Rh6CG149400

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001655
Physical Location & Seq
Reverse (-)
19529660 .. 19532612
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG149400.1

Sequence Viewer

Length: 1329 bp
ATGATGCATGCATTGGACCAAAGACTAGTTCTTGGAGTTTCATTTTTCAGTGAATATTCAAGGATGAAATTTGTGTTGCTCAGTTATTTATTTATTTATTTATTTTTGGTAAAAATAAAGTGGAAATTCTTGTACCATTTTCAGGGTAGCTATGTATCATCTATAAGGAATATGTCCACTGTGGCTTCTGTAGGCATCAAGGATAAGGAGGGATTGAAGTTTCTTGTAAACGGAGGACCTCGGGCTCAGAAATTGATTGGCATTTGGCTTTTCGGCTCTGCTGCATGGGTGTTTAGCATGGTGATACTTGGAGGTGCTACACGACTAACCCGATCTGGTCTTTCAATGACTGATTGGAAATTTACTGGGGGGCTTCCGCCTCTCTCCGATGAAGACTGGTTGATTGAGTTCGAGAAGTACAAGCAATCCCCTGAATATAAGCGTGTAAATAAAGGGATGAGTATTGAAGACTTCAAATTTATCTACTGGATGGAATATGCACATCGTATGTGGGGAAGGGCATTGGGTATTATGTTCGCTTTGCCATTCTCATATTTTCTCCGTAAGGGGTACATTACCTTACAACTTGGACTGAGACTTTCTACTCTTCTTGCCCTTGGTGCTGGGCAGGGTCTAATTGGTTGGTGGATGGTTAAAAGTGGTTTAGAGGAGCCAGCATCTGAGTATGCTCAGCCAAGAGTAAGCCCTTACCGATTAGCAGCTCACCTTACTTCAGCCTTTGCTATATACTGTGGCCTTTTGTGGACTGGTCTTTCTGTTGTCATGCCTGAACCACCTGCTGAATCTGTAGCCTGGGTTCATGGTGCTGCAAAAGTGAAGAGACTTGCTCTTCCTGTAAGTTTACTGGTTGGGATTACTGCTATCTCAGGAGCATTTGTTGCCGGGAATGATGCTGGACATGCTTATAATACTTTTCCCAAGATGGGCGACAGATGGATCCCAGAGGATGTTTTTGACATGAAGCCACTAATCCGGAACTTCTTTGAGAATACATCTACTGTGCAGCTTGACCACCGTATCCTTGCAACTGCAACTTTATTTTCAATTGTCGCTTTGTGGTGGTCAACAAGGAAGTTTGACATACACCCTGCAGTTCGATCGTTGATTGGAACTACTGTTGGCATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCGTATGTGCCTGTTGAGCTTGGCACTGCACATCAAGCTGGGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Protein Analysis

442

Amino Acids

49.38

Weight (kDa)

9.73

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 88 - 418 1.7e-113 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AarI CACCTGC 1 cut(s) 805
Acc36I ACCTGC 1 cut(s) 805
AccIII TCCGGA 1 cut(s) 993
AciI CCGC 1 cut(s) 377
AclWI GGATC 3 cut(s) 952, 965, 1246
AcsI RAATTY 4 cut(s) 68, 125, 359, 476
AcuI CTGAAG 2 cut(s) 717, 1139
AdeI CACNNNGTG 1 cut(s) 1270
AfaI GTAC 3 cut(s) 134, 419, 572
AfiI CCNNNNNNNGG 2 cut(s) 142, 944
AgsI TTSAA 6 cut(s) 60, 217, 345, 467, 475, 1065
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 812
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 5 cut(s) 150, 722, 1027, 1204, 1223
AluI AGCT 5 cut(s) 150, 722, 1027, 1204, 1223
Alw26I GTCTC 2 cut(s) 589, 835
AlwI GGATC 3 cut(s) 952, 965, 1246
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 240
Aor13HI TCCGGA 1 cut(s) 993
AoxI GGCC 2 cut(s) 754, 1150
ApeKI GCWGC 4 cut(s) 281, 719, 827, 1024
ApoI RAATTY 4 cut(s) 68, 125, 359, 476
AspS9I GGNCC 2 cut(s) 16, 236
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 3 cut(s) 313, 716, 1275
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 16, 236
BaeI ACNNNNGTAYC 2 cut(s) 1021, 1054
BamHI GGATCC 1 cut(s) 957
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 399, 474
BbvI GCAGC 4 cut(s) 268, 731, 814, 1036
BccI CCATC 6 cut(s) 484, 643, 937, 948, 1288, 1294
BcgI CGANNNNNNTGC 2 cut(s) 1101, 1135
BciT130I CCWGG 1 cut(s) 814
BciVI GTATCC 1 cut(s) 1049
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 2 cut(s) 589, 835
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 3 cut(s) 189, 807, 1110
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 4 cut(s) 282, 720, 828, 1025
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 4 cut(s) 283, 721, 829, 1026
Bme1390I CCNGG 2 cut(s) 814, 904
Bme18I GGWCC 2 cut(s) 16, 236
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 16, 236
BmiI GGNNCC 2 cut(s) 672, 959
BmrFI CCNGG 2 cut(s) 814, 904
BmrI ACTGGG 2 cut(s) 375, 1175
BmsI GCATC 3 cut(s) 204, 686, 901
BmuI ACTGGG 2 cut(s) 375, 1175
BpiI GAAGAC 2 cut(s) 399, 474
BplI GAGNNNNNCTC 2 cut(s) 832, 864
Bpu1102I GCTNAGC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 1293
BpuMI CCSGG 1 cut(s) 904
BsaJI CCNNGG 3 cut(s) 239, 616, 813
BsaWI WCCGGW 1 cut(s) 993
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 944
Bse1I ACTGG 6 cut(s) 370, 401, 491, 772, 870, 1170
BseAI TCCGGA 1 cut(s) 993
BseBI CCWGG 1 cut(s) 814
BseDI CCNNGG 3 cut(s) 239, 616, 813
BseGI GGATG 6 cut(s) 69, 462, 495, 654, 973, 1286
BseLI CCNNNNNNNGG 2 cut(s) 142, 944
BseMII CTCAG 6 cut(s) 94, 260, 584, 672, 704, 900
BseNI ACTGG 6 cut(s) 370, 401, 491, 772, 870, 1170
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 4 cut(s) 268, 731, 814, 1036
BseYI CCCAGC 2 cut(s) 623, 1223
BsgI GTGCAG 2 cut(s) 1043, 1197
Bsh1285I CGRYCG 1 cut(s) 1121
BshFI GGCC 2 cut(s) 756, 1152
BsiEI CGRYCG 1 cut(s) 1121
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 903, 994
BslI CCNNNNNNNGG 2 cut(s) 142, 944
BsmAI GTCTC 2 cut(s) 589, 835
BsnI GGCC 2 cut(s) 756, 1152
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 247
Bsp13I TCCGGA 1 cut(s) 993
Bsp143I GATC 4 cut(s) 332, 957, 1118, 1251
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 1 cut(s) 377
BspANI GGCC 2 cut(s) 756, 1152
BspCNI CTCAG 6 cut(s) 93, 259, 585, 673, 703, 899
BspEI TCCGGA 1 cut(s) 993
BspLI GGNNCC 2 cut(s) 672, 959
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 3 cut(s) 952, 965, 1246
BspQI GCTCTTC 1 cut(s) 855
BsrI ACTGG 6 cut(s) 370, 401, 491, 772, 870, 1170
BssECI CCNNGG 3 cut(s) 239, 616, 813
BssMI GATC 4 cut(s) 332, 957, 1118, 1251
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 814
Bst4CI ACNGT 5 cut(s) 181, 752, 1021, 1037, 1138
Bst6I CTCTTC 4 cut(s) 612, 833, 855, 1244
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 3 cut(s) 9, 675, 1150
BstDEI CTNAG 6 cut(s) 80, 246, 593, 681, 690, 886
BstF5I GGATG 6 cut(s) 69, 462, 495, 654, 973, 1286
BstKTI GATC 4 cut(s) 335, 960, 1121, 1254
BstMAI GTCTC 2 cut(s) 589, 835
BstMBI GATC 4 cut(s) 332, 957, 1118, 1251
BstMCI CGRYCG 1 cut(s) 1121
BstMWI GCNNNNNNNGC 6 cut(s) 620, 899, 920, 1149, 1201, 1220
BstNI CCWGG 1 cut(s) 814
BstNSI RCATGY 2 cut(s) 11, 923
BstSCI CCNGG 2 cut(s) 812, 902
BstSFI CTRYAG 3 cut(s) 189, 807, 1110
BstV1I GCAGC 4 cut(s) 268, 731, 814, 1036
BstV2I GAAGAC 2 cut(s) 399, 474
BstX2I RGATCY 1 cut(s) 957
BstYI RGATCY 1 cut(s) 957
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 2 cut(s) 756, 1152
BtsCI GGATG 6 cut(s) 69, 462, 495, 654, 973, 1286
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 4 cut(s) 55, 177, 1163, 1209
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 3 cut(s) 9, 675, 1150
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 2 cut(s) 16, 236
Csp6I GTAC 3 cut(s) 133, 418, 571
CviAII CATG 8 cut(s) 8, 285, 298, 784, 821, 920, 979, 1144
CviQI GTAC 3 cut(s) 133, 418, 571
DdeI CTNAG 6 cut(s) 80, 246, 593, 681, 690, 886
DpnI GATC 4 cut(s) 334, 959, 1120, 1253
DpnII GATC 4 cut(s) 332, 957, 1118, 1251
DraIII CACNNNGTG 1 cut(s) 1270
Eam1104I CTCTTC 4 cut(s) 612, 833, 855, 1244
EarI CTCTTC 4 cut(s) 612, 833, 855, 1244
EciI GGCGGA 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 16, 236
Eco57I CTGAAG 2 cut(s) 717, 1139
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 812
EcoRV GATATC 1 cut(s) 1173
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 2 cut(s) 9, 13
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 8 cut(s) 11, 288, 301, 787, 824, 923, 982, 1147
FatI CATG 8 cut(s) 7, 284, 297, 783, 820, 919, 978, 1143
Fnu4HI GCNGC 4 cut(s) 282, 720, 828, 1025
FokI GGATG 6 cut(s) 76, 469, 502, 661, 980, 1273
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 4 cut(s) 282, 720, 828, 1025
FspBI CTAG 1 cut(s) 26
GluI GCNGC 4 cut(s) 282, 720, 828, 1025
GsaI CCCAGC 2 cut(s) 627, 1227
HaeIII GGCC 2 cut(s) 756, 1152
HapII CCGG 2 cut(s) 903, 994
Hin1II CATG 8 cut(s) 11, 288, 301, 787, 824, 923, 982, 1147
HincII GTYRAC 1 cut(s) 1086
HindII GTYRAC 1 cut(s) 1086
HinfI GANTC 2 cut(s) 803, 1234
HpaII CCGG 2 cut(s) 903, 994
HphI GGTGA 3 cut(s) 313, 716, 1275
Hpy166II GTNNAC 5 cut(s) 177, 229, 765, 863, 1086
Hpy188I TCNGA 3 cut(s) 249, 388, 682
Hpy188III TCNNGA 3 cut(s) 412, 888, 994
Hpy8I GTNNAC 5 cut(s) 177, 229, 765, 863, 1086
HpyAV CCTTC 4 cut(s) 510, 1163, 1265, 1301
HpyCH4III ACNGT 5 cut(s) 181, 752, 1021, 1037, 1138
HpyF10VI GCNNNNNNNGC 6 cut(s) 620, 899, 920, 1149, 1201, 1220
HpyF3I CTNAG 6 cut(s) 80, 246, 593, 681, 690, 886
Hsp92II CATG 8 cut(s) 11, 288, 301, 787, 824, 923, 982, 1147
Kpn2I TCCGGA 1 cut(s) 993
Kzo9I GATC 4 cut(s) 332, 957, 1118, 1251
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 2 cut(s) 670, 890
Lsp1109I GCAGC 4 cut(s) 268, 731, 814, 1036
LweI GCATC 3 cut(s) 204, 686, 901
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 1159
MalI GATC 4 cut(s) 334, 959, 1120, 1253
MboI GATC 4 cut(s) 332, 957, 1118, 1251
MboII GAAGA 6 cut(s) 404, 479, 599, 842, 850, 1231
MfeI CAATTG 1 cut(s) 1065
MflI RGATCY 1 cut(s) 957
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 7 cut(s) 68, 125, 251, 359, 476, 636, 1065
MlyI GAGTC 1 cut(s) 1228
MnlI CCTC 9 cut(s) 202, 227, 249, 305, 390, 661, 958, 1266, 1317
Mph1103I ATGCAT 2 cut(s) 9, 13
MroI TCCGGA 1 cut(s) 993
MseI TTAA 2 cut(s) 654, 1296
MslI CAYNNNNRTG 1 cut(s) 1247
MspI CCGG 2 cut(s) 903, 994
MspR9I CCNGG 2 cut(s) 814, 904
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 814
MwoI GCNNNNNNNGC 6 cut(s) 620, 899, 920, 1149, 1201, 1220
NciI CCSGG 1 cut(s) 904
NdeII GATC 4 cut(s) 332, 957, 1118, 1251
NlaIII CATG 8 cut(s) 11, 288, 301, 787, 824, 923, 982, 1147
NlaIV GGNNCC 2 cut(s) 672, 959
NmuCI GTSAC 1 cut(s) 1159
NsiI ATGCAT 2 cut(s) 9, 13
NspI RCATGY 2 cut(s) 11, 923
PaeI GCATGC 1 cut(s) 11
PaqCI CACCTGC 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PfeI GAWTC 1 cut(s) 803
PkrI GCNGC 4 cut(s) 283, 721, 829, 1026
Ple19I CGATCG 1 cut(s) 1121
PleI GAGTC 1 cut(s) 1228
PpsI GAGTC 1 cut(s) 1228
PpuMI RGGWCCY 1 cut(s) 236
PsiI TTATAA 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 812
PspFI CCCAGC 2 cut(s) 623, 1223
PspGI CCWGG 1 cut(s) 812
PspN4I GGNNCC 2 cut(s) 672, 959
PspPI GGNCC 2 cut(s) 16, 236
PspPPI RGGWCCY 1 cut(s) 236
PsrI GAACNNNNNNTAC 2 cut(s) 801, 833
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 957
PvuI CGATCG 1 cut(s) 1121
RsaI GTAC 3 cut(s) 134, 419, 572
RsaNI GTAC 3 cut(s) 133, 418, 571
RseI CAYNNNNRTG 1 cut(s) 1247
SapI GCTCTTC 1 cut(s) 855
SaqAI TTAA 2 cut(s) 654, 1296
SatI GCNGC 4 cut(s) 282, 720, 828, 1025
Sau3AI GATC 4 cut(s) 332, 957, 1118, 1251
Sau96I GGNCC 2 cut(s) 16, 236
SchI GAGTC 1 cut(s) 1228
ScrFI CCNGG 2 cut(s) 814, 904
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 3 cut(s) 204, 686, 901
SfcI CTRYAG 3 cut(s) 189, 807, 1110
SinI GGWCC 2 cut(s) 16, 236
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 1308
SmoI CTYRAG 1 cut(s) 1308
SpeI ACTAGT 1 cut(s) 25
SphI GCATGC 1 cut(s) 11
Sse9I AATT 7 cut(s) 68, 125, 251, 359, 476, 636, 1065
SsiI CCGC 1 cut(s) 377
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 812, 902
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 5 cut(s) 181, 752, 1021, 1037, 1138
TaqI TCGA 2 cut(s) 411, 1117
TasI AATT 7 cut(s) 68, 125, 251, 359, 476, 636, 1065
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 1 cut(s) 803
Tru1I TTAA 2 cut(s) 654, 1296
Tru9I TTAA 2 cut(s) 654, 1296
TscAI CASTG 4 cut(s) 55, 184, 1170, 1216
TseFI GTSAC 1 cut(s) 1159
TseI GCWGC 4 cut(s) 281, 719, 827, 1024
Tsp45I GTSAC 1 cut(s) 1159
TspDTI ATGAA 5 cut(s) 30, 80, 405, 809, 995
TspGWI ACGGA 2 cut(s) 246, 551
TspRI CASTG 4 cut(s) 55, 184, 1170, 1216
VpaK11BI GGWCC 2 cut(s) 16, 236
XapI RAATTY 4 cut(s) 68, 125, 359, 476
XceI RCATGY 2 cut(s) 11, 923
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 2 cut(s) 9, 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.