RchiOBHm_Chr6g0267391

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001655
Physical Location & Seq
Reverse (-)
24082854 .. 24086650
3797 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23983

Sequence Viewer

Length: 1335 bp
ATGTTTCGGAGCCGAGTGATCGCGTTGTTTGTGAAGAAGAATAGCAAGGCTCTCTACAACGTGAGGGCATCTAGGGTTTCCAATGAGGAGGCTACCTACCGCCTATTCTCTACTGGGCTCACAAGGAAATGCTCCCCATCTTTCTCCAAGGGTAGCTATGCATCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATCAAAGATAAGGAGGGATTGAAGTTTCTTGTAAACGGAGGACCTCGTGCTCAGAAATTGATTGGCATTTGGCTTTTTGGCTCTGCTGCATGGGTGTTTAGCATGGTGATACTTGGAGGTGCTACACGACTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCGCCTCTCTCCGATGAAGACTGGTTGATTGAGTTCGAGAAGTACAAGCAATCCCCTGAATATAAGCGTGTAAATAAAGGGATGAGTATTGAAGACTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGCTTTGCCATTCTCATATTTTCTTCGTAAGGGGTACATTACCTTACAACTTGGACTGAGACTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAGGGTCTAATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTGTGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCTGCTGAATCTGTAGCCTGGGTTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGCTTACTGGTTGGGCTTACTGCTATCTCAGGAGCATTTGTTGCCGGGAATGATGCTGGACATGCTTATAATACTTTTCCCAAGATGGGCGACAGATGGATCCCAGAGGATGTTTTTGACATGAAGCCACTAATCCGGAACTTCTTTGAGAATACATCTACTGTGCAGCTTGACCACCGTATCCTTGCAACTGCAACTTTATTTTCAATTGTCGCTTTGTGGTGGTCAACAAGGAAGTTTGACATACACCCTGCAGTTCGATCGTTGATTGGAACTACTGTTGGCATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCGTATGTGCCTGTTGAGCTTGGCACTGCACATCAAGCTGGGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Protein Analysis

444

Amino Acids

49.1

Weight (kDa)

9.93

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 90 - 420 2e-113 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 1 cut(s) 811
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 999
AciI CCGC 2 cut(s) 100, 383
AclWI GGATC 3 cut(s) 958, 971, 1252
AcsI RAATTY 2 cut(s) 365, 482
AcuI CTGAAG 2 cut(s) 723, 1145
AdeI CACNNNGTG 1 cut(s) 1276
AfaI GTAC 2 cut(s) 425, 578
AfiI CCNNNNNNNGG 1 cut(s) 950
AgsI TTSAA 5 cut(s) 223, 351, 473, 481, 1071
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 6 cut(s) 156, 728, 867, 1033, 1210, 1229
AluI AGCT 6 cut(s) 156, 728, 867, 1033, 1210, 1229
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 595, 841
AlwI GGATC 3 cut(s) 958, 971, 1252
AlwNI CAGNNNCTG 1 cut(s) 686
Aor13HI TCCGGA 1 cut(s) 999
AoxI GGCC 2 cut(s) 760, 1156
ApeKI GCWGC 4 cut(s) 287, 725, 833, 1030
ApoI RAATTY 2 cut(s) 365, 482
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 3 cut(s) 319, 722, 1281
AvaII GGWCC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 1027, 1060
BamHI GGATCC 1 cut(s) 963
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 405, 480
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 4 cut(s) 274, 737, 820, 1042
BccI CCATC 7 cut(s) 145, 490, 649, 943, 954, 1294, 1300
BcgI CGANNNNNNTGC 2 cut(s) 1107, 1141
BciT130I CCWGG 1 cut(s) 820
BciVI GTATCC 1 cut(s) 1055
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 2 cut(s) 595, 841
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 3 cut(s) 195, 813, 1116
BfuAI ACCTGC 1 cut(s) 811
BfuI GTATCC 1 cut(s) 1055
BisI GCNGC 4 cut(s) 288, 726, 834, 1031
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 4 cut(s) 289, 727, 835, 1032
Bme1390I CCNGG 2 cut(s) 820, 910
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 11, 678, 965
BmrFI CCNGG 2 cut(s) 820, 910
BmrI ACTGGG 3 cut(s) 123, 381, 1181
BmsI GCATC 5 cut(s) 77, 170, 210, 692, 907
BmuI ACTGGG 3 cut(s) 123, 381, 1181
BpiI GAAGAC 2 cut(s) 405, 480
BplI GAGNNNNNCTC 2 cut(s) 838, 870
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 1299
BpuMI CCSGG 1 cut(s) 910
BsaJI CCNNGG 3 cut(s) 147, 622, 819
BsaWI WCCGGW 1 cut(s) 999
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 950
Bse1I ACTGG 7 cut(s) 118, 376, 407, 497, 778, 876, 1176
BseAI TCCGGA 1 cut(s) 999
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 147, 622, 819
BseGI GGATG 5 cut(s) 468, 501, 660, 979, 1292
BseLI CCNNNNNNNGG 1 cut(s) 950
BseMII CTCAG 5 cut(s) 266, 590, 678, 710, 906
BseNI ACTGG 7 cut(s) 118, 376, 407, 497, 778, 876, 1176
BseRI GAGGAG 2 cut(s) 101, 689
BseXI GCAGC 4 cut(s) 274, 737, 820, 1042
BseYI CCCAGC 2 cut(s) 629, 1229
BsgI GTGCAG 2 cut(s) 1049, 1203
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 1127
BshFI GGCC 2 cut(s) 762, 1158
BsiEI CGRYCG 1 cut(s) 1127
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 2 cut(s) 909, 1000
BslI CCNNNNNNNGG 1 cut(s) 950
BsmAI GTCTC 2 cut(s) 595, 841
BsnI GGCC 2 cut(s) 762, 1158
Bsp1286I GDGCHC 2 cut(s) 120, 253
Bsp13I TCCGGA 1 cut(s) 999
Bsp143I GATC 5 cut(s) 18, 338, 963, 1124, 1257
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 2 cut(s) 100, 383
BspANI GGCC 2 cut(s) 762, 1158
BspCNI CTCAG 5 cut(s) 265, 591, 679, 709, 905
BspEI TCCGGA 1 cut(s) 999
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 3 cut(s) 11, 678, 965
BspMAI CTGCAG 1 cut(s) 1120
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 3 cut(s) 958, 971, 1252
BspQI GCTCTTC 1 cut(s) 861
BsrI ACTGG 7 cut(s) 118, 376, 407, 497, 778, 876, 1176
BssECI CCNNGG 3 cut(s) 147, 622, 819
BssMI GATC 5 cut(s) 18, 338, 963, 1124, 1257
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 147, 622
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 5 cut(s) 187, 758, 1027, 1043, 1144
Bst6I CTCTTC 4 cut(s) 618, 839, 861, 1250
BstAPI GCANNNNNTGC 1 cut(s) 905
BstC8I GCNNGC 2 cut(s) 681, 1156
BstDEI CTNAG 5 cut(s) 252, 599, 687, 696, 892
BstF5I GGATG 5 cut(s) 468, 501, 660, 979, 1292
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 5 cut(s) 21, 341, 966, 1127, 1260
BstMAI GTCTC 2 cut(s) 595, 841
BstMBI GATC 5 cut(s) 18, 338, 963, 1124, 1257
BstMCI CGRYCG 1 cut(s) 1127
BstMWI GCNNNNNNNGC 6 cut(s) 626, 905, 926, 1155, 1207, 1226
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 818, 908
BstSFI CTRYAG 3 cut(s) 195, 813, 1116
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 4 cut(s) 274, 737, 820, 1042
BstV2I GAAGAC 2 cut(s) 405, 480
BstX2I RGATCY 1 cut(s) 963
BstYI RGATCY 1 cut(s) 963
BsuI GTATCC 1 cut(s) 1055
BsuRI GGCC 2 cut(s) 762, 1158
BtsCI GGATG 5 cut(s) 468, 501, 660, 979, 1292
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 3 cut(s) 183, 1169, 1215
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 681, 1156
CaiI CAGNNNCTG 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 424, 577
CviAII CATG 7 cut(s) 291, 304, 790, 827, 926, 985, 1150
CviQI GTAC 2 cut(s) 424, 577
DdeI CTNAG 5 cut(s) 252, 599, 687, 696, 892
DpnI GATC 5 cut(s) 20, 340, 965, 1126, 1259
DpnII GATC 5 cut(s) 18, 338, 963, 1124, 1257
DraIII CACNNNGTG 1 cut(s) 1276
Eam1104I CTCTTC 4 cut(s) 618, 839, 861, 1250
EarI CTCTTC 4 cut(s) 618, 839, 861, 1250
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 147, 622
Eco24I GRGCYC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 1179
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 723, 1145
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 818
EcoRV GATATC 1 cut(s) 1179
EcoT14I CCWWGG 2 cut(s) 147, 622
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 147, 622
FaeI CATG 7 cut(s) 294, 307, 793, 830, 929, 988, 1153
FatI CATG 7 cut(s) 290, 303, 789, 826, 925, 984, 1149
Fnu4HI GCNGC 4 cut(s) 288, 726, 834, 1031
FokI GGATG 5 cut(s) 475, 508, 667, 986, 1279
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 288, 726, 834, 1031
FspBI CTAG 1 cut(s) 72
GluI GCNGC 4 cut(s) 288, 726, 834, 1031
GsaI CCCAGC 2 cut(s) 633, 1233
HaeIII GGCC 2 cut(s) 762, 1158
HapII CCGG 2 cut(s) 909, 1000
Hin1II CATG 7 cut(s) 294, 307, 793, 830, 929, 988, 1153
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 2 cut(s) 809, 1240
HpaII CCGG 2 cut(s) 909, 1000
HphI GGTGA 3 cut(s) 319, 722, 1281
Hpy166II GTNNAC 4 cut(s) 183, 235, 771, 1092
Hpy188I TCNGA 4 cut(s) 9, 255, 394, 688
Hpy188III TCNNGA 3 cut(s) 418, 894, 1000
Hpy8I GTNNAC 4 cut(s) 183, 235, 771, 1092
HpyAV CCTTC 4 cut(s) 516, 1169, 1271, 1307
HpyCH4III ACNGT 5 cut(s) 187, 758, 1027, 1043, 1144
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 9 cut(s) 161, 290, 506, 836, 1030, 1052, 1058, 1118, 1220
HpyF10VI GCNNNNNNNGC 6 cut(s) 626, 905, 926, 1155, 1207, 1226
HpyF3I CTNAG 5 cut(s) 252, 599, 687, 696, 892
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 7 cut(s) 294, 307, 793, 830, 929, 988, 1153
Kpn2I TCCGGA 1 cut(s) 999
Kzo9I GATC 5 cut(s) 18, 338, 963, 1124, 1257
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 4 cut(s) 9, 137, 676, 896
Lsp1109I GCAGC 4 cut(s) 274, 737, 820, 1042
LweI GCATC 5 cut(s) 77, 170, 210, 692, 907
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 1165
MalI GATC 5 cut(s) 20, 340, 965, 1126, 1259
MboI GATC 5 cut(s) 18, 338, 963, 1124, 1257
MboII GAAGA 9 cut(s) 46, 49, 410, 485, 557, 605, 848, 856, 1237
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 120, 253
MluCI AATT 5 cut(s) 257, 365, 482, 642, 1071
MlyI GAGTC 1 cut(s) 1234
Mph1103I ATGCAT 1 cut(s) 163
MroI TCCGGA 1 cut(s) 999
MseI TTAA 2 cut(s) 660, 1302
MslI CAYNNNNRTG 1 cut(s) 1253
MspI CCGG 2 cut(s) 909, 1000
MspR9I CCNGG 2 cut(s) 820, 910
MunI CAATTG 1 cut(s) 1071
MvaI CCWGG 1 cut(s) 820
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 6 cut(s) 626, 905, 926, 1155, 1207, 1226
NciI CCSGG 1 cut(s) 910
NdeII GATC 5 cut(s) 18, 338, 963, 1124, 1257
NlaIII CATG 7 cut(s) 294, 307, 793, 830, 929, 988, 1153
NlaIV GGNNCC 3 cut(s) 11, 678, 965
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 1165
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 929
PaqCI CACCTGC 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 4 cut(s) 289, 727, 835, 1032
Ple19I CGATCG 1 cut(s) 1127
PleI GAGTC 1 cut(s) 1234
PpsI GAGTC 1 cut(s) 1234
PpuMI RGGWCCY 1 cut(s) 242
PsiI TTATAA 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 818
PspFI CCCAGC 2 cut(s) 629, 1229
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 3 cut(s) 11, 678, 965
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PsrI GAACNNNNNNTAC 2 cut(s) 807, 839
PstI CTGCAG 1 cut(s) 1120
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 963
PvuI CGATCG 1 cut(s) 1127
RsaI GTAC 2 cut(s) 425, 578
RsaNI GTAC 2 cut(s) 424, 577
RseI CAYNNNNRTG 1 cut(s) 1253
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 660, 1302
SatI GCNGC 4 cut(s) 288, 726, 834, 1031
Sau3AI GATC 5 cut(s) 18, 338, 963, 1124, 1257
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 1234
ScrFI CCNGG 2 cut(s) 820, 910
SduI GDGCHC 2 cut(s) 120, 253
SfaNI GCATC 5 cut(s) 77, 170, 210, 692, 907
SfcI CTRYAG 3 cut(s) 195, 813, 1116
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 1253
SmlI CTYRAG 1 cut(s) 1314
SmoI CTYRAG 1 cut(s) 1314
Sse9I AATT 5 cut(s) 257, 365, 482, 642, 1071
SsiI CCGC 2 cut(s) 100, 383
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 818, 908
StyI CCWWGG 2 cut(s) 147, 622
TaaI ACNGT 5 cut(s) 187, 758, 1027, 1043, 1144
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 417, 1123
TasI AATT 5 cut(s) 257, 365, 482, 642, 1071
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 2 cut(s) 660, 1302
Tru9I TTAA 2 cut(s) 660, 1302
TscAI CASTG 3 cut(s) 190, 1176, 1222
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 4 cut(s) 287, 725, 833, 1030
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 3 cut(s) 411, 815, 1001
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 3 cut(s) 190, 1176, 1222
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 365, 482
XceI RCATGY 1 cut(s) 929
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.