RLG00000014008

Cytochrome c oxidase assembly protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
45549212 .. 45554369
5158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014008

Sequence Viewer

Length: 1371 bp
ATGTCCACTGTGGCTTCTGTAGGCATCAAAGATAAGGAGGGATTGAAGCTTCTTGTAAACGGAGGACCTCGTGCTCAGAAATTGATTGGCATTTGGCTTTTCGGCTCTGCAGCATGGGTGTTTAGCATGGTGATACTTGGAGGTGCTACACGACTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCGCCTCTCTCTGATGAAGACTGGTTGATTGAGTTCGAGAAGTACAAGCAATCCCCTGAATATAAGTGTGTAAATAAAGGGATGAGTATTGAAGACTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGCTTTGCCATTCTCATATTTTCTTCGTAAGGGGTATATTACCTTACAACTTGGACTGAGACTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAGGGTCTAATTGCATCTGAGTATGCTCAGCCAAGACTAAGCCCTTCCCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTGTGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCTGCTGAATCTGTAGCCTGGGTTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGCTTACTGGTTGGGATTACTGCTATCTCAGGAGCATTTGTTGCCGGGAATGATGCTCTTGACCACCGTATCCTTGCAACTGCAACTTTATTTTCAATTGTCACTTTGTGGTGGTCAACAAGGAAGTTTTACATACACCCTGCAGTTCAATCGTTGATTGGAACTACTGTTGGCATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCATATGTGCCTGTTGAGCATGGCACTGCACATCAAGCTGGGGCATTGACTCTTTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTATCTCAAGGCTTCTATGTACCATATCCTATTGTCATATCAATTCCTCTTCTGTTGAATACACGGAAACCTTTCTCATCGTTATTGTCAAGTGGAAACAGTGTCGAAATGGAAACAGTAGTAGAAACAGACGTCTCCGACTGCCCTCCTCCTCTAGACCCCGAGAGCCTGTCGTCCACCGCCGCCTCGTCGTCCCTGAAGCAGCCCCAAAACAACCAAGTGCGATTACAAACCCGAGGCAAGATCAAAGCCTTCAACTTTCTCTTCCGGCCAAACCACCTCCGCAAGCACGAAGGAGGTGAGCCTCATCCTGCTAACACCTGCAACACTGGAGCGGCCTGCTGCAGATGGGATTGGAATGCCGCCGCACTGCTACACGAAACCTAG

Protein Analysis

457

Amino Acids

49.77

Weight (kDa)

9.33

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 31 - 237 9.2e-63 Cytochrome oxidase assembly protein
COX15-CtaA PF02628 237 - 312 8.3e-13 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 598, 1313
AatII GACGTC 1 cut(s) 1119
Acc36I ACCTGC 2 cut(s) 598, 1313
AccBSI CCGCTC 1 cut(s) 1319
AciI CCGC 7 cut(s) 206, 1164, 1167, 1267, 1319, 1347, 1350
AclWI GGATC 1 cut(s) 928
AcoI YGGCCR 1 cut(s) 1253
AcsI RAATTY 2 cut(s) 188, 305
AcuI CTGAAG 3 cut(s) 510, 821, 1202
AcyI GRCGYC 1 cut(s) 1116
AdeI CACNNNGTG 2 cut(s) 759, 952
AfaI GTAC 2 cut(s) 248, 1005
AgsI TTSAA 8 cut(s) 46, 174, 296, 304, 747, 800, 1042, 1240
AjnI CCWGG 1 cut(s) 605
AluBI AGCT 4 cut(s) 49, 515, 654, 905
AluI AGCT 4 cut(s) 49, 515, 654, 905
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 3 cut(s) 418, 628, 1123
AlwI GGATC 1 cut(s) 928
Ama87I CYCGRG 2 cut(s) 1145, 1218
AoxI GGCC 4 cut(s) 547, 832, 1253, 1320
ApeKI GCWGC 5 cut(s) 110, 512, 620, 1186, 1326
ApoI RAATTY 2 cut(s) 188, 305
Asp700I GAANNNNTTC 1 cut(s) 1055
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 4 cut(s) 142, 509, 957, 1295
AvaI CYCGRG 2 cut(s) 1145, 1218
AvaII GGWCC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 703, 736
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 228, 303
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 5 cut(s) 122, 524, 607, 1198, 1313
BccI CCATC 4 cut(s) 313, 970, 976, 1326
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 1 cut(s) 607
BciVI GTATCC 1 cut(s) 731
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 3 cut(s) 418, 628, 1123
BfaI CTAG 2 cut(s) 1139, 1369
BfmI CTRYAG 5 cut(s) 18, 108, 600, 792, 1327
BfuAI ACCTGC 2 cut(s) 598, 1313
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 9 cut(s) 111, 513, 621, 1167, 1187, 1320, 1327, 1347, 1350
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 9 cut(s) 112, 514, 622, 1168, 1188, 1321, 1328, 1348, 1351
Bme1390I CCNGG 2 cut(s) 607, 697
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 2 cut(s) 1145, 1218
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 607, 697
BmrI ACTGGG 2 cut(s) 204, 857
BmsI GCATC 3 cut(s) 33, 479, 694
BmuI ACTGGG 2 cut(s) 204, 857
BpiI GAAGAC 2 cut(s) 228, 303
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpmI CTGGAG 1 cut(s) 1335
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 1116
BsaJI CCNNGG 3 cut(s) 445, 606, 1219
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bse1I ACTGG 7 cut(s) 199, 230, 320, 565, 663, 852, 1318
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 3 cut(s) 445, 606, 1219
BseGI GGATG 4 cut(s) 291, 324, 968, 1291
BseMII CTCAG 5 cut(s) 89, 413, 465, 497, 693
BseNI ACTGG 7 cut(s) 199, 230, 320, 565, 663, 852, 1318
BseRI GAGGAG 2 cut(s) 1122, 1125
BseXI GCAGC 5 cut(s) 122, 524, 607, 1198, 1313
BseYI CCCAGC 2 cut(s) 452, 905
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 4 cut(s) 549, 834, 1255, 1322
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 2 cut(s) 1145, 1218
BsiSI CCGG 2 cut(s) 696, 1252
BslFI GGGAC 1 cut(s) 1162
BsmAI GTCTC 3 cut(s) 418, 628, 1123
BsmBI CGTCTC 1 cut(s) 1123
BsmFI GGGAC 1 cut(s) 1162
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 4 cut(s) 549, 834, 1255, 1322
BsoBI CYCGRG 2 cut(s) 1145, 1218
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 161, 933, 1227
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 7 cut(s) 206, 1164, 1167, 1267, 1319, 1347, 1350
BspANI GGCC 4 cut(s) 549, 834, 1255, 1322
BspCNI CTCAG 5 cut(s) 88, 414, 466, 496, 692
BspMAI CTGCAG 3 cut(s) 112, 796, 1331
BspMI ACCTGC 2 cut(s) 598, 1313
BspPI GGATC 1 cut(s) 928
BspQI GCTCTTC 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 1319
BsrI ACTGG 7 cut(s) 199, 230, 320, 565, 663, 852, 1318
BssECI CCNNGG 3 cut(s) 445, 606, 1219
BssMI GATC 3 cut(s) 161, 933, 1227
BssNI GRCGYC 1 cut(s) 1116
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 445
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 6 cut(s) 10, 545, 719, 820, 1085, 1102
Bst6I CTCTTC 5 cut(s) 441, 626, 648, 1038, 1253
BstACI GRCGYC 1 cut(s) 1116
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 832, 1271, 1324
BstDEI CTNAG 6 cut(s) 75, 422, 474, 483, 494, 679
BstF5I GGATG 4 cut(s) 291, 324, 968, 1291
BstKTI GATC 3 cut(s) 164, 936, 1230
BstMAI GTCTC 3 cut(s) 418, 628, 1123
BstMBI GATC 3 cut(s) 161, 933, 1227
BstMWI GCNNNNNNNGC 5 cut(s) 449, 692, 831, 883, 902
BstNI CCWGG 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 605, 695
BstSFI CTRYAG 5 cut(s) 18, 108, 600, 792, 1327
BstV1I GCAGC 5 cut(s) 122, 524, 607, 1198, 1313
BstV2I GAAGAC 2 cut(s) 228, 303
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 4 cut(s) 549, 834, 1255, 1322
BtsCI GGATG 4 cut(s) 291, 324, 968, 1291
BtsI GCAGTG 2 cut(s) 891, 1352
BtsIMutI CAGTG 6 cut(s) 6, 845, 891, 1090, 1311, 1352
BveI ACCTGC 2 cut(s) 598, 1313
Cac8I GCNNGC 3 cut(s) 832, 1271, 1324
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 247, 1004
CviAII CATG 6 cut(s) 114, 127, 577, 614, 826, 887
CviQI GTAC 2 cut(s) 247, 1004
DdeI CTNAG 6 cut(s) 75, 422, 474, 483, 494, 679
DpnI GATC 3 cut(s) 163, 935, 1229
DpnII GATC 3 cut(s) 161, 933, 1227
DraIII CACNNNGTG 2 cut(s) 759, 952
EaeI YGGCCR 1 cut(s) 1253
Eam1104I CTCTTC 5 cut(s) 441, 626, 648, 1038, 1253
EarI CTCTTC 5 cut(s) 441, 626, 648, 1038, 1253
EciI GGCGGA 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 445
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 3 cut(s) 510, 821, 1202
Eco88I CYCGRG 2 cut(s) 1145, 1218
EcoO109I RGGNCCY 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 605
EcoRV GATATC 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
Esp3I CGTCTC 1 cut(s) 1123
FaeI CATG 6 cut(s) 117, 130, 580, 617, 829, 890
FaqI GGGAC 1 cut(s) 1162
FatI CATG 6 cut(s) 113, 126, 576, 613, 825, 886
FauNDI CATATG 1 cut(s) 871
Fnu4HI GCNGC 9 cut(s) 111, 513, 621, 1167, 1187, 1320, 1327, 1347, 1350
FokI GGATG 4 cut(s) 298, 331, 955, 1278
Fsp4HI GCNGC 9 cut(s) 111, 513, 621, 1167, 1187, 1320, 1327, 1347, 1350
FspBI CTAG 2 cut(s) 1139, 1369
GluI GCNGC 9 cut(s) 111, 513, 621, 1167, 1187, 1320, 1327, 1347, 1350
GsaI CCCAGC 2 cut(s) 456, 909
GsuI CTGGAG 1 cut(s) 1335
HaeIII GGCC 4 cut(s) 549, 834, 1255, 1322
HapII CCGG 2 cut(s) 696, 1252
Hin1I GRCGYC 1 cut(s) 1116
Hin1II CATG 6 cut(s) 117, 130, 580, 617, 829, 890
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HindIII AAGCTT 2 cut(s) 47, 652
HinfI GANTC 2 cut(s) 596, 916
HpaII CCGG 2 cut(s) 696, 1252
HphI GGTGA 4 cut(s) 142, 509, 957, 1295
Hpy166II GTNNAC 5 cut(s) 6, 58, 558, 768, 1161
Hpy188I TCNGA 4 cut(s) 78, 217, 475, 1123
Hpy188III TCNNGA 5 cut(s) 241, 504, 681, 710, 1139
Hpy8I GTNNAC 5 cut(s) 6, 58, 558, 768, 1161
Hpy99I CGWCG 1 cut(s) 1177
HpyAV CCTTC 7 cut(s) 339, 510, 845, 947, 983, 1246, 1271
HpyCH4III ACNGT 6 cut(s) 10, 545, 719, 820, 1085, 1102
HpyCH4IV ACGT 1 cut(s) 1116
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 692, 831, 883, 902
HpyF3I CTNAG 6 cut(s) 75, 422, 474, 483, 494, 679
HpySE526I ACGT 1 cut(s) 1116
Hsp92I GRCGYC 1 cut(s) 1116
Hsp92II CATG 6 cut(s) 117, 130, 580, 617, 829, 890
Kzo9I GATC 3 cut(s) 161, 933, 1227
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 683, 1316
Lsp1109I GCAGC 5 cut(s) 122, 524, 607, 1198, 1313
LweI GCATC 3 cut(s) 33, 479, 694
MaeI CTAG 2 cut(s) 1139, 1369
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 2 cut(s) 751, 841
MalI GATC 3 cut(s) 163, 935, 1229
MbiI CCGCTC 1 cut(s) 1319
MboI GATC 3 cut(s) 161, 933, 1227
MboII GAAGA 8 cut(s) 233, 308, 380, 428, 635, 643, 1025, 1240
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 6 cut(s) 80, 188, 305, 465, 747, 1026
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 1 cut(s) 1146
MroXI GAANNNNTTC 1 cut(s) 1055
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 929
MspI CCGG 2 cut(s) 696, 1252
MspR9I CCNGG 2 cut(s) 607, 697
MunI CAATTG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 1348
MvaI CCWGG 1 cut(s) 607
MwoI GCNNNNNNNGC 5 cut(s) 449, 692, 831, 883, 902
NciI CCSGG 1 cut(s) 697
NdeI CATATG 1 cut(s) 871
NdeII GATC 3 cut(s) 161, 933, 1227
NlaIII CATG 6 cut(s) 117, 130, 580, 617, 829, 890
NmuCI GTSAC 2 cut(s) 751, 841
PaqCI CACCTGC 2 cut(s) 598, 1313
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 1348
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 9 cut(s) 112, 514, 622, 1168, 1188, 1321, 1328, 1348, 1351
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 605
PspFI CCCAGC 2 cut(s) 452, 905
PspGI CCWGG 1 cut(s) 605
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PsrI GAACNNNNNNTAC 2 cut(s) 594, 626
PstI CTGCAG 3 cut(s) 112, 796, 1331
RsaI GTAC 2 cut(s) 248, 1005
RsaNI GTAC 2 cut(s) 247, 1004
RseI CAYNNNNRTG 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 9 cut(s) 111, 513, 621, 1167, 1187, 1320, 1327, 1347, 1350
Sau3AI GATC 3 cut(s) 161, 933, 1227
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 2 cut(s) 607, 697
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 3 cut(s) 33, 479, 694
SfcI CTRYAG 5 cut(s) 18, 108, 600, 792, 1327
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 1 cut(s) 990
SmoI CTYRAG 1 cut(s) 990
Sse9I AATT 6 cut(s) 80, 188, 305, 465, 747, 1026
SsiI CCGC 7 cut(s) 206, 1164, 1167, 1267, 1319, 1347, 1350
SspMI CTAG 2 cut(s) 1139, 1369
StyD4I CCNGG 2 cut(s) 605, 695
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 6 cut(s) 10, 545, 719, 820, 1085, 1102
TaiI ACGT 1 cut(s) 1119
TaqI TCGA 2 cut(s) 240, 1089
TasI AATT 6 cut(s) 80, 188, 305, 465, 747, 1026
TatI WGTACW 1 cut(s) 246
TauI GCSGC 4 cut(s) 1169, 1322, 1349, 1352
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 6 cut(s) 13, 852, 898, 1090, 1318, 1359
TseFI GTSAC 2 cut(s) 751, 841
TseI GCWGC 5 cut(s) 110, 512, 620, 1186, 1326
Tsp45I GTSAC 2 cut(s) 751, 841
TspDTI ATGAA 2 cut(s) 234, 602
TspGWI ACGGA 2 cut(s) 75, 1063
TspRI CASTG 6 cut(s) 13, 852, 898, 1090, 1318, 1359
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 188, 305
XbaI TCTAGA 1 cut(s) 1138
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 2 cut(s) 1139, 1369
ZraI GACGTC 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.