Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001655

Physical Location & Seq

Genomic Coordinates Reverse (-)

21333972 .. 21337197

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTTTCGGAGTCAAGTGGTAGGGTTGTTTTTGAAGAACAATGGCAAGGCTCTGTACAATATCAGAGGAACGATGTCGTCTAGGGTTCTGAACAAGGAGTCCTTCAGATTACTCTCAACGGGAGTCACAAGGAAATGCTTGGATTGCTTTCGATCCTTGCCCAAGGGTAACTATGTACCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATTCAAAATAAGGAGGGATTGAAGCTTCTTGTAAATGGAGGGCCTCATGCTCAGAAAATGGTTGGCATTTGGCTTTTTGGCTCTGCTGCATGGGTTTTTAGTATGGTGATACTTGGTGGTATTACACGACTTACACGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGTCTCCCGCCTCTCTCAGATGAGGATTGGCTGCTTGAGTTTGAGAAGTACAAGCAGTCCCCTGAGTATAAACGTGTAAATCGAGGGATGAGTATTGACGATTTCAAATTTATCTATTGGATGGAATATGCACATCGTATGTGGGGAAGGGCACTGGGTATTATGTTTGCCTTGCCATTCTCATATTTTCTTCGTAAGGGGTATATTACCTTACAGCTTGGAGCGAGACTCTCGACTCTTTTTGCCCTTGGTGCTGGGCAGGGTTTAATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCACCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGTCTTGCAGCTCATCTTACTTCAGCCTTTGCTATATATTGTGGCCTTTTATGGACTGGTCTTTCTGTTGTCATGCCCGAACCACCTGCTGAATCTCTAGCTTGGGTACGTGGGGCAGCAAAGGTGAAGCGACTTGCTCTCCCTGGGCATGCCTATAATACTTTTCCAAAGATGGGGGACACATGGATCCCAGAGGATGTGTTTGAAATGAAGCCACTCATCCGAAACTTCTTCGAGAATACATCTACTGTGCAGCTTGACCATCGCATCCTTGCAACTGCAACTTTGTTCTCAATCGGTGCTTTGTGGTGGTCAACAAGGAAGTTTGACATCCATCCTGCAGTTCGATCTTTGATTGGAAGTGCTGTTGGCATGGCTGGCCTTCAGGTCACTCTGGGGATATCTACACTGCTGTCCTATGTCCCTGTGGAGCTTGGCACAGCGCATCAGGCCGGGGCTTTGACTCTCTTGACACTAATGATCCTTCTCAATCACACCTTGCGTAGGCCATCGGCATCCCTTCTCAAATCACTACCTCAAGTTGCAAAGACAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

430

Amino Acids

47.75

Weight (kDa)

9.98

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56090
fragaria_vesca	FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_3g41910
malus_domestica	MD02G1271400.v1.1 MD07G1040600.v1.1
prunus_persica	Prupe.4G230100_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1
pyrus_communis	pycom02g23200
rosa_chinensis	RchiOBHm_Chr5g0075121 RchiOBHm_Chr6g0267391
rosa_laevigata	RLG00000014008 RLG00000014012 RLG00000036531
rosa_multiflora	Rmu_sc0000746.1_g000001 Rmu_ssc0000217.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006500 Rroxscaffold_7G00200820
rosa_rugosa	Rorug05G0436400 Rorug05G0436500 Rorug06G0032200 Rorug06G0032300 Rorug06G0032300
rosa_samantha	Rh5AG493700 Rh5BG515200 Rh5CG539000 Rh5DG527700 Rh6AG153700 Rh6CG149400 Rh6DG137800
rosa_wichuraiana	Rw5G045800 Rw6G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	826
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	4 cut(s)	147, 913, 926, 1207
AcsI	RAATTY	2 cut(s)	380, 497
AcuI	CTGAAG	3 cut(s)	88, 738, 1100
AfaI	GTAC	4 cut(s)	56, 177, 440, 840
AfiI	CCNNNNNNNGG	2 cut(s)	905, 1236
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	34, 221, 238, 366, 496, 938
AjnI	CCWGG	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	83, 115
AluBI	AGCT	6 cut(s)	241, 607, 743, 833, 988, 1165
AluI	AGCT	6 cut(s)	241, 607, 743, 833, 988, 1165
Alw26I	GTCTC	2 cut(s)	398, 610
AlwI	GGATC	4 cut(s)	147, 913, 926, 1207
AoxI	GGCC	5 cut(s)	257, 775, 1111, 1182, 1238
ApeKI	GCWGC	5 cut(s)	302, 421, 740, 848, 985
ApoI	RAATTY	2 cut(s)	380, 497
AspLEI	GCGC	1 cut(s)	1177
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	1186
AsuHPI	GGTGA	2 cut(s)	334, 868
BaeGI	GKGCMC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	918
BbvI	GCAGC	5 cut(s)	289, 408, 752, 860, 997
BccI	CCATC	8 cut(s)	187, 505, 664, 706, 898, 1002, 1074, 1249
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	1 cut(s)	876
BcnI	CCSGG	1 cut(s)	1186
BcoDI	GTCTC	2 cut(s)	398, 610
BfaI	CTAG	3 cut(s)	81, 830, 1288
BfmI	CTRYAG	2 cut(s)	210, 1071
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	5 cut(s)	303, 422, 741, 849, 986
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	5 cut(s)	304, 423, 742, 850, 987
Bme1390I	CCNGG	2 cut(s)	876, 1186
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	693, 920
BmrFI	CCNGG	2 cut(s)	876, 1186
BmrI	ACTGGG	2 cut(s)	396, 554
BmsI	GCATC	3 cut(s)	1008, 1186, 1256
BmuI	ACTGGG	2 cut(s)	396, 554
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	446, 1254
BpuMI	CCSGG	1 cut(s)	1186
BsaAI	YACGTR	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	5 cut(s)	162, 637, 874, 875, 1185
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	905, 1236
Bse1I	ACTGG	3 cut(s)	391, 549, 793
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	5 cut(s)	162, 637, 874, 875, 1185
BseGI	GGATG	9 cut(s)	483, 516, 675, 934, 951, 999, 1062, 1066, 1247
BseLI	CCNNNNNNNGG	2 cut(s)	905, 1236
BseMII	CTCAG	5 cut(s)	281, 420, 444, 693, 725
BseNI	ACTGG	3 cut(s)	391, 549, 793
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	5 cut(s)	289, 408, 752, 860, 997
BseYI	CCCAGC	1 cut(s)	644
BsgI	GTGCAG	1 cut(s)	1004
BshFI	GGCC	5 cut(s)	259, 777, 1113, 1184, 1240
BsiSI	CCGG	1 cut(s)	1185
BslFI	GGGAC	3 cut(s)	433, 923, 1139
BslI	CCNNNNNNNGG	2 cut(s)	905, 1236
BsmAI	GTCTC	2 cut(s)	398, 610
BsmFI	GGGAC	3 cut(s)	433, 923, 1139
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	5 cut(s)	259, 777, 1113, 1184, 1240
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	152, 353, 918, 1079, 1212
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	5 cut(s)	259, 777, 1113, 1184, 1240
BspCNI	CTCAG	5 cut(s)	280, 419, 445, 694, 724
BspLI	GGNNCC	2 cut(s)	693, 920
BspMAI	CTGCAG	1 cut(s)	1075
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	4 cut(s)	147, 913, 926, 1207
BspTNI	GGTCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	391, 549, 793
BssECI	CCNNGG	5 cut(s)	162, 637, 874, 875, 1185
BssMI	GATC	5 cut(s)	152, 353, 918, 1079, 1212
BssT1I	CCWWGG	2 cut(s)	162, 637
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	3 cut(s)	202, 734, 982
BstAUI	TGTACA	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	2 cut(s)	882, 1111
BstDEI	CTNAG	5 cut(s)	267, 406, 453, 702, 711
BstENI	CCTNNNNNAGG	1 cut(s)	1234
BstF5I	GGATG	9 cut(s)	483, 516, 675, 934, 951, 999, 1062, 1066, 1247
BstHHI	GCGC	1 cut(s)	1177
BstKTI	GATC	5 cut(s)	155, 356, 921, 1082, 1215
BstMAI	GTCTC	2 cut(s)	398, 610
BstMBI	GATC	5 cut(s)	152, 353, 918, 1079, 1212
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 641, 1110, 1181
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	2 cut(s)	874, 1184
BstSFI	CTRYAG	2 cut(s)	210, 1071
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	289, 408, 752, 860, 997
BstX2I	RGATCY	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	918
BsuRI	GGCC	5 cut(s)	259, 777, 1113, 1184, 1240
BtgZI	GCGATG	1 cut(s)	980
BtsCI	GGATG	9 cut(s)	483, 516, 675, 934, 951, 999, 1062, 1066, 1247
BtsI	GCAGTG	1 cut(s)	1139
BtsIMutI	CAGTG	3 cut(s)	198, 542, 1139
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	2 cut(s)	882, 1111
CfoI	GCGC	1 cut(s)	1177
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	4 cut(s)	55, 176, 439, 839
CviAII	CATG	6 cut(s)	263, 306, 805, 881, 915, 1105
CviQI	GTAC	4 cut(s)	55, 176, 439, 839
DdeI	CTNAG	5 cut(s)	267, 406, 453, 702, 711
DpnI	GATC	5 cut(s)	154, 355, 920, 1081, 1214
DpnII	GATC	5 cut(s)	152, 353, 918, 1079, 1212
Eco130I	CCWWGG	2 cut(s)	162, 637
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	1134
Eco57I	CTGAAG	3 cut(s)	88, 738, 1100
EcoNI	CCTNNNNNAGG	1 cut(s)	1234
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	1134
EcoT14I	CCWWGG	2 cut(s)	162, 637
ErhI	CCWWGG	2 cut(s)	162, 637
FaeI	CATG	6 cut(s)	266, 309, 808, 884, 918, 1108
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	3 cut(s)	433, 923, 1139
FatI	CATG	6 cut(s)	262, 305, 804, 880, 914, 1104
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	303, 422, 741, 849, 986
FokI	GGATG	9 cut(s)	490, 523, 682, 938, 941, 986, 1049, 1053, 1234
Fsp4HI	GCNGC	5 cut(s)	303, 422, 741, 849, 986
FspBI	CTAG	3 cut(s)	81, 830, 1288
GlaI	GCGC	1 cut(s)	1176
GluI	GCNGC	5 cut(s)	303, 422, 741, 849, 986
GsaI	CCCAGC	1 cut(s)	648
HaeIII	GGCC	5 cut(s)	259, 777, 1113, 1184, 1240
HapII	CCGG	1 cut(s)	1185
HhaI	GCGC	1 cut(s)	1177
Hin1II	CATG	6 cut(s)	266, 309, 808, 884, 918, 1108
Hin6I	GCGC	1 cut(s)	1175
HinP1I	GCGC	1 cut(s)	1175
HincII	GTYRAC	1 cut(s)	1047
HindII	GTYRAC	1 cut(s)	1047
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	7 cut(s)	10, 98, 123, 618, 625, 824, 1195
HpaII	CCGG	1 cut(s)	1185
HphI	GGTGA	2 cut(s)	334, 868
Hpy166II	GTNNAC	2 cut(s)	198, 1047
Hpy188I	TCNGA	8 cut(s)	9, 65, 90, 107, 270, 409, 703, 956
Hpy188III	TCNNGA	3 cut(s)	622, 967, 1201
Hpy8I	GTNNAC	2 cut(s)	198, 1047
HpyAV	CCTTC	5 cut(s)	112, 531, 1124, 1226, 1262
HpyCH4III	ACNGT	3 cut(s)	202, 734, 982
HpyCH4IV	ACGT	2 cut(s)	463, 841
HpyCH4V	TGCA	8 cut(s)	305, 521, 740, 985, 1007, 1013, 1073, 1277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 641, 1110, 1181
HpyF3I	CTNAG	5 cut(s)	267, 406, 453, 702, 711
HpySE526I	ACGT	2 cut(s)	463, 841
Hsp92II	CATG	6 cut(s)	266, 309, 808, 884, 918, 1108
HspAI	GCGC	1 cut(s)	1175
Kzo9I	GATC	5 cut(s)	152, 353, 918, 1079, 1212
LmnI	GCTCC	3 cut(s)	611, 691, 1162
Lsp1109I	GCAGC	5 cut(s)	289, 408, 752, 860, 997
LweI	GCATC	3 cut(s)	1008, 1186, 1256
MaeI	CTAG	3 cut(s)	81, 830, 1288
MaeII	ACGT	2 cut(s)	463, 841
MaeIII	GTNAC	3 cut(s)	124, 167, 1120
MalI	GATC	5 cut(s)	154, 355, 920, 1081, 1214
MboI	GATC	5 cut(s)	152, 353, 918, 1079, 1212
MboII	GAAGA	3 cut(s)	46, 572, 955
MflI	RGATCY	1 cut(s)	918
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	3 cut(s)	380, 497, 657
MlyI	GAGTC	6 cut(s)	19, 107, 132, 612, 619, 1189
MseI	TTAA	2 cut(s)	656, 675
MspI	CCGG	1 cut(s)	1185
MspR9I	CCNGG	2 cut(s)	876, 1186
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	4 cut(s)	144, 641, 1110, 1181
NciI	CCSGG	1 cut(s)	1186
NdeII	GATC	5 cut(s)	152, 353, 918, 1079, 1212
NlaIII	CATG	6 cut(s)	266, 309, 808, 884, 918, 1108
NlaIV	GGNNCC	2 cut(s)	693, 920
NmuCI	GTSAC	2 cut(s)	124, 1120
NspI	RCATGY	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	884
PaqCI	CACCTGC	1 cut(s)	826
PasI	CCCWGGG	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	2 cut(s)	349, 469
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	824
PkrI	GCNGC	5 cut(s)	304, 423, 742, 850, 987
PleI	GAGTC	6 cut(s)	18, 106, 131, 612, 619, 1189
PpsI	GAGTC	6 cut(s)	18, 106, 131, 612, 619, 1189
Ppu21I	YACGTR	1 cut(s)	842
Psp6I	CCWGG	1 cut(s)	874
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	2 cut(s)	693, 920
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	918
RsaI	GTAC	4 cut(s)	56, 177, 440, 840
RsaNI	GTAC	4 cut(s)	55, 176, 439, 839
SaqAI	TTAA	2 cut(s)	656, 675
SatI	GCNGC	5 cut(s)	303, 422, 741, 849, 986
Sau3AI	GATC	5 cut(s)	152, 353, 918, 1079, 1212
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	6 cut(s)	19, 107, 132, 612, 619, 1189
ScrFI	CCNGG	2 cut(s)	876, 1186
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	1008, 1186, 1256
SfcI	CTRYAG	2 cut(s)	210, 1071
SmlI	CTYRAG	2 cut(s)	425, 1269
SmoI	CTYRAG	2 cut(s)	425, 1269
SphI	GCATGC	1 cut(s)	884
Sse9I	AATT	3 cut(s)	380, 497, 657
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	3 cut(s)	81, 830, 1288
StyD4I	CCNGG	2 cut(s)	874, 1184
StyI	CCWWGG	2 cut(s)	162, 637
TaaI	ACNGT	3 cut(s)	202, 734, 982
TaiI	ACGT	2 cut(s)	466, 844
TaqI	TCGA	5 cut(s)	151, 472, 623, 966, 1078
TasI	AATT	3 cut(s)	380, 497, 657
TatI	WGTACW	2 cut(s)	54, 438
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	2 cut(s)	656, 675
Tru9I	TTAA	2 cut(s)	656, 675
TscAI	CASTG	3 cut(s)	205, 549, 1146
TseFI	GTSAC	2 cut(s)	124, 1120
TseI	GCWGC	5 cut(s)	302, 421, 740, 848, 985
Tsp45I	GTSAC	2 cut(s)	124, 1120
TspDTI	ATGAA	1 cut(s)	956
TspRI	CASTG	3 cut(s)	205, 549, 1146
XagI	CCTNNNNNAGG	1 cut(s)	1234
XapI	RAATTY	2 cut(s)	380, 497
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	3 cut(s)	81, 830, 1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.