Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000746.1

Orthogroup ID

OG0001655

Physical Location & Seq

Genomic Coordinates Forward (+)

53 .. 1685

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000746.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgtggggaagggcattgggtattatgtttgctttgccattctcatattttcttcgtaaggggtacattaccttacaacttggactgagactttctactcttcttgcccttggtgctgggcagggtctaattggttggtggatggttaaaagtggtttagaggagccagcatctgagtatgctcagccaagagtaagcccttaccgattagcagctcaccttacttcagcctttgctatatactgtggccttttgtggactggtctttctgttgtcatgcctgaaccacctgctgaatctgtagcctgggttcatggtgctgcaaaagtgaagagacttgctcttcctgtaagtttactggttgggattactgctatctcaggagcatttgttgccgggaatgatgctggacatgcttataatacttttcccaagatgggcgacagatggatcccagaggatgtttttgacatgaagccactaatccggaacttctttgagaatacatctactgtgcagcttgaccaccgtatccttgcaactgcaactttattttcaattgtcgctttgtggtggtcaacaaggaagtttgacatacaccctgcagttcgatcgttgattggaactactgttggcatggctggccttcaggtcacactggggatatctacacttctgtcgtatgtgcctgttgagcttggcactgcacatcaagctggggcattgactctcttcacacttatgatccttctcaatcacattgtgaggaagccatcaccatcccttcttaaatctctacctcaagtagcaaagacaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko02020 ko04714 map00190 map00860 map01100 map01110 map02020 map04714

Pfam Domains

Protein Families

COX15-CtaA

Protein Analysis

273

Amino Acids

29.7

Weight (kDa)

9.75

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56090
fragaria_vesca	FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_2g10180 FvH4_3g41910
malus_domestica	MD02G1271400.v1.1 MD07G1040600.v1.1
prunus_persica	Prupe.4G230100_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1 Prupe.8G086500_v2.0.a1
pyrus_communis	pycom02g23200
rosa_chinensis	RchiOBHm_Chr5g0075121 RchiOBHm_Chr6g0267391
rosa_laevigata	RLG00000014008 RLG00000014012 RLG00000036531
rosa_multiflora	Rmu_sc0000746.1_g000001 Rmu_ssc0000217.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006500 Rroxscaffold_7G00200820
rosa_rugosa	Rorug05G0436400 Rorug05G0436500 Rorug06G0032200 Rorug06G0032300 Rorug06G0032300
rosa_samantha	Rh5AG493700 Rh5BG515200 Rh5CG539000 Rh5DG527700 Rh6AG153700 Rh6CG149400 Rh6DG137800
rosa_wichuraiana	Rw5G045800 Rw6G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	486
AclWI	GGATC	3 cut(s)	445, 458, 739
AcuI	CTGAAG	2 cut(s)	210, 632
AdeI	CACNNNGTG	1 cut(s)	763
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	215, 520, 697, 716
AluI	AGCT	4 cut(s)	215, 520, 697, 716
Alw26I	GTCTC	2 cut(s)	82, 328
AlwI	GGATC	3 cut(s)	445, 458, 739
AlwNI	CAGNNNCTG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	2 cut(s)	247, 643
ApeKI	GCWGC	3 cut(s)	212, 320, 517
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	209, 768
BaeI	ACNNNNGTAYC	2 cut(s)	514, 547
BamHI	GGATCC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	224, 307, 529
BccI	CCATC	5 cut(s)	136, 430, 441, 781, 787
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	542
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	82, 328
BfmI	CTRYAG	2 cut(s)	300, 603
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	542
BisI	GCNGC	3 cut(s)	213, 321, 518
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	214, 322, 519
Bme1390I	CCNGG	2 cut(s)	307, 397
BmiI	GGNNCC	2 cut(s)	165, 452
BmrFI	CCNGG	2 cut(s)	307, 397
BmrI	ACTGGG	1 cut(s)	668
BmsI	GCATC	2 cut(s)	179, 394
BmuI	ACTGGG	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	109, 306
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	265, 363, 663
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	109, 306
BseGI	GGATG	3 cut(s)	147, 466, 779
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	77, 165, 197, 393
BseNI	ACTGG	3 cut(s)	265, 363, 663
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	224, 307, 529
BseYI	CCCAGC	2 cut(s)	116, 716
BsgI	GTGCAG	2 cut(s)	536, 690
Bsh1285I	CGRYCG	1 cut(s)	614
BshFI	GGCC	2 cut(s)	249, 645
BsiEI	CGRYCG	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	396, 487
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	2 cut(s)	82, 328
BsnI	GGCC	2 cut(s)	249, 645
Bsp13I	TCCGGA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	450, 611, 744
Bsp1720I	GCTNAGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	249, 645
BspCNI	CTCAG	4 cut(s)	78, 166, 196, 392
BspEI	TCCGGA	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	165, 452
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	3 cut(s)	445, 458, 739
BspQI	GCTCTTC	1 cut(s)	348
BsrI	ACTGG	3 cut(s)	265, 363, 663
BssECI	CCNNGG	2 cut(s)	109, 306
BssMI	GATC	3 cut(s)	450, 611, 744
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	245, 514, 530, 631
Bst6I	CTCTTC	4 cut(s)	105, 326, 348, 737
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	168, 643
BstDEI	CTNAG	4 cut(s)	86, 174, 183, 379
BstF5I	GGATG	3 cut(s)	147, 466, 779
BstKTI	GATC	3 cut(s)	453, 614, 747
BstMAI	GTCTC	2 cut(s)	82, 328
BstMBI	GATC	3 cut(s)	450, 611, 744
BstMCI	CGRYCG	1 cut(s)	614
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 392, 413, 642, 694, 713
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	305, 395
BstSFI	CTRYAG	2 cut(s)	300, 603
BstV1I	GCAGC	3 cut(s)	224, 307, 529
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	249, 645
BtsCI	GGATG	3 cut(s)	147, 466, 779
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	656, 702
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	168, 643
CaiI	CAGNNNCTG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	5 cut(s)	277, 314, 413, 472, 637
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	4 cut(s)	86, 174, 183, 379
DpnI	GATC	3 cut(s)	452, 613, 746
DpnII	GATC	3 cut(s)	450, 611, 744
DraIII	CACNNNGTG	1 cut(s)	763
Eam1104I	CTCTTC	4 cut(s)	105, 326, 348, 737
EarI	CTCTTC	4 cut(s)	105, 326, 348, 737
Eco130I	CCWWGG	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	666
Eco57I	CTGAAG	2 cut(s)	210, 632
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	280, 317, 416, 475, 640
FatI	CATG	5 cut(s)	276, 313, 412, 471, 636
Fnu4HI	GCNGC	3 cut(s)	213, 321, 518
FokI	GGATG	3 cut(s)	154, 473, 766
Fsp4HI	GCNGC	3 cut(s)	213, 321, 518
GluI	GCNGC	3 cut(s)	213, 321, 518
GsaI	CCCAGC	2 cut(s)	120, 720
HaeIII	GGCC	2 cut(s)	249, 645
HapII	CCGG	2 cut(s)	396, 487
Hin1II	CATG	5 cut(s)	280, 317, 416, 475, 640
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	2 cut(s)	296, 727
HpaII	CCGG	2 cut(s)	396, 487
HphI	GGTGA	2 cut(s)	209, 768
Hpy166II	GTNNAC	3 cut(s)	258, 356, 579
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	381, 487
Hpy8I	GTNNAC	3 cut(s)	258, 356, 579
HpyAV	CCTTC	4 cut(s)	3, 656, 758, 794
HpyCH4III	ACNGT	4 cut(s)	245, 514, 530, 631
HpyCH4V	TGCA	6 cut(s)	323, 517, 539, 545, 605, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 392, 413, 642, 694, 713
HpyF3I	CTNAG	4 cut(s)	86, 174, 183, 379
Hsp92II	CATG	5 cut(s)	280, 317, 416, 475, 640
Kpn2I	TCCGGA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	450, 611, 744
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	163, 383
Lsp1109I	GCAGC	3 cut(s)	224, 307, 529
LweI	GCATC	2 cut(s)	179, 394
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	452, 613, 746
MboI	GATC	3 cut(s)	450, 611, 744
MboII	GAAGA	5 cut(s)	44, 92, 335, 343, 724
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	2 cut(s)	129, 558
MlyI	GAGTC	1 cut(s)	721
MnlI	CCTC	4 cut(s)	154, 451, 759, 810
MroI	TCCGGA	1 cut(s)	486
MseI	TTAA	2 cut(s)	147, 789
MslI	CAYNNNNRTG	1 cut(s)	740
MspI	CCGG	2 cut(s)	396, 487
MspR9I	CCNGG	2 cut(s)	307, 397
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	6 cut(s)	113, 392, 413, 642, 694, 713
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	450, 611, 744
NlaIII	CATG	5 cut(s)	280, 317, 416, 475, 640
NlaIV	GGNNCC	2 cut(s)	165, 452
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	214, 322, 519
Ple19I	CGATCG	1 cut(s)	614
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	116, 716
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	165, 452
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	450
PvuI	CGATCG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	740
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	147, 789
SatI	GCNGC	3 cut(s)	213, 321, 518
Sau3AI	GATC	3 cut(s)	450, 611, 744
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	307, 397
SetI	ASST	9 cut(s)	74, 217, 222, 292, 522, 654, 699, 718, 802
SfaNI	GCATC	2 cut(s)	179, 394
SfcI	CTRYAG	2 cut(s)	300, 603
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	2 cut(s)	129, 558
StyD4I	CCNGG	2 cut(s)	305, 395
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	4 cut(s)	245, 514, 530, 631
TaqI	TCGA	1 cut(s)	610
TasI	AATT	2 cut(s)	129, 558
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	147, 789
Tru9I	TTAA	2 cut(s)	147, 789
TscAI	CASTG	2 cut(s)	663, 709
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	3 cut(s)	212, 320, 517
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	302, 488
TspRI	CASTG	2 cut(s)	663, 709
XceI	RCATGY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.