorug06G0032300 Rorug06G0032300
rosa_samantha	Rh5AG493700 Rh5BG515200 Rh5CG539000 Rh5DG527700 Rh6AG153700 Rh6CG149400 Rh6DG137800
rosa_wichuraiana	Rw5G045800 Rw6G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	933
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	811
AccIII	TCCGGA	1 cut(s)	999
AciI	CCGC	3 cut(s)	100, 285, 383
AclWI	GGATC	3 cut(s)	958, 971, 1252
AcsI	RAATTY	2 cut(s)	365, 482
AcuI	CTGAAG	2 cut(s)	723, 1145
AdeI	CACNNNGTG	1 cut(s)	1276
AfaI	GTAC	2 cut(s)	425, 578
AfiI	CCNNNNNNNGG	2 cut(s)	291, 950
AgsI	TTSAA	5 cut(s)	223, 351, 473, 481, 1071
AjnI	CCWGG	1 cut(s)	818
AluBI	AGCT	5 cut(s)	156, 728, 1033, 1210, 1229
AluI	AGCT	5 cut(s)	156, 728, 1033, 1210, 1229
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	595, 841
AlwI	GGATC	3 cut(s)	958, 971, 1252
AlwNI	CAGNNNCTG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	999
AoxI	GGCC	3 cut(s)	241, 760, 1156
ApeKI	GCWGC	4 cut(s)	287, 725, 833, 1030
ApoI	RAATTY	2 cut(s)	365, 482
AsiSI	GCGATCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	910
AsuHPI	GGTGA	3 cut(s)	319, 722, 1281
BaeI	ACNNNNGTAYC	2 cut(s)	1027, 1060
BamHI	GGATCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	405, 480
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	274, 737, 820, 1042
BccI	CCATC	7 cut(s)	145, 490, 649, 943, 954, 1294, 1300
BcgI	CGANNNNNNTGC	2 cut(s)	1107, 1141
BciT130I	CCWGG	1 cut(s)	820
BciVI	GTATCC	1 cut(s)	1055
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	595, 841
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	3 cut(s)	195, 813, 1116
BfuAI	ACCTGC	1 cut(s)	811
BfuI	GTATCC	1 cut(s)	1055
BisI	GCNGC	4 cut(s)	288, 726, 834, 1031
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	4 cut(s)	289, 727, 835, 1032
Bme1390I	CCNGG	2 cut(s)	820, 910
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	4 cut(s)	11, 283, 678, 965
BmrFI	CCNGG	2 cut(s)	820, 910
BmrI	ACTGGG	3 cut(s)	123, 381, 1181
BmsI	GCATC	4 cut(s)	77, 210, 692, 907
BmuI	ACTGGG	3 cut(s)	123, 381, 1181
BpiI	GAAGAC	2 cut(s)	405, 480
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	1299
BpuMI	CCSGG	1 cut(s)	910
BsaJI	CCNNGG	3 cut(s)	147, 622, 819
BsaWI	WCCGGW	1 cut(s)	999
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 950
Bse1I	ACTGG	7 cut(s)	118, 376, 407, 497, 778, 876, 1176
BseAI	TCCGGA	1 cut(s)	999
BseBI	CCWGG	1 cut(s)	820
BseDI	CCNNGG	3 cut(s)	147, 622, 819
BseGI	GGATG	5 cut(s)	468, 501, 660, 979, 1292
BseLI	CCNNNNNNNGG	2 cut(s)	291, 950
BseMII	CTCAG	5 cut(s)	266, 590, 678, 710, 906
BseNI	ACTGG	7 cut(s)	118, 376, 407, 497, 778, 876, 1176
BseRI	GAGGAG	2 cut(s)	101, 689
BseXI	GCAGC	4 cut(s)	274, 737, 820, 1042
BseYI	CCCAGC	2 cut(s)	629, 1229
BsgI	GTGCAG	2 cut(s)	1049, 1203
Bsh1285I	CGRYCG	2 cut(s)	21, 1127
BshFI	GGCC	3 cut(s)	243, 762, 1158
BsiEI	CGRYCG	2 cut(s)	21, 1127
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	909, 1000
BslI	CCNNNNNNNGG	2 cut(s)	291, 950
BsmAI	GTCTC	2 cut(s)	595, 841
BsnI	GGCC	3 cut(s)	243, 762, 1158
Bsp1286I	GDGCHC	2 cut(s)	120, 253
Bsp13I	TCCGGA	1 cut(s)	999
Bsp143I	GATC	5 cut(s)	18, 338, 963, 1124, 1257
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	3 cut(s)	100, 285, 383
BspANI	GGCC	3 cut(s)	243, 762, 1158
BspCNI	CTCAG	5 cut(s)	265, 591, 679, 709, 905
BspEI	TCCGGA	1 cut(s)	999
BspLI	GGNNCC	4 cut(s)	11, 283, 678, 965
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	958, 971, 1252
BspQI	GCTCTTC	1 cut(s)	861
BsrI	ACTGG	7 cut(s)	118, 376, 407, 497, 778, 876, 1176
BssECI	CCNNGG	3 cut(s)	147, 622, 819
BssMI	GATC	5 cut(s)	18, 338, 963, 1124, 1257
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	147, 622
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	820
Bst4CI	ACNGT	5 cut(s)	187, 758, 1027, 1043, 1144
Bst6I	CTCTTC	4 cut(s)	618, 839, 861, 1250
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	681, 1156
BstDEI	CTNAG	5 cut(s)	252, 599, 687, 696, 892
BstF5I	GGATG	5 cut(s)	468, 501, 660, 979, 1292
BstKTI	GATC	5 cut(s)	21, 341, 966, 1127, 1260
BstMAI	GTCTC	2 cut(s)	595, 841
BstMBI	GATC	5 cut(s)	18, 338, 963, 1124, 1257
BstMCI	CGRYCG	2 cut(s)	21, 1127
BstMWI	GCNNNNNNNGC	6 cut(s)	626, 905, 926, 1155, 1207, 1226
BstNI	CCWGG	1 cut(s)	820
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	2 cut(s)	818, 908
BstSFI	CTRYAG	3 cut(s)	195, 813, 1116
BstV1I	GCAGC	4 cut(s)	274, 737, 820, 1042
BstV2I	GAAGAC	2 cut(s)	405, 480
BstX2I	RGATCY	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	1055
BsuRI	GGCC	3 cut(s)	243, 762, 1158
BtsCI	GGATG	5 cut(s)	468, 501, 660, 979, 1292
BtsI	GCAGTG	1 cut(s)	1215
BtsIMutI	CAGTG	3 cut(s)	183, 1169, 1215
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	681, 1156
CaiI	CAGNNNCTG	1 cut(s)	686
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	424, 577
CviAII	CATG	7 cut(s)	291, 304, 790, 827, 926, 985, 1150
CviQI	GTAC	2 cut(s)	424, 577
DdeI	CTNAG	5 cut(s)	252, 599, 687, 696, 892
DpnI	GATC	5 cut(s)	20, 340, 965, 1126, 1259
DpnII	GATC	5 cut(s)	18, 338, 963, 1124, 1257
DraIII	CACNNNGTG	1 cut(s)	1276
Eam1104I	CTCTTC	4 cut(s)	618, 839, 861, 1250
EarI	CTCTTC	4 cut(s)	618, 839, 861, 1250
EciI	GGCGGA	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	147, 622
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	1179
Eco57I	CTGAAG	2 cut(s)	723, 1145
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	818
EcoRV	GATATC	1 cut(s)	1179
EcoT14I	CCWWGG	2 cut(s)	147, 622
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	147, 622
FaeI	CATG	7 cut(s)	294, 307, 793, 830, 929, 988, 1153
FatI	CATG	7 cut(s)	290, 303, 789, 826, 925, 984, 1149
Fnu4HI	GCNGC	4 cut(s)	288, 726, 834, 1031
FokI	GGATG	5 cut(s)	475, 508, 667, 986, 1279
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	4 cut(s)	288, 726, 834, 1031
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	288, 726, 834, 1031
GsaI	CCCAGC	2 cut(s)	633, 1233
HaeIII	GGCC	3 cut(s)	243, 762, 1158
HapII	CCGG	2 cut(s)	909, 1000
Hin1II	CATG	7 cut(s)	294, 307, 793, 830, 929, 988, 1153
HincII	GTYRAC	1 cut(s)	1092
HindII	GTYRAC	1 cut(s)	1092
HinfI	GANTC	2 cut(s)	809, 1240
HpaII	CCGG	2 cut(s)	909, 1000
HphI	GGTGA	3 cut(s)	319, 722, 1281
Hpy166II	GTNNAC	5 cut(s)	183, 235, 771, 869, 1092
Hpy188I	TCNGA	4 cut(s)	9, 255, 394, 688
Hpy188III	TCNNGA	2 cut(s)	894, 1000
Hpy8I	GTNNAC	5 cut(s)	183, 235, 771, 869, 1092
HpyAV	CCTTC	4 cut(s)	516, 1169, 1271, 1307
HpyCH4III	ACNGT	5 cut(s)	187, 758, 1027, 1043, 1144
HpyCH4V	TGCA	8 cut(s)	290, 506, 836, 1030, 1052, 1058, 1118, 1220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	626, 905, 926, 1155, 1207, 1226
HpyF3I	CTNAG	5 cut(s)	252, 599, 687, 696, 892
Hsp92II	CATG	7 cut(s)	294, 307, 793, 830, 929, 988, 1153
Kpn2I	TCCGGA	1 cut(s)	999
Kzo9I	GATC	5 cut(s)	18, 338, 963, 1124, 1257
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	5 cut(s)	9, 137, 287, 676, 896
Lsp1109I	GCAGC	4 cut(s)	274, 737, 820, 1042
LweI	GCATC	4 cut(s)	77, 210, 692, 907
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	1165
MalI	GATC	5 cut(s)	20, 340, 965, 1126, 1259
MboI	GATC	5 cut(s)	18, 338, 963, 1124, 1257
MboII	GAAGA	8 cut(s)	46, 49, 410, 485, 605, 848, 856, 1237
MfeI	CAATTG	1 cut(s)	1071
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	2 cut(s)	120, 253
MluCI	AATT	5 cut(s)	257, 365, 482, 642, 1071
MlyI	GAGTC	1 cut(s)	1234
MroI	TCCGGA	1 cut(s)	999
MseI	TTAA	2 cut(s)	660, 1302
MslI	CAYNNNNRTG	1 cut(s)	1253
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	909, 1000
MspR9I	CCNGG	2 cut(s)	820, 910
MunI	CAATTG	1 cut(s)	1071
MvaI	CCWGG	1 cut(s)	820
MwoI	GCNNNNNNNGC	6 cut(s)	626, 905, 926, 1155, 1207, 1226
NciI	CCSGG	1 cut(s)	910
NdeII	GATC	5 cut(s)	18, 338, 963, 1124, 1257
NlaIII	CATG	7 cut(s)	294, 307, 793, 830, 929, 988, 1153
NlaIV	GGNNCC	4 cut(s)	11, 283, 678, 965
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	1165
NspI	RCATGY	1 cut(s)	929
PaqCI	CACCTGC	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	809
PkrI	GCNGC	4 cut(s)	289, 727, 835, 1032
Ple19I	CGATCG	2 cut(s)	21, 1127
PleI	GAGTC	1 cut(s)	1234
PpsI	GAGTC	1 cut(s)	1234
PsiI	TTATAA	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	818
PspFI	CCCAGC	2 cut(s)	629, 1229
PspGI	CCWGG	1 cut(s)	818
PspN4I	GGNNCC	4 cut(s)	11, 283, 678, 965
PspPI	GGNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	807, 839
PstI	CTGCAG	1 cut(s)	1120
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	963
PvuI	CGATCG	2 cut(s)	21, 1127
RgaI	GCGATCGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	425, 578
RsaNI	GTAC	2 cut(s)	424, 577
RseI	CAYNNNNRTG	1 cut(s)	1253
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	660, 1302
SatI	GCNGC	4 cut(s)	288, 726, 834, 1031
Sau3AI	GATC	5 cut(s)	18, 338, 963, 1124, 1257
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	1234
ScrFI	CCNGG	2 cut(s)	820, 910
SduI	GDGCHC	2 cut(s)	120, 253
SfaAI	GCGATCGC	1 cut(s)	21
SfaNI	GCATC	4 cut(s)	77, 210, 692, 907
SfcI	CTRYAG	3 cut(s)	195, 813, 1116
SgfI	GCGATCGC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	1253
SmlI	CTYRAG	1 cut(s)	1314
SmoI	CTYRAG	1 cut(s)	1314
Sse9I	AATT	5 cut(s)	257, 365, 482, 642, 1071
SsiI	CCGC	3 cut(s)	100, 285, 383
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	818, 908
StyI	CCWWGG	2 cut(s)	147, 622
TaaI	ACNGT	5 cut(s)	187, 758, 1027, 1043, 1144
TaqI	TCGA	1 cut(s)	1123
TasI	AATT	5 cut(s)	257, 365, 482, 642, 1071
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	2 cut(s)	660, 1302
Tru9I	TTAA	2 cut(s)	660, 1302
TscAI	CASTG	3 cut(s)	190, 1176, 1222
TseFI	GTSAC	1 cut(s)	1165
TseI	GCWGC	4 cut(s)	287, 725, 833, 1030
Tsp45I	GTSAC	1 cut(s)	1165
TspDTI	ATGAA	3 cut(s)	411, 815, 1001
TspGWI	ACGGA	2 cut(s)	252, 557
TspRI	CASTG	3 cut(s)	190, 1176, 1222
XapI	RAATTY	2 cut(s)	365, 482
XceI	RCATGY	1 cut(s)	929
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.