Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001655

Physical Location & Seq

Genomic Coordinates Reverse (-)

32604949 .. 32609833

Gene Structure 4885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1271400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTTTCGGAGTCGAGTGGTAGGGTTGTTTTTGAAGAACAATGGCAAGGCTCTGTACAATATCAAAGGAACGACGCCGTCTAGGGTTCTGAATGAGGAGTCCTTCAGATTACTCTCAACGGGAGTCACAAGGAAATGCTTGGATGGCTTTCGATCCTTGCCCAAGGGTAACTATGTACCATCTATAAGGAATATGTCCACTGTGGCTTCCGTAGGCATTCAAAATAAGGAGGGATTGAAGCTTCTTGTAAATGGAGGACCTCATGCTCAGAAAATGGTTGGCATTTGGCTTTTTGGCTCTGCTGCATGGGTTTTTAGTATGGTGATACTTGGCGGTATTACACGACTTACACGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGTCTCCCGCCTCTCTCAGATGAGGATTGGCTACTTGAGTTTGAGAAGTACAAGCAGTCCCCGGAGTATAAGCGTGTAAATCGAGGGATGAGTATTGACGATTTCAAATTTATCTATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTGGGTATTATGTTTGCCTTGCCATTCTCATATTTTCTTCGTAAGGGGTATATTACCTTACAGCTTGGAGCGAGACTCTCGACTCTTTTTGCCCTTGGTGCTGGGCAGGGTTTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCACCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGTCTTGCAGCTCATCTTACTTCAGCCTTTGCTATATATTGTGGCCTTTTATGGACTGGTCTTTCTGTTGTCATGCCCGAACCACCTGCTGAATCTCTAGCTTGGGTACGTGGGGCAGCAAAGGTGAAGCAACTTGCTCTCCCTGTAAGCTTACTTGTTGGAGTAACTGCTGTCTCAGGAGCATTTGTTGCCGGGAATGATGCTGGGCATGCCTATAATACTTTTCCAAAGATGGGGGATACATGGATCCCAGAGGATGTGTTTGAAATGAAGCCACTCATCCGGAACTTCTTCGAGAATACATCTACTGTGCAGCTTGACCATCGCATCCTTGCAACTGCAACTTTGTTCTCAATCGGTGCTTTATGGTGGTCAACAAGGAAGTTTGACATCCATCCGGCAGTTCGATCTTTGATTGGAAGTGCTGTTGGCATGGCTGGCCTTCAGGTCACTCTGGGGATATCTACACGCTGCTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

405

Amino Acids

44.69

Weight (kDa)

9.75

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX15-CtaA	PF02628	95 - 400	2e-104	Cytochrome oxidase assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56090
fragaria_vesca	FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_3g41910
malus_domestica	MD02G1271400.v1.1 MD07G1040600.v1.1
prunus_persica	Prupe.4G230100_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1
pyrus_communis	pycom02g23200
rosa_chinensis	RchiOBHm_Chr5g0075121 RchiOBHm_Chr6g0267391
rosa_laevigata	RLG00000014008 RLG00000014012 RLG00000036531
rosa_multiflora	Rmu_sc0000746.1_g000001 Rmu_ssc0000217.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006500 Rroxscaffold_7G00200820
rosa_rugosa	Rorug05G0436400 Rorug05G0436500 Rorug06G0032200 Rorug06G0032300 Rorug06G0032300
rosa_samantha	Rh5AG493700 Rh5BG515200 Rh5CG539000 Rh5DG527700 Rh6AG153700 Rh6CG149400 Rh6DG137800
rosa_wichuraiana	Rw5G045800 Rw6G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	826
AccIII	TCCGGA	1 cut(s)	1014
AciI	CCGC	2 cut(s)	333, 398
AclWI	GGATC	3 cut(s)	147, 973, 986
AcsI	RAATTY	2 cut(s)	380, 497
AcuI	CTGAAG	3 cut(s)	88, 738, 1160
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	4 cut(s)	56, 177, 440, 840
AfiI	CCNNNNNNNGG	1 cut(s)	965
AgsI	TTSAA	6 cut(s)	34, 221, 238, 366, 496, 998
AluBI	AGCT	6 cut(s)	241, 607, 743, 833, 882, 1048
AluI	AGCT	6 cut(s)	241, 607, 743, 833, 882, 1048
Alw26I	GTCTC	3 cut(s)	398, 610, 910
AlwI	GGATC	3 cut(s)	147, 973, 986
Aor13HI	TCCGGA	1 cut(s)	1014
AoxI	GGCC	2 cut(s)	775, 1171
ApeKI	GCWGC	5 cut(s)	302, 740, 848, 1045, 1203
ApoI	RAATTY	2 cut(s)	380, 497
Asp700I	GAANNNNTTC	1 cut(s)	1022
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	2 cut(s)	452, 925
AsuHPI	GGTGA	2 cut(s)	334, 868
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	978
BbvI	GCAGC	5 cut(s)	289, 752, 860, 1057, 1190
BccI	CCATC	8 cut(s)	137, 187, 505, 664, 706, 958, 1062, 1134
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciVI	GTATCC	1 cut(s)	964
BcnI	CCSGG	2 cut(s)	452, 925
BcoDI	GTCTC	3 cut(s)	398, 610, 910
BfaI	CTAG	2 cut(s)	81, 830
BfuAI	ACCTGC	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	964
BisI	GCNGC	5 cut(s)	303, 741, 849, 1046, 1204
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	5 cut(s)	304, 742, 850, 1047, 1205
Bme1390I	CCNGG	2 cut(s)	452, 925
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	693, 980
BmrFI	CCNGG	2 cut(s)	452, 925
BmrI	ACTGGG	2 cut(s)	396, 554
BmsI	GCATC	2 cut(s)	922, 1068
BmuI	ACTGGG	2 cut(s)	396, 554
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	452, 925
BsaAI	YACGTR	1 cut(s)	842
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	162, 450, 637
BsaWI	WCCGGW	1 cut(s)	1014
BsaXI	ACNNNNNCTCC	4 cut(s)	855, 885, 903, 933
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse1I	ACTGG	3 cut(s)	391, 549, 793
BseAI	TCCGGA	1 cut(s)	1014
BseDI	CCNNGG	3 cut(s)	162, 450, 637
BseGI	GGATG	9 cut(s)	148, 483, 516, 675, 994, 1011, 1059, 1122, 1126
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseMII	CTCAG	5 cut(s)	281, 420, 693, 725, 921
BseNI	ACTGG	3 cut(s)	391, 549, 793
BseRI	GAGGAG	2 cut(s)	110, 704
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	5 cut(s)	289, 752, 860, 1057, 1190
BseYI	CCCAGC	2 cut(s)	644, 935
BsgI	GTGCAG	1 cut(s)	1064
BshFI	GGCC	2 cut(s)	777, 1173
BsiSI	CCGG	4 cut(s)	452, 924, 1015, 1130
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmAI	GTCTC	3 cut(s)	398, 610, 910
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	777, 1173
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	1014
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	152, 353, 978, 1139
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	2 cut(s)	333, 398
BspANI	GGCC	2 cut(s)	777, 1173
BspCNI	CTCAG	5 cut(s)	280, 419, 694, 724, 920
BspEI	TCCGGA	1 cut(s)	1014
BspLI	GGNNCC	2 cut(s)	693, 980
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	147, 973, 986
BspTNI	GGTCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	391, 549, 793
BssECI	CCNNGG	3 cut(s)	162, 450, 637
BssMI	GATC	4 cut(s)	152, 353, 978, 1139
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	162, 637
Bst4CI	ACNGT	3 cut(s)	202, 734, 1042
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	2 cut(s)	942, 1171
BstDEI	CTNAG	5 cut(s)	267, 406, 702, 711, 907
BstF5I	GGATG	9 cut(s)	148, 483, 516, 675, 994, 1011, 1059, 1122, 1126
BstKTI	GATC	4 cut(s)	155, 356, 981, 1142
BstMAI	GTCTC	3 cut(s)	398, 610, 910
BstMBI	GATC	4 cut(s)	152, 353, 978, 1139
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 641, 920, 941, 1170
BstNSI	RCATGY	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	450, 923
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	289, 752, 860, 1057, 1190
BstX2I	RGATCY	1 cut(s)	978
BstYI	RGATCY	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	777, 1173
BtgZI	GCGATG	1 cut(s)	1040
BtsCI	GGATG	9 cut(s)	148, 483, 516, 675, 994, 1011, 1059, 1122, 1126
BtsIMutI	CAGTG	2 cut(s)	198, 542
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	2 cut(s)	942, 1171
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	55, 176, 439, 839
CviAII	CATG	6 cut(s)	263, 306, 805, 941, 975, 1165
CviQI	GTAC	4 cut(s)	55, 176, 439, 839
DdeI	CTNAG	5 cut(s)	267, 406, 702, 711, 907
DpnI	GATC	4 cut(s)	154, 355, 980, 1141
DpnII	GATC	4 cut(s)	152, 353, 978, 1139
Eco130I	CCWWGG	2 cut(s)	162, 637
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	1194
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	3 cut(s)	88, 738, 1160
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	1194
EcoT14I	CCWWGG	2 cut(s)	162, 637
ErhI	CCWWGG	2 cut(s)	162, 637
FaeI	CATG	6 cut(s)	266, 309, 808, 944, 978, 1168
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	6 cut(s)	262, 305, 804, 940, 974, 1164
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	303, 741, 849, 1046, 1204
FokI	GGATG	9 cut(s)	155, 490, 523, 682, 998, 1001, 1046, 1109, 1113
Fsp4HI	GCNGC	5 cut(s)	303, 741, 849, 1046, 1204
FspBI	CTAG	2 cut(s)	81, 830
GluI	GCNGC	5 cut(s)	303, 741, 849, 1046, 1204
GsaI	CCCAGC	2 cut(s)	648, 939
HaeIII	GGCC	2 cut(s)	777, 1173
HapII	CCGG	4 cut(s)	452, 924, 1015, 1130
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	6 cut(s)	266, 309, 808, 944, 978, 1168
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HindIII	AAGCTT	2 cut(s)	239, 880
HinfI	GANTC	6 cut(s)	10, 98, 123, 618, 625, 824
HpaII	CCGG	4 cut(s)	452, 924, 1015, 1130
HphI	GGTGA	2 cut(s)	334, 868
Hpy166II	GTNNAC	2 cut(s)	198, 1107
Hpy188I	TCNGA	6 cut(s)	9, 90, 107, 270, 409, 703
Hpy188III	TCNNGA	4 cut(s)	622, 909, 1015, 1027
Hpy8I	GTNNAC	2 cut(s)	198, 1107
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	112, 531, 1184
HpyCH4III	ACNGT	3 cut(s)	202, 734, 1042
HpyCH4IV	ACGT	1 cut(s)	841
HpyCH4V	TGCA	6 cut(s)	305, 521, 740, 1045, 1067, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 641, 920, 941, 1170
HpyF3I	CTNAG	5 cut(s)	267, 406, 702, 711, 907
HpySE526I	ACGT	1 cut(s)	841
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	266, 309, 808, 944, 978, 1168
Kpn2I	TCCGGA	1 cut(s)	1014
Kzo9I	GATC	4 cut(s)	152, 353, 978, 1139
LmnI	GCTCC	3 cut(s)	611, 691, 911
Lsp1109I	GCAGC	5 cut(s)	289, 752, 860, 1057, 1190
LweI	GCATC	2 cut(s)	922, 1068
MaeI	CTAG	2 cut(s)	81, 830
MaeII	ACGT	1 cut(s)	841
MaeIII	GTNAC	4 cut(s)	124, 167, 895, 1180
MalI	GATC	4 cut(s)	154, 355, 980, 1141
MboI	GATC	4 cut(s)	152, 353, 978, 1139
MboII	GAAGA	3 cut(s)	46, 572, 1015
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	3 cut(s)	380, 497, 657
MlyI	GAGTC	5 cut(s)	19, 107, 132, 612, 619
MmeI	TCCRAC	1 cut(s)	871
MnlI	CCTC	9 cut(s)	88, 223, 248, 270, 406, 411, 467, 682, 979
MroI	TCCGGA	1 cut(s)	1014
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	2 cut(s)	656, 675
MspI	CCGG	4 cut(s)	452, 924, 1015, 1130
MspR9I	CCNGG	2 cut(s)	452, 925
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	144, 641, 920, 941, 1170
NciI	CCSGG	2 cut(s)	452, 925
NdeII	GATC	4 cut(s)	152, 353, 978, 1139
NlaIII	CATG	6 cut(s)	266, 309, 808, 944, 978, 1168
NlaIV	GGNNCC	2 cut(s)	693, 980
NmuCI	GTSAC	2 cut(s)	124, 1180
NspI	RCATGY	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	944
PaqCI	CACCTGC	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	1 cut(s)	824
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	304, 742, 850, 1047, 1205
PleI	GAGTC	5 cut(s)	18, 106, 131, 612, 619
PpsI	GAGTC	5 cut(s)	18, 106, 131, 612, 619
Ppu21I	YACGTR	1 cut(s)	842
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
PspFI	CCCAGC	2 cut(s)	644, 935
PspN4I	GGNNCC	2 cut(s)	693, 980
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	978
PsyI	GACNNNGTC	1 cut(s)	76
RsaI	GTAC	4 cut(s)	56, 177, 440, 840
RsaNI	GTAC	4 cut(s)	55, 176, 439, 839
SaqAI	TTAA	2 cut(s)	656, 675
SatI	GCNGC	5 cut(s)	303, 741, 849, 1046, 1204
Sau3AI	GATC	4 cut(s)	152, 353, 978, 1139
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	5 cut(s)	19, 107, 132, 612, 619
ScrFI	CCNGG	2 cut(s)	452, 925
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	922, 1068
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	3 cut(s)	380, 497, 657
SsiI	CCGC	2 cut(s)	333, 398
SspMI	CTAG	2 cut(s)	81, 830
StyD4I	CCNGG	2 cut(s)	450, 923
StyI	CCWWGG	2 cut(s)	162, 637
TaaI	ACNGT	3 cut(s)	202, 734, 1042
TaiI	ACGT	1 cut(s)	844
TaqI	TCGA	6 cut(s)	13, 151, 472, 623, 1026, 1138
TasI	AATT	3 cut(s)	380, 497, 657
TatI	WGTACW	2 cut(s)	54, 438
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	2 cut(s)	656, 675
Tru9I	TTAA	2 cut(s)	656, 675
TscAI	CASTG	2 cut(s)	205, 549
TseFI	GTSAC	2 cut(s)	124, 1180
TseI	GCWGC	5 cut(s)	302, 740, 848, 1045, 1203
Tsp45I	GTSAC	2 cut(s)	124, 1180
TspDTI	ATGAA	1 cut(s)	1016
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	205, 549
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	380, 497
XceI	RCATGY	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	2 cut(s)	81, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.