Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001655

Physical Location & Seq

Genomic Coordinates Reverse (-)

9037765 .. 9043469

Gene Structure 5705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10180.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTTCCGGAGGCGAGCGGTGGCGTTATTGGTCAAGAACAATAGCAAGGCTCTCTACAACGTTAGGGTTTCGAACGAGGCCGCTACCCACAGGCTATTCTCTACGAAATGCTTTCATACCTTCCCATCTTTCCCCAAGGGTAACTATGTACCATCTATAAGGAATATGTCCACTGTGGCTTCAGTAGGCATCAAAGATAAGGAGGCATTGAAGTTTCCTGTGAATGGAGGACCTCGTGCTCAGAAAATGATTGGCATTTGGCTCTTCGGCTCTGCTGCATGGGTGTTTAGCATGGTCATACTTGGAGGTGCTACGCGGCTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGTGGGCTTCCACCTCTCTCGGATGAAGACTGGTTGGTTGAGTTTGACAAGTACAAGCAATCCCCTGAATATAAGCGTGTAAATAGAGGGATGAGTATTGAAGATTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGTTTTGCCATTCTCATATTTTCTTCATAAGAGGTATATTACCTTACAACTTGGACTCAGGCTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAAGGTCTAATTGGTTGGTGGATGGTTAAAAGCGGTTTGGAGGAGCCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTATCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTATGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCGGCTGAATCTGTAGCCTGGGTTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGTTTACTGGTTGGAATTACTGCTATCTCAGGAGCATTTGTGGCCGGGAATGATGCTGGAGATGCTTATAATACCTTTCCCAGGATGGGGGACAGATGGATCCCGGAGGATGTTTTTGACATGAAGCCACTAATCCGGAACTTCTTTGAGAATACATCTGCTGTGCAGGCTGACCATCGCATCCTTGCAACTGCAACTTTAATTTCAATTGTTGCTTTGTGGTGGTCAAAAAGGAAGTTAGACATACACCCTGCAGTTCAATCGTTGATTGGAACTACTGTAGGCATGGCTGGCCTTCAGGTAGTTGACGACTCCAACATTTTGGTCTACCTAGTATCATTACGGACATTACCTCAACCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

406

Amino Acids

45.14

Weight (kDa)

9.77

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX15-CtaA	PF02628	58 - 358	1.8e-99	Cytochrome oxidase assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56090
fragaria_vesca	FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_3g41910
malus_domestica	MD02G1271400.v1.1 MD07G1040600.v1.1
prunus_persica	Prupe.4G230100_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1
pyrus_communis	pycom02g23200
rosa_chinensis	RchiOBHm_Chr5g0075121 RchiOBHm_Chr6g0267391
rosa_laevigata	RLG00000014008 RLG00000014012 RLG00000036531
rosa_multiflora	Rmu_sc0000746.1_g000001 Rmu_ssc0000217.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006500 Rroxscaffold_7G00200820
rosa_rugosa	Rorug05G0436400 Rorug05G0436500 Rorug06G0032200 Rorug06G0032300 Rorug06G0032300
rosa_samantha	Rh5AG493700 Rh5BG515200 Rh5CG539000 Rh5DG527700 Rh6AG153700 Rh6CG149400 Rh6DG137800
rosa_wichuraiana	Rw5G045800 Rw6G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	1179
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	2 cut(s)	6, 987
AciI	CCGC	4 cut(s)	17, 81, 316, 654
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	2 cut(s)	946, 959
AcoI	YGGCCR	1 cut(s)	894
AcsI	RAATTY	2 cut(s)	353, 470
AcuI	CTGAAG	3 cut(s)	165, 711, 1133
AfaI	GTAC	2 cut(s)	150, 413
AfiI	CCNNNNNNNGG	4 cut(s)	224, 933, 938, 939
AgsI	TTSAA	6 cut(s)	211, 339, 461, 469, 1059, 1112
AjnI	CCWGG	2 cut(s)	806, 932
AluBI	AGCT	1 cut(s)	716
AluI	AGCT	1 cut(s)	716
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	2 cut(s)	946, 959
AlwNI	CAGNNNCTG	1 cut(s)	674
Aor13HI	TCCGGA	2 cut(s)	6, 987
AoxI	GGCC	4 cut(s)	78, 748, 894, 1144
ApeKI	GCWGC	3 cut(s)	275, 713, 821
ApoI	RAATTY	2 cut(s)	353, 470
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	2 cut(s)	898, 956
AsuHPI	GGTGA	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	951
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	262, 725, 808
BccI	CCATC	7 cut(s)	133, 160, 478, 637, 931, 942, 1035
BcgI	CGANNNNNNTGC	2 cut(s)	1095, 1129
BciT130I	CCWGG	2 cut(s)	808, 934
BcnI	CCSGG	2 cut(s)	898, 956
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	1 cut(s)	1184
BfmI	CTRYAG	3 cut(s)	801, 1104, 1131
BisI	GCNGC	5 cut(s)	81, 276, 317, 714, 822
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	5 cut(s)	82, 277, 318, 715, 823
Bme1390I	CCNGG	4 cut(s)	808, 898, 934, 956
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	666, 953
BmrFI	CCNGG	4 cut(s)	808, 898, 934, 956
BmsI	GCATC	5 cut(s)	198, 680, 895, 904, 1041
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	826, 858
BpmI	CTGGAG	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	898, 956
Bsa29I	ATCGAT	1 cut(s)	706
BsaJI	CCNNGG	4 cut(s)	135, 610, 807, 932
BsaWI	WCCGGW	2 cut(s)	6, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 933, 938, 939
Bse118I	RCCGGY	1 cut(s)	790
Bse1I	ACTGG	5 cut(s)	364, 395, 485, 766, 864
BseAI	TCCGGA	2 cut(s)	6, 987
BseBI	CCWGG	2 cut(s)	808, 934
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	4 cut(s)	135, 610, 807, 932
BseGI	GGATG	7 cut(s)	388, 456, 489, 648, 942, 967, 1032
BseLI	CCNNNNNNNGG	4 cut(s)	224, 933, 938, 939
BseMII	CTCAG	5 cut(s)	254, 601, 666, 698, 894
BseNI	ACTGG	5 cut(s)	364, 395, 485, 766, 864
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	3 cut(s)	262, 725, 808
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	1037
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	80, 750, 896, 1146
BshVI	ATCGAT	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	5 cut(s)	7, 791, 897, 956, 988
BslFI	GGGAC	1 cut(s)	956
BslI	CCNNNNNNNGG	4 cut(s)	224, 933, 938, 939
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	956
BsnI	GGCC	4 cut(s)	80, 750, 896, 1146
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	2 cut(s)	6, 987
Bsp143I	GATC	2 cut(s)	326, 951
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	4 cut(s)	17, 81, 316, 654
BspANI	GGCC	4 cut(s)	80, 750, 896, 1146
BspCNI	CTCAG	5 cut(s)	253, 600, 667, 697, 893
BspDI	ATCGAT	1 cut(s)	706
BspEI	TCCGGA	2 cut(s)	6, 987
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	666, 953
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	946, 959
BspQI	GCTCTTC	2 cut(s)	269, 849
BspT104I	TTCGAA	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	790
BsrI	ACTGG	5 cut(s)	364, 395, 485, 766, 864
BssAI	RCCGGY	1 cut(s)	790
BssECI	CCNNGG	4 cut(s)	135, 610, 807, 932
BssMI	GATC	2 cut(s)	326, 951
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	135, 610
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	808, 934
Bst4CI	ACNGT	3 cut(s)	175, 746, 1132
Bst6I	CTCTTC	4 cut(s)	269, 606, 827, 849
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	15, 669, 1020, 1144
BstDEI	CTNAG	5 cut(s)	240, 587, 675, 684, 880
BstENI	CCTNNNNNAGG	1 cut(s)	931
BstF5I	GGATG	7 cut(s)	388, 456, 489, 648, 942, 967, 1032
BstFNI	CGCG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	329, 954
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	326, 951
BstMWI	GCNNNNNNNGC	5 cut(s)	614, 893, 914, 1019, 1143
BstNI	CCWGG	2 cut(s)	808, 934
BstSCI	CCNGG	4 cut(s)	806, 896, 932, 954
BstSFI	CTRYAG	3 cut(s)	801, 1104, 1131
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	262, 725, 808
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	951
BstXI	CCANNNNNNTGG	1 cut(s)	1174
BstYI	RGATCY	1 cut(s)	951
Bsu15I	ATCGAT	1 cut(s)	706
BsuRI	GGCC	4 cut(s)	80, 750, 896, 1146
BsuTUI	ATCGAT	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	1013
BtsCI	GGATG	7 cut(s)	388, 456, 489, 648, 942, 967, 1032
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	4 cut(s)	15, 669, 1020, 1144
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr10I	RCCGGY	1 cut(s)	790
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	149, 412
CviAII	CATG	6 cut(s)	279, 292, 778, 815, 973, 1138
CviQI	GTAC	2 cut(s)	149, 412
DdeI	CTNAG	5 cut(s)	240, 587, 675, 684, 880
DpnI	GATC	2 cut(s)	328, 953
DpnII	GATC	2 cut(s)	326, 951
EaeI	YGGCCR	1 cut(s)	894
Eam1104I	CTCTTC	4 cut(s)	269, 606, 827, 849
EarI	CTCTTC	4 cut(s)	269, 606, 827, 849
Eco130I	CCWWGG	2 cut(s)	135, 610
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	165, 711, 1133
EcoNI	CCTNNNNNAGG	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	806, 932
EcoT14I	CCWWGG	2 cut(s)	135, 610
ErhI	CCWWGG	2 cut(s)	135, 610
FaeI	CATG	6 cut(s)	282, 295, 781, 818, 976, 1141
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	6 cut(s)	278, 291, 777, 814, 972, 1137
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	5 cut(s)	81, 276, 317, 714, 822
FokI	GGATG	7 cut(s)	395, 463, 496, 655, 949, 974, 1019
Fsp4HI	GCNGC	5 cut(s)	81, 276, 317, 714, 822
FspBI	CTAG	1 cut(s)	1184
GluI	GCNGC	5 cut(s)	81, 276, 317, 714, 822
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	4 cut(s)	80, 750, 896, 1146
HapII	CCGG	5 cut(s)	7, 791, 897, 956, 988
Hin1II	CATG	6 cut(s)	282, 295, 781, 818, 976, 1141
HincII	GTYRAC	1 cut(s)	1159
HindII	GTYRAC	1 cut(s)	1159
HinfI	GANTC	3 cut(s)	585, 797, 1163
HpaII	CCGG	5 cut(s)	7, 791, 897, 956, 988
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	4 cut(s)	171, 857, 1159, 1180
Hpy188I	TCNGA	3 cut(s)	243, 382, 676
Hpy188III	TCNNGA	4 cut(s)	7, 34, 882, 988
Hpy8I	GTNNAC	4 cut(s)	171, 857, 1159, 1180
HpyAV	CCTTC	3 cut(s)	130, 504, 1157
HpyCH4III	ACNGT	3 cut(s)	175, 746, 1132
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	7 cut(s)	278, 494, 824, 1018, 1040, 1046, 1106
HpyF10VI	GCNNNNNNNGC	5 cut(s)	614, 893, 914, 1019, 1143
HpyF3I	CTNAG	5 cut(s)	240, 587, 675, 684, 880
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	282, 295, 781, 818, 976, 1141
Kpn2I	TCCGGA	2 cut(s)	6, 987
Kzo9I	GATC	2 cut(s)	326, 951
LguI	GCTCTTC	2 cut(s)	269, 849
LmnI	GCTCC	2 cut(s)	664, 884
Lsp1109I	GCAGC	3 cut(s)	262, 725, 808
LweI	GCATC	5 cut(s)	198, 680, 895, 904, 1041
MaeI	CTAG	1 cut(s)	1184
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	328, 953
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	2 cut(s)	326, 951
MboII	GAAGA	7 cut(s)	256, 398, 473, 545, 593, 836, 844
MfeI	CAATTG	1 cut(s)	1059
MflI	RGATCY	1 cut(s)	951
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	353, 470, 630, 867, 1053, 1059
MlyI	GAGTC	2 cut(s)	579, 1157
MmeI	TCCRAC	2 cut(s)	844, 1191
MroI	TCCGGA	2 cut(s)	6, 987
MseI	TTAA	2 cut(s)	648, 1052
MspI	CCGG	5 cut(s)	7, 791, 897, 956, 988
MspR9I	CCNGG	4 cut(s)	808, 898, 934, 956
MunI	CAATTG	1 cut(s)	1059
MvaI	CCWGG	2 cut(s)	808, 934
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	5 cut(s)	614, 893, 914, 1019, 1143
NciI	CCSGG	2 cut(s)	898, 956
NdeII	GATC	2 cut(s)	326, 951
NlaIII	CATG	6 cut(s)	282, 295, 781, 818, 976, 1141
NlaIV	GGNNCC	2 cut(s)	666, 953
NspV	TTCGAA	1 cut(s)	71
PciSI	GCTCTTC	2 cut(s)	269, 849
PfeI	GAWTC	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	954
PkrI	GCNGC	5 cut(s)	82, 277, 318, 715, 823
PleI	GAGTC	2 cut(s)	579, 1157
PpsI	GAGTC	2 cut(s)	579, 1157
PpuMI	RGGWCCY	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	921
Psp1406I	AACGTT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	806, 932
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	806, 932
PspN4I	GGNNCC	2 cut(s)	666, 953
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	795, 827
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	951
RsaI	GTAC	2 cut(s)	150, 413
RsaNI	GTAC	2 cut(s)	149, 412
SapI	GCTCTTC	2 cut(s)	269, 849
SaqAI	TTAA	2 cut(s)	648, 1052
SatI	GCNGC	5 cut(s)	81, 276, 317, 714, 822
Sau3AI	GATC	2 cut(s)	326, 951
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	579, 1157
ScrFI	CCNGG	4 cut(s)	808, 898, 934, 956
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	5 cut(s)	198, 680, 895, 904, 1041
SfcI	CTRYAG	3 cut(s)	801, 1104, 1131
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	6 cut(s)	353, 470, 630, 867, 1053, 1059
SsiI	CCGC	4 cut(s)	17, 81, 316, 654
SspMI	CTAG	1 cut(s)	1184
StyD4I	CCNGG	4 cut(s)	806, 896, 932, 954
StyI	CCWWGG	2 cut(s)	135, 610
TaaI	ACNGT	3 cut(s)	175, 746, 1132
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	71, 706
TasI	AATT	6 cut(s)	353, 470, 630, 867, 1053, 1059
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	83, 319
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	2 cut(s)	648, 1052
Tru9I	TTAA	2 cut(s)	648, 1052
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	275, 713, 821
TspDTI	ATGAA	5 cut(s)	104, 399, 545, 803, 989
TspGWI	ACGGA	1 cut(s)	1210
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	931
XapI	RAATTY	2 cut(s)	353, 470
XmiI	GTMKAC	1 cut(s)	1179
XspI	CTAG	1 cut(s)	1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.