MD07G1040600.v1.1

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001655
Physical Location & Seq
Reverse (-)
3411038 .. 3413888
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1040600.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGTTTCGGAGCCGAGTGGTAGGGTTGTTTTTGAAGAACAATGGCAAGGCTCTGTACAATCTCAGAGGAACGACACCGTCTAGGTTTCTGAATGAGGAGTCCTTTAGATTACTCTCAACGGGAGTCACAAGGAAATGCTTGGATGGCTTTCGGTCTTTGCCCAATGTTCCTTTCTCTCCTTGTTTCGGTAACTATGTACCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATTCAAAATAAGGAGGGATGGAAGCTTCTTGTAAATGGAGGACCTCATGCTCAGAAAATGGTTGGCATTTGGCTTTTTGGCTCGCCTGCATGGGTTTTTAGTAAGGTGATACTTGGCGGTATTACACAACTTACACGATCTGGTCTTTCTATGACTGATTGGAAATTTACTGGGGGGGGCTACTGCCTCTCTCAGATGAGGACTGGCTGCTTGAATTTGAGAAGTACAAGCAGTCCCCTGAGTATAAGCGGTGTAAATCGAGGTATGGGTACTGAAGATTTCAAATTTATATATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCTCTGGGTATTATGTTTGCATTGCCATTCTCATATTTTCTTCGTAAGGGGTATATTACCTTACAGCTTGGAGTGAGACTTTCTGCTCTTTTTGCCCTTGGTGCTGGGCAGGGTTTAATTGGCTGGTGGATGGTTAAAAGTGGATTAGAGGAGCCACCAACTGAGTATGCTCAGCCAAGAGTAAGTCCTTACCGTCTTGCAGCTTATCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTATGGACTGTTCTTTCTGTCGTCATGCCTGAACCACCTGCTGAATCGCCAGCTTGGGTTCGTGGGGCAGCAAAGGTGAAGCGACTTGTCCTCCCTGTAAGCTTAATTGTTGGAGTAACAGCTGTGTCAGGAGCATTTGTTGCCGGGAATGATGCTGGGCATGCCTATAATACCTTGCGTAGGCCATCAGCGTCCCTTCTTAAATCACTGCCTCAAGTTGCAAAGACAATCTAG

Protein Analysis

346

Amino Acids

37.78

Weight (kDa)

10.22

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 102 - 332 2.8e-59 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 850
Acc36I ACCTGC 1 cut(s) 850
AciI CCGC 2 cut(s) 354, 486
AcsI RAATTY 3 cut(s) 401, 451, 521
AcuI CTGAAG 2 cut(s) 531, 762
AfaI GTAC 4 cut(s) 56, 198, 463, 508
AfiI CCNNNNNNNGG 2 cut(s) 185, 984
AgsI TTSAA 4 cut(s) 34, 242, 451, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 6 cut(s) 262, 631, 767, 857, 906, 926
AluI AGCT 6 cut(s) 262, 631, 767, 857, 906, 926
Alw26I GTCTC 1 cut(s) 634
AoxI GGCC 2 cut(s) 799, 986
ApeKI GCWGC 3 cut(s) 444, 764, 872
ApoI RAATTY 3 cut(s) 401, 451, 521
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 949
AsuHPI GGTGA 2 cut(s) 355, 892
AvaII GGWCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 568
BbvI GCAGC 3 cut(s) 431, 776, 884
BccI CCATC 6 cut(s) 137, 208, 249, 529, 688, 997
BcnI CCSGG 1 cut(s) 949
BcoDI GTCTC 1 cut(s) 634
BfaI CTAG 2 cut(s) 81, 1036
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 850
BisI GCNGC 3 cut(s) 445, 765, 873
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 3 cut(s) 446, 766, 874
Bme1390I CCNGG 1 cut(s) 949
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 11, 717
BmrFI CCNGG 1 cut(s) 949
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 946
BmuI ACTGGG 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 1002
BpuMI CCSGG 1 cut(s) 949
BsaJI CCNNGG 1 cut(s) 661
BsaXI ACNNNNNCTCC 4 cut(s) 879, 909, 927, 957
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 984
Bse1I ACTGG 2 cut(s) 412, 445
Bse3DI GCAATG 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 4 cut(s) 148, 260, 540, 699
BseLI CCNNNNNNNGG 2 cut(s) 185, 984
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 6 cut(s) 76, 302, 443, 467, 717, 749
BseNI ACTGG 2 cut(s) 412, 445
BseRI GAGGAG 2 cut(s) 110, 728
BseXI GCAGC 3 cut(s) 431, 776, 884
BseYI CCCAGC 2 cut(s) 668, 959
BshFI GGCC 2 cut(s) 801, 988
BsiSI CCGG 1 cut(s) 948
BslFI GGGAC 2 cut(s) 456, 982
BslI CCNNNNNNNGG 2 cut(s) 185, 984
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 2 cut(s) 456, 982
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 2 cut(s) 801, 988
Bsp1286I GDGCHC 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 374
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 2 cut(s) 354, 486
BspANI GGCC 2 cut(s) 801, 988
BspCNI CTCAG 6 cut(s) 75, 301, 442, 468, 718, 748
BspLI GGNNCC 2 cut(s) 11, 717
BspMI ACCTGC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 412, 445
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 661
Bst4CI ACNGT 5 cut(s) 78, 223, 758, 797, 814
BstAPI GCANNNNNTGC 1 cut(s) 944
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 4 cut(s) 320, 324, 855, 966
BstDEI CTNAG 6 cut(s) 62, 288, 429, 476, 726, 735
BstENI CCTNNNNNAGG 1 cut(s) 982
BstF5I GGATG 4 cut(s) 148, 260, 540, 699
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 5 cut(s) 144, 656, 665, 944, 965
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 1 cut(s) 947
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 431, 776, 884
BsuRI GGCC 2 cut(s) 801, 988
BtsCI GGATG 4 cut(s) 148, 260, 540, 699
BtsI GCAGTG 1 cut(s) 1010
BtsIMutI CAGTG 2 cut(s) 219, 1010
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 4 cut(s) 320, 324, 855, 966
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 984
Csp6I GTAC 4 cut(s) 55, 197, 462, 507
CviAII CATG 4 cut(s) 284, 327, 829, 965
CviQI GTAC 4 cut(s) 55, 197, 462, 507
DdeI CTNAG 6 cut(s) 62, 288, 429, 476, 726, 735
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 531, 762
EcoNI CCTNNNNNAGG 1 cut(s) 982
EcoO109I RGGNCCY 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 4 cut(s) 287, 330, 832, 968
FaqI GGGAC 2 cut(s) 456, 982
FatI CATG 4 cut(s) 283, 326, 828, 964
Fnu4HI GCNGC 3 cut(s) 445, 765, 873
FokI GGATG 4 cut(s) 155, 267, 547, 706
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 3 cut(s) 445, 765, 873
FspBI CTAG 2 cut(s) 81, 1036
GluI GCNGC 3 cut(s) 445, 765, 873
GsaI CCCAGC 2 cut(s) 672, 963
HaeIII GGCC 2 cut(s) 801, 988
HapII CCGG 1 cut(s) 948
HgaI GACGC 1 cut(s) 984
Hin1II CATG 4 cut(s) 287, 330, 832, 968
HindIII AAGCTT 2 cut(s) 260, 904
HinfI GANTC 3 cut(s) 98, 123, 848
HpaII CCGG 1 cut(s) 948
HphI GGTGA 2 cut(s) 355, 892
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 5 cut(s) 9, 65, 90, 291, 432
Hpy188III TCNNGA 1 cut(s) 933
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 2 cut(s) 555, 1010
HpyCH4III ACNGT 5 cut(s) 78, 223, 758, 797, 814
HpyCH4V TGCA 5 cut(s) 326, 545, 584, 764, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 656, 665, 944, 965
HpyF3I CTNAG 6 cut(s) 62, 288, 429, 476, 726, 735
Hsp92II CATG 4 cut(s) 287, 330, 832, 968
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 3 cut(s) 9, 715, 935
Lsp1109I GCAGC 3 cut(s) 431, 776, 884
LweI GCATC 1 cut(s) 946
MaeI CTAG 2 cut(s) 81, 1036
MaeIII GTNAC 3 cut(s) 124, 188, 919
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 3 cut(s) 46, 524, 596
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 5 cut(s) 401, 451, 521, 681, 909
MlyI GAGTC 2 cut(s) 107, 132
MmeI TCCRAC 1 cut(s) 895
MseI TTAA 4 cut(s) 680, 699, 908, 1005
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 1 cut(s) 948
MspR9I CCNGG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 5 cut(s) 144, 656, 665, 944, 965
NciI CCSGG 1 cut(s) 949
NdeII GATC 1 cut(s) 374
NlaIII CATG 4 cut(s) 287, 330, 832, 968
NlaIV GGNNCC 2 cut(s) 11, 717
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 968
PaeI GCATGC 1 cut(s) 968
PaqCI CACCTGC 1 cut(s) 850
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 446, 766, 874
PleI GAGTC 2 cut(s) 106, 131
PpsI GAGTC 2 cut(s) 106, 131
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspFI CCCAGC 2 cut(s) 668, 959
PspN4I GGNNCC 2 cut(s) 11, 717
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 56, 198, 463, 508
RsaNI GTAC 4 cut(s) 55, 197, 462, 507
SaqAI TTAA 4 cut(s) 680, 699, 908, 1005
SatI GCNGC 3 cut(s) 445, 765, 873
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 107, 132
ScrFI CCNGG 1 cut(s) 949
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
SphI GCATGC 1 cut(s) 968
Sse9I AATT 5 cut(s) 401, 451, 521, 681, 909
SsiI CCGC 2 cut(s) 354, 486
SspMI CTAG 2 cut(s) 81, 1036
StyD4I CCNGG 1 cut(s) 947
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 5 cut(s) 78, 223, 758, 797, 814
TaqI TCGA 1 cut(s) 496
TaqII GACCGA 1 cut(s) 141
TasI AATT 5 cut(s) 401, 451, 521, 681, 909
TatI WGTACW 2 cut(s) 54, 461
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 4 cut(s) 680, 699, 908, 1005
Tru9I TTAA 4 cut(s) 680, 699, 908, 1005
TscAI CASTG 2 cut(s) 226, 1017
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 444, 764, 872
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 2 cut(s) 226, 1017
Tth111I GACNNNGTC 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 982
XapI RAATTY 3 cut(s) 401, 451, 521
XceI RCATGY 1 cut(s) 968
XspI CTAG 2 cut(s) 81, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.