Prupe.8G086500_v2.0.a1

Cytochrome c oxidase assembly protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
11943426 .. 11946984
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G086500.1

Sequence Viewer

Length: 1350 bp
ATGTTTCGGAGCCGAGTTGTAGCGTTGTTTGTGAAGAACAACAGCAAAGCTCTGTACAATCTCAGGGGAACGACGCCGTCTAGGGTTCTGAACGAGGAATCTTATCGATTTTTCTCTATTGGAGCCACACGCAAATGCTTGGATGGCTTTCGATCTTTCTCTAAGGGTAACTATGTACCATCTATAAGGAATATGTCCACTGTTGCTTCTGTAGGCATCGGAAATAAGGAGGGATTGAAGCTTCTTGTAAATGGAGGACCTCGTGCTCAGAAAATGGTTGGCATTTGGCTTTTTGGCTCTGCTGCATGGGTGTTTAGTATGGTGATACTTGGCGGGATTACACGACTAACGCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCTCCTCTCTCAGATGAGGATTGGTTGCTTGAGTTTGAGAAGTACAAGCAGTCCCCTGAGTATAAGCGTGTAAATCGAGGGATGAGTATTGAAGATTTCAAATTCATCTATTGGATGGAATATGCACATCGAATGTGGGGAAGGGCACTGGGAATTATGTTTGCGTTGCCCTTCTCATATTTTCTCCGTAAGGGGTATATTACCGTACAGCTTGGACTGAGACTGTCTGCTCTTTTTGGTCTTGGTGCTGGGCAGGGTTTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAATATTCTCAGCCAAGAGTAAGCCCTTACCGTCTTGCAGCTCATCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTATGGACAGGTCTTTCTGTTGTCATGCCTGAACCACCTTCTGAATCACTAGCTTGGGTTCGTGGAGCAGCAAAGGTGAAGCGACTTGCTCTTCCTGTAAGCTTACTTGTCGGAGTAACTGCTGTCTCAGGAGCATTCGTTGCCGGGAATGATGCTGGGCATGCTTATAATACTTTTCCAAAGATGGGGGATACGTGGATCCCGGAGGATGTTTTTGACATGAAGCCACTAATCCGGAACTTCTTTGAGAATACATCTACTGTGCAGCTTGATCATCGTATCCTTGCAACTGCAACTTTATTTTCAATTGGTGCTTTGTGGTGGTCAACAAGGAAGTTTGACATACATCCTGCAGTTCGGTCTTTGATTGGAAGTGCTGTAGGCATGGCTGGCCTTCAGGTCACGCTGGGAATATCTACACTGCTGTCATATGTGCCTGTAGAGCTTGGTACAGCACATCAAGCTGGGGCTTTGACTCTCCTGACACTGATGATCCTTCTCAATCACACTTTGCGTAGGCCATCATCGTCTCTCCTTAAATCTCTACCTCAAGTTGCAAAGACAATCTAG

Protein Analysis

450

Amino Acids

49.61

Weight (kDa)

9.97

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AccII CGCG 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 1014
AciI CCGC 1 cut(s) 333
AclWI GGATC 3 cut(s) 973, 986, 1267
AcsI RAATTY 2 cut(s) 380, 497
AcuI CTGAAG 2 cut(s) 738, 1160
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 5 cut(s) 56, 177, 440, 603, 1231
AfiI CCNNNNNNNGG 1 cut(s) 965
AgsI TTSAA 5 cut(s) 238, 366, 488, 496, 1086
AluBI AGCT 9 cut(s) 50, 241, 607, 743, 833, 882, 1048, 1225, 1244
AluI AGCT 9 cut(s) 50, 241, 607, 743, 833, 882, 1048, 1225, 1244
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 610, 910, 1314
AlwI GGATC 3 cut(s) 973, 986, 1267
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 1014
AoxI GGCC 3 cut(s) 775, 1171, 1298
ApeKI GCWGC 4 cut(s) 302, 740, 848, 1045
ApoI RAATTY 2 cut(s) 380, 497
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 2 cut(s) 925, 983
AsuHPI GGTGA 2 cut(s) 334, 868
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 978
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 4 cut(s) 289, 752, 860, 1057
BccI CCATC 6 cut(s) 137, 187, 505, 664, 958, 1309
BceAI ACGGC 1 cut(s) 61
BciVI GTATCC 2 cut(s) 964, 1070
BclI TGATCA 1 cut(s) 1051
BcnI CCSGG 2 cut(s) 925, 983
BcoDI GTCTC 3 cut(s) 610, 910, 1314
BfaI CTAG 3 cut(s) 81, 830, 1348
BfmI CTRYAG 4 cut(s) 210, 1131, 1158, 1218
BfuI GTATCC 2 cut(s) 964, 1070
BisI GCNGC 4 cut(s) 303, 741, 849, 1046
BlsI GCNGC 4 cut(s) 304, 742, 850, 1047
Bme1390I CCNGG 2 cut(s) 925, 983
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 4 cut(s) 11, 124, 693, 980
BmrFI CCNGG 2 cut(s) 925, 983
BmrI ACTGGG 2 cut(s) 396, 554
BmsI GCATC 3 cut(s) 225, 707, 922
BmuI ACTGGG 2 cut(s) 396, 554
BpuEI CTTGAG 2 cut(s) 446, 1314
BpuMI CCSGG 2 cut(s) 925, 983
Bsa29I ATCGAT 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 1014
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 1 cut(s) 965
Bse1I ACTGG 2 cut(s) 391, 549
BseAI TCCGGA 1 cut(s) 1014
BseCI ATCGAT 1 cut(s) 106
BseGI GGATG 6 cut(s) 148, 483, 516, 675, 994, 1126
BseLI CCNNNNNNNGG 1 cut(s) 965
BseMII CTCAG 7 cut(s) 76, 281, 420, 444, 605, 725, 921
BseNI ACTGG 2 cut(s) 391, 549
BseRI GAGGAG 2 cut(s) 390, 704
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 4 cut(s) 289, 752, 860, 1057
BseYI CCCAGC 4 cut(s) 644, 935, 1186, 1244
BsgI GTGCAG 1 cut(s) 1064
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 3 cut(s) 777, 1173, 1300
BshVI ATCGAT 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 924, 983, 1015
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 965
BsmAI GTCTC 3 cut(s) 610, 910, 1314
BsmBI CGTCTC 1 cut(s) 1314
BsmFI GGGAC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 914
BsnI GGCC 3 cut(s) 777, 1173, 1300
Bsp1286I GDGCHC 2 cut(s) 268, 544
Bsp13I TCCGGA 1 cut(s) 1014
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 5 cut(s) 152, 353, 978, 1051, 1272
BspACI CCGC 1 cut(s) 333
BspANI GGCC 3 cut(s) 777, 1173, 1300
BspCNI CTCAG 7 cut(s) 75, 280, 419, 445, 606, 724, 920
BspDI ATCGAT 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 4 cut(s) 11, 124, 693, 980
BspMAI CTGCAG 1 cut(s) 1135
BspPI GGATC 3 cut(s) 973, 986, 1267
BspQI GCTCTTC 1 cut(s) 876
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 391, 549
BssMI GATC 5 cut(s) 152, 353, 978, 1051, 1272
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 6 cut(s) 202, 601, 621, 734, 773, 1042
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 920
BstAUI TGTACA 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 975
BstC8I GCNNGC 3 cut(s) 696, 942, 1171
BstDEI CTNAG 8 cut(s) 62, 162, 267, 406, 453, 614, 711, 907
BstF5I GGATG 6 cut(s) 148, 483, 516, 675, 994, 1126
BstFNI CGCG 1 cut(s) 352
BstKTI GATC 5 cut(s) 155, 356, 981, 1054, 1275
BstMAI GTCTC 3 cut(s) 610, 910, 1314
BstMBI GATC 5 cut(s) 152, 353, 978, 1051, 1272
BstMWI GCNNNNNNNGC 6 cut(s) 144, 920, 941, 1170, 1222, 1241
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 2 cut(s) 923, 981
BstSFI CTRYAG 4 cut(s) 210, 1131, 1158, 1218
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 4 cut(s) 289, 752, 860, 1057
BstX2I RGATCY 1 cut(s) 978
BstYI RGATCY 1 cut(s) 978
Bsu15I ATCGAT 1 cut(s) 106
BsuI GTATCC 2 cut(s) 964, 1070
BsuRI GGCC 3 cut(s) 777, 1173, 1300
BsuTUI ATCGAT 1 cut(s) 106
BtsCI GGATG 6 cut(s) 148, 483, 516, 675, 994, 1126
BtsI GCAGTG 1 cut(s) 1199
BtsIMutI CAGTG 4 cut(s) 198, 542, 1199, 1265
Cac8I GCNNGC 3 cut(s) 696, 942, 1171
CaiI CAGNNNCTG 1 cut(s) 701
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 106
CseI GACGC 1 cut(s) 82
Csp6I GTAC 5 cut(s) 55, 176, 439, 602, 1230
CviAII CATG 5 cut(s) 306, 805, 941, 1000, 1165
CviQI GTAC 5 cut(s) 55, 176, 439, 602, 1230
DdeI CTNAG 8 cut(s) 62, 162, 267, 406, 453, 614, 711, 907
DpnI GATC 5 cut(s) 154, 355, 980, 1053, 1274
DpnII GATC 5 cut(s) 152, 353, 978, 1051, 1272
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 738, 1160
EcoO109I RGGNCCY 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 1314
FaeI CATG 5 cut(s) 309, 808, 944, 1003, 1168
FaqI GGGAC 1 cut(s) 433
FatI CATG 5 cut(s) 305, 804, 940, 999, 1164
FauI CCCGC 1 cut(s) 326
FauNDI CATATG 1 cut(s) 1210
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 4 cut(s) 303, 741, 849, 1046
FokI GGATG 6 cut(s) 155, 490, 523, 682, 1001, 1113
Fsp4HI GCNGC 4 cut(s) 303, 741, 849, 1046
FspBI CTAG 3 cut(s) 81, 830, 1348
GluI GCNGC 4 cut(s) 303, 741, 849, 1046
GsaI CCCAGC 4 cut(s) 648, 939, 1190, 1248
HaeIII GGCC 3 cut(s) 777, 1173, 1300
HapII CCGG 3 cut(s) 924, 983, 1015
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 5 cut(s) 309, 808, 944, 1003, 1168
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 2 cut(s) 239, 880
HinfI GANTC 3 cut(s) 98, 824, 1255
HpaII CCGG 3 cut(s) 924, 983, 1015
HphI GGTGA 2 cut(s) 334, 868
Hpy166II GTNNAC 2 cut(s) 198, 1107
Hpy188I TCNGA 8 cut(s) 9, 90, 221, 270, 409, 703, 823, 893
Hpy188III TCNNGA 3 cut(s) 909, 1015, 1261
Hpy8I GTNNAC 2 cut(s) 198, 1107
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 531, 577, 828, 1184, 1286
HpyCH4III ACNGT 6 cut(s) 202, 601, 621, 734, 773, 1042
HpyCH4IV ACGT 1 cut(s) 974
HpyCH4V TGCA 8 cut(s) 305, 521, 740, 1045, 1067, 1073, 1133, 1337
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 920, 941, 1170, 1222, 1241
HpyF3I CTNAG 8 cut(s) 62, 162, 267, 406, 453, 614, 711, 907
HpySE526I ACGT 1 cut(s) 974
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 5 cut(s) 309, 808, 944, 1003, 1168
Kpn2I TCCGGA 1 cut(s) 1014
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 5 cut(s) 152, 353, 978, 1051, 1272
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 5 cut(s) 9, 122, 691, 845, 911
Lsp1109I GCAGC 4 cut(s) 289, 752, 860, 1057
LweI GCATC 3 cut(s) 225, 707, 922
MaeI CTAG 3 cut(s) 81, 830, 1348
MaeII ACGT 1 cut(s) 974
MaeIII GTNAC 3 cut(s) 167, 895, 1180
MalI GATC 5 cut(s) 154, 355, 980, 1053, 1274
MboI GATC 5 cut(s) 152, 353, 978, 1051, 1272
MboII GAAGA 3 cut(s) 46, 500, 863
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 1 cut(s) 978
MhlI GDGCHC 2 cut(s) 268, 544
MluCI AATT 5 cut(s) 380, 497, 549, 657, 1086
MlyI GAGTC 1 cut(s) 1249
MmeI TCCRAC 1 cut(s) 871
MroI TCCGGA 1 cut(s) 1014
MseI TTAA 3 cut(s) 656, 675, 1317
MslI CAYNNNNRTG 1 cut(s) 133
MspI CCGG 3 cut(s) 924, 983, 1015
MspR9I CCNGG 2 cut(s) 925, 983
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 1 cut(s) 914
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 6 cut(s) 144, 920, 941, 1170, 1222, 1241
NciI CCSGG 2 cut(s) 925, 983
NdeI CATATG 1 cut(s) 1210
NdeII GATC 5 cut(s) 152, 353, 978, 1051, 1272
NlaIII CATG 5 cut(s) 309, 808, 944, 1003, 1168
NlaIV GGNNCC 4 cut(s) 11, 124, 693, 980
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 1180
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PctI GAATGC 1 cut(s) 914
PfeI GAWTC 2 cut(s) 98, 824
PflFI GACNNNGTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 981
PkrI GCNGC 4 cut(s) 304, 742, 850, 1047
PleI GAGTC 1 cut(s) 1249
PpsI GAGTC 1 cut(s) 1249
Ppu21I YACGTR 1 cut(s) 975
PpuMI RGGWCCY 1 cut(s) 257
PsiI TTATAA 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 257
PspFI CCCAGC 4 cut(s) 644, 935, 1186, 1244
PspN4I GGNNCC 4 cut(s) 11, 124, 693, 980
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 978
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 5 cut(s) 56, 177, 440, 603, 1231
RsaNI GTAC 5 cut(s) 55, 176, 439, 602, 1230
RseI CAYNNNNRTG 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 3 cut(s) 656, 675, 1317
SatI GCNGC 4 cut(s) 303, 741, 849, 1046
Sau3AI GATC 5 cut(s) 152, 353, 978, 1051, 1272
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 1249
ScrFI CCNGG 2 cut(s) 925, 983
SduI GDGCHC 2 cut(s) 268, 544
SfaNI GCATC 3 cut(s) 225, 707, 922
SfcI CTRYAG 4 cut(s) 210, 1131, 1158, 1218
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 425, 1329
SmoI CTYRAG 2 cut(s) 425, 1329
SphI GCATGC 1 cut(s) 944
Sse9I AATT 5 cut(s) 380, 497, 549, 657, 1086
SsiI CCGC 1 cut(s) 333
SspI AATATT 1 cut(s) 707
SspMI CTAG 3 cut(s) 81, 830, 1348
StyD4I CCNGG 2 cut(s) 923, 981
TaaI ACNGT 6 cut(s) 202, 601, 621, 734, 773, 1042
TaiI ACGT 1 cut(s) 977
TaqI TCGA 4 cut(s) 106, 151, 472, 526
TaqII GACCGA 1 cut(s) 1128
TasI AATT 5 cut(s) 380, 497, 549, 657, 1086
TatI WGTACW 2 cut(s) 54, 438
TfiI GAWTC 2 cut(s) 98, 824
Tru1I TTAA 3 cut(s) 656, 675, 1317
Tru9I TTAA 3 cut(s) 656, 675, 1317
TscAI CASTG 4 cut(s) 205, 549, 1206, 1272
TseFI GTSAC 1 cut(s) 1180
TseI GCWGC 4 cut(s) 302, 740, 848, 1045
Tsp45I GTSAC 1 cut(s) 1180
TspDTI ATGAA 2 cut(s) 490, 1016
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 4 cut(s) 205, 549, 1206, 1272
Tth111I GACNNNGTC 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 380, 497
XceI RCATGY 1 cut(s) 944
XspI CTAG 3 cut(s) 81, 830, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.