RLG00000014012

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001655
Physical Location & Seq
Forward (+)
45603653 .. 45606891
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014012

Sequence Viewer

Length: 1341 bp
ATGTTTCGGAGCCGAGTGACCGCGTTGTTTGTGAAGAACAATAGCAAGGCCCTCTACAATGTGAGGGCATCTAGGGTTTCCAGTGAGGCTACCTACCGCCTATTCTCTACTGGGCTCACAAGGAAATGCTTGCAAAGCTTCCCATCTTTCTCCAAGGGTAGCTATGTATCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATCAAAGATAAGGAGGGATTGAAGCTTCTTGTAAACGGAGGACCTCGTGCTCAGAAATTGATTGGCATTTGGCTTTTCGGCTCTGCTGCATTGGTGTTTAGCATGGTGATACTTGGAGGTGCTACACGACTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCGCCTCTCTCTGATGAAGACTGGTTGATTGAGTTCGAGAAGTACAAGCAATCCCCTGAATATAAGCGTGTAAATAAAGGGATGAGTATTGAAGACTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGCTTTGCCATTCTCATATTTTCTTCGTAAGGGGTATATTACCTTACAACTTGGACTGAGACTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAGGGTCTAATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTGTGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCTGCTGAATCTGTAGCCTGGGCTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGCTTACTGGTTGGGATTACTGCTATCTCAGGAGCATTTGTTGCTGGGAATGATGCTGGACATGCTTATAATACTTTTCCCAAGATGGGGGACAGATGGATCCCAGAGGATGTTTTTGACATGAAGCCACTAGTCCGGAACTTCTTTGAGAATACATCTACTGTTCAGCTTGACCATCGTATCCTTGCAACTGCAACTTTATTTTCAATTGTCGCTTTGTGGTGGTCAACAAGGAAGTTTGACATACACCCTGCAGTTCGATCGTTGATTGGAACTACTGTTGGCATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCGTATGTGCCTGTTGAGCTTGGCACCGCACATCAAGCTGGGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Protein Analysis

447

Amino Acids

49.19

Weight (kDa)

9.95

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 92 - 422 4.4e-113 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AarI CACCTGC 1 cut(s) 817
Acc36I ACCTGC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 1220
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 1005
AciI CCGC 4 cut(s) 21, 97, 389, 1224
AclWI GGATC 3 cut(s) 964, 977, 1258
AcsI RAATTY 2 cut(s) 371, 488
AcuI CTGAAG 2 cut(s) 729, 1151
AdeI CACNNNGTG 1 cut(s) 1282
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 956, 957
AgsI TTSAA 5 cut(s) 229, 357, 479, 487, 1077
AhlI ACTAGT 1 cut(s) 1000
AjnI CCWGG 1 cut(s) 824
AluBI AGCT 8 cut(s) 138, 162, 232, 734, 873, 1039, 1216, 1235
AluI AGCT 8 cut(s) 138, 162, 232, 734, 873, 1039, 1216, 1235
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 601, 847
AlwI GGATC 3 cut(s) 964, 977, 1258
AlwNI CAGNNNCTG 1 cut(s) 692
Aor13HI TCCGGA 1 cut(s) 1005
AoxI GGCC 3 cut(s) 48, 766, 1162
ApeKI GCWGC 3 cut(s) 293, 731, 839
ApoI RAATTY 2 cut(s) 371, 488
AspS9I GGNCC 2 cut(s) 49, 248
AsuHPI GGTGA 3 cut(s) 325, 728, 1287
AvaII GGWCC 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 1033, 1066
BamHI GGATCC 1 cut(s) 969
BanI GGYRCC 1 cut(s) 1220
BanII GRGCYC 2 cut(s) 117, 832
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 2 cut(s) 411, 486
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 280, 743, 826
BccI CCATC 8 cut(s) 151, 496, 655, 949, 960, 1053, 1300, 1306
BcgI CGANNNNNNTGC 2 cut(s) 1113, 1147
BciT130I CCWGG 1 cut(s) 826
BciVI GTATCC 1 cut(s) 1061
BcoDI GTCTC 2 cut(s) 601, 847
BcuI ACTAGT 1 cut(s) 1000
BfaI CTAG 2 cut(s) 72, 1001
BfmI CTRYAG 3 cut(s) 201, 819, 1122
BfuAI ACCTGC 1 cut(s) 817
BfuI GTATCC 1 cut(s) 1061
BisI GCNGC 3 cut(s) 294, 732, 840
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 3 cut(s) 295, 733, 841
Bme1390I CCNGG 1 cut(s) 826
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 49, 248
BmiI GGNNCC 4 cut(s) 11, 684, 971, 1222
BmrFI CCNGG 1 cut(s) 826
BmrI ACTGGG 3 cut(s) 120, 387, 1187
BmsI GCATC 4 cut(s) 77, 216, 698, 913
BmuI ACTGGG 3 cut(s) 120, 387, 1187
BpiI GAAGAC 2 cut(s) 411, 486
BplI GAGNNNNNCTC 2 cut(s) 844, 876
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 1305
BsaJI CCNNGG 3 cut(s) 153, 628, 825
BsaWI WCCGGW 1 cut(s) 1005
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 956, 957
Bse1I ACTGG 8 cut(s) 81, 115, 382, 413, 503, 784, 882, 1182
BseAI TCCGGA 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 826
BseDI CCNNGG 3 cut(s) 153, 628, 825
BseGI GGATG 5 cut(s) 474, 507, 666, 985, 1298
BseLI CCNNNNNNNGG 2 cut(s) 956, 957
BseMII CTCAG 5 cut(s) 272, 596, 684, 716, 912
BseNI ACTGG 8 cut(s) 81, 115, 382, 413, 503, 784, 882, 1182
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 3 cut(s) 280, 743, 826
BseYI CCCAGC 3 cut(s) 635, 914, 1235
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 1133
BshFI GGCC 3 cut(s) 50, 768, 1164
BshNI GGYRCC 1 cut(s) 1220
BsiEI CGRYCG 1 cut(s) 1133
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 1006
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 2 cut(s) 956, 957
BsmAI GTCTC 2 cut(s) 601, 847
BsmFI GGGAC 1 cut(s) 974
BsnI GGCC 3 cut(s) 50, 768, 1164
Bsp1286I GDGCHC 3 cut(s) 117, 259, 832
Bsp13I TCCGGA 1 cut(s) 1005
Bsp143I GATC 4 cut(s) 344, 969, 1130, 1263
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 4 cut(s) 21, 97, 389, 1224
BspANI GGCC 3 cut(s) 50, 768, 1164
BspCNI CTCAG 5 cut(s) 271, 597, 685, 715, 911
BspEI TCCGGA 1 cut(s) 1005
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 4 cut(s) 11, 684, 971, 1222
BspMAI CTGCAG 1 cut(s) 1126
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 3 cut(s) 964, 977, 1258
BspQI GCTCTTC 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 1220
BsrI ACTGG 8 cut(s) 81, 115, 382, 413, 503, 784, 882, 1182
BssECI CCNNGG 3 cut(s) 153, 628, 825
BssMI GATC 4 cut(s) 344, 969, 1130, 1263
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 153, 628
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 4 cut(s) 193, 764, 1033, 1150
Bst6I CTCTTC 4 cut(s) 624, 845, 867, 1256
BstAPI GCANNNNNTGC 1 cut(s) 911
BstC8I GCNNGC 3 cut(s) 131, 687, 1162
BstDEI CTNAG 5 cut(s) 258, 605, 693, 702, 898
BstF5I GGATG 5 cut(s) 474, 507, 666, 985, 1298
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 4 cut(s) 347, 972, 1133, 1266
BstMAI GTCTC 2 cut(s) 601, 847
BstMBI GATC 4 cut(s) 344, 969, 1130, 1263
BstMCI CGRYCG 1 cut(s) 1133
BstMWI GCNNNNNNNGC 8 cut(s) 135, 632, 836, 911, 932, 1161, 1213, 1232
BstNI CCWGG 1 cut(s) 826
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 1 cut(s) 824
BstSFI CTRYAG 3 cut(s) 201, 819, 1122
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 280, 743, 826
BstV2I GAAGAC 2 cut(s) 411, 486
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 3 cut(s) 50, 768, 1164
BtsCI GGATG 5 cut(s) 474, 507, 666, 985, 1298
BtsIMutI CAGTG 3 cut(s) 88, 189, 1175
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 3 cut(s) 131, 687, 1162
CaiI CAGNNNCTG 1 cut(s) 692
Cfr13I GGNCC 2 cut(s) 49, 248
Csp6I GTAC 1 cut(s) 430
CviAII CATG 6 cut(s) 310, 796, 833, 932, 991, 1156
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 5 cut(s) 258, 605, 693, 702, 898
DpnI GATC 4 cut(s) 346, 971, 1132, 1265
DpnII GATC 4 cut(s) 344, 969, 1130, 1263
DraIII CACNNNGTG 1 cut(s) 1282
Eam1104I CTCTTC 4 cut(s) 624, 845, 867, 1256
EarI CTCTTC 4 cut(s) 624, 845, 867, 1256
EciI GGCGGA 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 153, 628
Eco24I GRGCYC 2 cut(s) 117, 832
Eco32I GATATC 1 cut(s) 1185
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 2 cut(s) 729, 1151
EcoO109I RGGNCCY 2 cut(s) 49, 248
EcoRII CCWGG 1 cut(s) 824
EcoRV GATATC 1 cut(s) 1185
EcoT14I CCWWGG 2 cut(s) 153, 628
EcoT38I GRGCYC 2 cut(s) 117, 832
ErhI CCWWGG 2 cut(s) 153, 628
FaeI CATG 6 cut(s) 313, 799, 836, 935, 994, 1159
FaqI GGGAC 1 cut(s) 974
FatI CATG 6 cut(s) 309, 795, 832, 931, 990, 1155
Fnu4HI GCNGC 3 cut(s) 294, 732, 840
FokI GGATG 5 cut(s) 481, 514, 673, 992, 1285
FriOI GRGCYC 2 cut(s) 117, 832
Fsp4HI GCNGC 3 cut(s) 294, 732, 840
FspBI CTAG 2 cut(s) 72, 1001
GluI GCNGC 3 cut(s) 294, 732, 840
GsaI CCCAGC 3 cut(s) 639, 918, 1239
HaeIII GGCC 3 cut(s) 50, 768, 1164
HapII CCGG 1 cut(s) 1006
Hin1II CATG 6 cut(s) 313, 799, 836, 935, 994, 1159
HincII GTYRAC 1 cut(s) 1098
HindII GTYRAC 1 cut(s) 1098
HindIII AAGCTT 3 cut(s) 136, 230, 871
HinfI GANTC 2 cut(s) 815, 1246
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 3 cut(s) 325, 728, 1287
Hpy166II GTNNAC 4 cut(s) 189, 241, 777, 1098
Hpy188I TCNGA 4 cut(s) 9, 261, 400, 694
Hpy188III TCNNGA 3 cut(s) 424, 900, 1006
Hpy8I GTNNAC 4 cut(s) 189, 241, 777, 1098
HpyAV CCTTC 4 cut(s) 522, 1175, 1277, 1313
HpyCH4III ACNGT 4 cut(s) 193, 764, 1033, 1150
HpyCH4V TGCA 7 cut(s) 133, 296, 512, 842, 1058, 1064, 1124
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 632, 836, 911, 932, 1161, 1213, 1232
HpyF3I CTNAG 5 cut(s) 258, 605, 693, 702, 898
Hsp92II CATG 6 cut(s) 313, 799, 836, 935, 994, 1159
Kpn2I TCCGGA 1 cut(s) 1005
Kzo9I GATC 4 cut(s) 344, 969, 1130, 1263
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 3 cut(s) 9, 682, 902
Lsp1109I GCAGC 3 cut(s) 280, 743, 826
LweI GCATC 4 cut(s) 77, 216, 698, 913
MaeI CTAG 2 cut(s) 72, 1001
MaeIII GTNAC 2 cut(s) 16, 1171
MalI GATC 4 cut(s) 346, 971, 1132, 1265
MboI GATC 4 cut(s) 344, 969, 1130, 1263
MboII GAAGA 8 cut(s) 46, 416, 491, 563, 611, 854, 862, 1243
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 1 cut(s) 969
MhlI GDGCHC 3 cut(s) 117, 259, 832
MluCI AATT 5 cut(s) 263, 371, 488, 648, 1077
MlyI GAGTC 1 cut(s) 1240
MroI TCCGGA 1 cut(s) 1005
MseI TTAA 2 cut(s) 666, 1308
MslI CAYNNNNRTG 1 cut(s) 1259
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 1 cut(s) 826
MunI CAATTG 1 cut(s) 1077
MvaI CCWGG 1 cut(s) 826
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 8 cut(s) 135, 632, 836, 911, 932, 1161, 1213, 1232
NdeII GATC 4 cut(s) 344, 969, 1130, 1263
NlaIII CATG 6 cut(s) 313, 799, 836, 935, 994, 1159
NlaIV GGNNCC 4 cut(s) 11, 684, 971, 1222
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 16, 1171
NspI RCATGY 1 cut(s) 935
PaqCI CACCTGC 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 3 cut(s) 295, 733, 841
Ple19I CGATCG 1 cut(s) 1133
PleI GAGTC 1 cut(s) 1240
PpsI GAGTC 1 cut(s) 1240
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 824
PspFI CCCAGC 3 cut(s) 635, 914, 1235
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 4 cut(s) 11, 684, 971, 1222
PspPI GGNCC 2 cut(s) 49, 248
PspPPI RGGWCCY 1 cut(s) 248
PstI CTGCAG 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 969
PvuI CGATCG 1 cut(s) 1133
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 1259
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 2 cut(s) 666, 1308
SatI GCNGC 3 cut(s) 294, 732, 840
Sau3AI GATC 4 cut(s) 344, 969, 1130, 1263
Sau96I GGNCC 2 cut(s) 49, 248
SchI GAGTC 1 cut(s) 1240
ScrFI CCNGG 1 cut(s) 826
SduI GDGCHC 3 cut(s) 117, 259, 832
SfaNI GCATC 4 cut(s) 77, 216, 698, 913
SfcI CTRYAG 3 cut(s) 201, 819, 1122
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 1 cut(s) 1320
SmoI CTYRAG 1 cut(s) 1320
SpeI ACTAGT 1 cut(s) 1000
Sse9I AATT 5 cut(s) 263, 371, 488, 648, 1077
SsiI CCGC 4 cut(s) 21, 97, 389, 1224
SspMI CTAG 2 cut(s) 72, 1001
StyD4I CCNGG 1 cut(s) 824
StyI CCWWGG 2 cut(s) 153, 628
TaaI ACNGT 4 cut(s) 193, 764, 1033, 1150
TaqI TCGA 2 cut(s) 423, 1129
TasI AATT 5 cut(s) 263, 371, 488, 648, 1077
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 2 cut(s) 666, 1308
Tru9I TTAA 2 cut(s) 666, 1308
TscAI CASTG 3 cut(s) 88, 196, 1182
TseFI GTSAC 2 cut(s) 16, 1171
TseI GCWGC 3 cut(s) 293, 731, 839
Tsp45I GTSAC 2 cut(s) 16, 1171
TspDTI ATGAA 2 cut(s) 417, 1007
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 3 cut(s) 88, 196, 1182
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 2 cut(s) 371, 488
XceI RCATGY 1 cut(s) 935
XspI CTAG 2 cut(s) 72, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.