Rorug06G0032300

Cytochrome c oxidase assembly protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
3956958 .. 3960709
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0032300.1

Sequence Viewer

Length: 1245 bp
ATGGATTACCTGTATACAACAGGAGCAGTCATAGCTTCATTGTTGAGTGTTGTTTTCTTATACACTTCTAGAGGGAAGAGGAAGAATGTCAAAGCTTCAATGAAGACTCAAAATGGGAAACTTTTGAAGAGCTCTGGAAATGGAATGTGTTTGCCGGCAAAGATGGGTGCAAGTCCTGACATTGTCATTGTTGGTGCTGGAGTTGTTGGTTCGGCACTCGCTTATACTCTTGGGAAGGATGGCCGCCAAGTGCATGTGATTGAAAGAGACTTGACTGAACCAGATAGAATTGTTGGTGAACTGCTACAACCTGGGGGATATCTGAGATTGATTGAGTTGGGCCTTGAAGATTGTGTGAATGAGATTGATGCTCAGAGAGTTTTTGGCTATGCGCTTTACAAGGATGGGAAAAGTTCCAAGCTGCCATATCCCTTGGAAAACTTCCATCCAGATGTGGCTGGCAGAAGCTTTCACCATGGCCGTTTCATTCAAAGGATGCGTGAAAAAGCTGCATCTCTTCCCAATGTAAGGTTGGAGCAAGGCACAGTGACATCGCTGCTTGAGAAAAAGGGTACTGTCAAAGGGGTCCAATACAAATCCAAAGGCAGTGATCAGGAGCTCACCGCACACGCTCCCCTGACAATAGTCTGCGATGGTTGCTATTCAAACTTGCGACGCTCTCTCTGCGATGCGAAGGTTGATATTCCTTCATGTTTTGTTGGTTTAGTTCTTGAGAATTGCCAGCTTCCATACGCAAATCATGGGCATGTGATATTAGCAGATCCTTCACCGATATTGTTTTATCCTATCAGCAGCACCGAGATTCGCTGCCTGGTTGATGTACCAGGCCAGAAAGTGCCTTCAATTTCCAGTGGTGATATGGCTCACTACTTGAAAACAAAAGTGGCACCCCAAGTTCCACTTGAGCTGCATGCCGCTTTCTTGGCTGCCATTGATAATGGAAACATAAAATCAATGCCAAACAGAAGCATGCCTGCTGCTCCTCATCCCACCCCTGGTGCCTTTCTAATGGGGGATGCAGTCAATATGCGCCATCCTTTAACTGGAGGAGGCATGACTGTGGCTCTATCGGACATTGTGGTTGTTAGGGATCTTCTAAGACCTCTGGACAATCTCAATGATGCATCAGCTCTTTGCAAATACCTCGAGTCGTTCTATACTCTTCGTAAGGTGCTCTATACAAGGTGTTCTGTGCATCTCCTGATCCAGCAAGGAAAGAAATGA

Protein Analysis

414

Amino Acids

45.02

Weight (kDa)

9.01

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 60 - 368 1.2e-16 FAD binding domain
DAO PF01266 60 - 90 2.7e-06 FAD dependent oxidoreductase
SE PF08491 210 - 399 1.1e-82 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 907, 1019
AccI GTMKAC 1 cut(s) 14
AciI CCGC 3 cut(s) 244, 624, 936
AclWI GGATC 3 cut(s) 776, 1119, 1219
AcoI YGGCCR 2 cut(s) 241, 478
AfaI GTAC 2 cut(s) 574, 843
AfiI CCNNNNNNNGG 3 cut(s) 528, 1016, 1064
AgsI TTSAA 8 cut(s) 99, 127, 263, 347, 491, 666, 864, 895
AjnI CCWGG 4 cut(s) 310, 831, 844, 1015
Alw21I GWGCWC 3 cut(s) 134, 621, 1197
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 3 cut(s) 776, 1119, 1219
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 4 cut(s) 241, 340, 478, 847
ApeKI GCWGC 8 cut(s) 421, 509, 556, 813, 828, 928, 947, 998
AspLEI GCGC 2 cut(s) 394, 1053
AspS9I GGNCC 2 cut(s) 340, 586
AsuHPI GGTGA 5 cut(s) 308, 464, 613, 780, 887
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 1 cut(s) 586
BanI GGYRCC 2 cut(s) 907, 1019
BanII GRGCYC 2 cut(s) 134, 621
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 3 cut(s) 134, 621, 1197
BbvI GCAGC 8 cut(s) 408, 496, 543, 815, 825, 915, 934, 985
BccI CCATC 6 cut(s) 157, 233, 398, 453, 647, 1062
BceAI ACGGC 1 cut(s) 465
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 4 cut(s) 312, 833, 846, 1017
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 4 cut(s) 312, 833, 846, 1017
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 340, 586
BmiI GGNNCC 3 cut(s) 587, 909, 1021
BmrFI CCNGG 4 cut(s) 312, 833, 846, 1017
BmsI GCATC 8 cut(s) 358, 486, 521, 679, 1027, 1132, 1154, 1225
BoxI GACNNNNGTC 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 2 cut(s) 219, 1086
BpuEI CTTGAG 3 cut(s) 581, 752, 944
BsaJI CCNNGG 4 cut(s) 311, 432, 475, 1015
Bsc4I CCNNNNNNNGG 3 cut(s) 528, 1016, 1064
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 870, 1069
BseBI CCWGG 4 cut(s) 312, 833, 846, 1017
BseDI CCNNGG 4 cut(s) 311, 432, 475, 1015
BseGI GGATG 7 cut(s) 244, 409, 445, 501, 1006, 1042, 1054
BseLI CCNNNNNNNGG 3 cut(s) 528, 1016, 1064
BseMII CTCAG 2 cut(s) 314, 386
BseNI ACTGG 2 cut(s) 870, 1069
BseRI GAGGAG 2 cut(s) 993, 1083
BseXI GCAGC 8 cut(s) 408, 496, 543, 815, 825, 915, 934, 985
BshFI GGCC 4 cut(s) 243, 342, 480, 849
BshNI GGYRCC 2 cut(s) 907, 1019
BsiHKAI GWGCWC 3 cut(s) 134, 621, 1197
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 528, 1016, 1064
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 4 cut(s) 243, 342, 480, 849
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 3 cut(s) 134, 621, 1197
Bsp143I GATC 4 cut(s) 610, 781, 1111, 1224
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 3 cut(s) 244, 624, 936
BspANI GGCC 4 cut(s) 243, 342, 480, 849
BspCNI CTCAG 2 cut(s) 315, 385
BspLI GGNNCC 3 cut(s) 587, 909, 1021
BspPI GGATC 3 cut(s) 776, 1119, 1219
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 907, 1019
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 870, 1069
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 4 cut(s) 311, 432, 475, 1015
BssMI GATC 4 cut(s) 610, 781, 1111, 1224
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 432, 475
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 4 cut(s) 312, 833, 846, 1017
Bst4CI ACNGT 3 cut(s) 547, 577, 1081
Bst6I CTCTTC 4 cut(s) 71, 122, 522, 1188
BstC8I GCNNGC 6 cut(s) 156, 460, 743, 933, 992, 996
BstDEI CTNAG 3 cut(s) 323, 372, 1118
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 7 cut(s) 244, 409, 445, 501, 1006, 1042, 1054
BstHHI GCGC 2 cut(s) 394, 1053
BstKTI GATC 4 cut(s) 613, 784, 1114, 1227
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 4 cut(s) 610, 781, 1111, 1224
BstMWI GCNNNNNNNGC 4 cut(s) 32, 657, 684, 944
BstNI CCWGG 4 cut(s) 312, 833, 846, 1017
BstNSI RCATGY 4 cut(s) 257, 770, 935, 994
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 4 cut(s) 310, 831, 844, 1015
BstV1I GCAGC 8 cut(s) 408, 496, 543, 815, 825, 915, 934, 985
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 781, 1111
BstYI RGATCY 2 cut(s) 781, 1111
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 243, 342, 480, 849
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 3 cut(s) 537, 666, 702
BtsCI GGATG 7 cut(s) 244, 409, 445, 501, 1006, 1042, 1054
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 552, 613, 877
Cac8I GCNNGC 6 cut(s) 156, 460, 743, 933, 992, 996
CfoI GCGC 2 cut(s) 394, 1053
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 340, 586
CseI GACGC 1 cut(s) 684
Csp6I GTAC 2 cut(s) 573, 842
CviAII CATG 8 cut(s) 254, 476, 711, 761, 767, 932, 991, 1075
CviQI GTAC 2 cut(s) 573, 842
DdeI CTNAG 3 cut(s) 323, 372, 1118
DpnI GATC 4 cut(s) 612, 783, 1113, 1226
DpnII GATC 4 cut(s) 610, 781, 1111, 1224
EaeI YGGCCR 2 cut(s) 241, 478
Eam1104I CTCTTC 4 cut(s) 71, 122, 522, 1188
EarI CTCTTC 4 cut(s) 71, 122, 522, 1188
Ecl136II GAGCTC 2 cut(s) 132, 619
Eco130I CCWWGG 2 cut(s) 432, 475
Eco24I GRGCYC 2 cut(s) 134, 621
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 586
Eco53kI GAGCTC 2 cut(s) 132, 619
Eco88I CYCGRG 1 cut(s) 1166
EcoICRI GAGCTC 2 cut(s) 132, 619
EcoRII CCWGG 4 cut(s) 310, 831, 844, 1015
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 432, 475
EcoT22I ATGCAT 1 cut(s) 1147
EcoT38I GRGCYC 2 cut(s) 134, 621
ErhI CCWWGG 2 cut(s) 432, 475
FaeI CATG 8 cut(s) 257, 479, 714, 764, 770, 935, 994, 1078
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FatI CATG 8 cut(s) 253, 475, 710, 760, 766, 931, 990, 1074
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 14
FokI GGATG 7 cut(s) 251, 416, 432, 508, 993, 1041, 1049
FriOI GRGCYC 2 cut(s) 134, 621
FspBI CTAG 1 cut(s) 69
GlaI GCGC 2 cut(s) 393, 1052
GsuI CTGGAG 2 cut(s) 219, 1086
HaeIII GGCC 4 cut(s) 243, 342, 480, 849
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 684
HhaI GCGC 2 cut(s) 394, 1053
Hin1II CATG 8 cut(s) 257, 479, 714, 764, 770, 935, 994, 1078
Hin6I GCGC 2 cut(s) 392, 1051
HinP1I GCGC 2 cut(s) 392, 1051
HindIII AAGCTT 2 cut(s) 93, 466
HinfI GANTC 3 cut(s) 106, 823, 1169
HpaII CCGG 1 cut(s) 155
HphI GGTGA 5 cut(s) 308, 464, 613, 780, 887
Hpy166II GTNNAC 2 cut(s) 15, 299
Hpy188I TCNGA 3 cut(s) 324, 375, 1093
Hpy188III TCNNGA 8 cut(s) 69, 135, 176, 449, 614, 731, 1127, 1222
Hpy8I GTNNAC 2 cut(s) 15, 299
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 5 cut(s) 229, 688, 717, 795, 870
HpyCH4III ACNGT 3 cut(s) 547, 577, 1081
HpyCH4V TGCA 8 cut(s) 170, 253, 512, 931, 1040, 1145, 1158, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 657, 684, 944
HpyF3I CTNAG 3 cut(s) 323, 372, 1118
Hsp92II CATG 8 cut(s) 257, 479, 714, 764, 770, 935, 994, 1078
HspAI GCGC 2 cut(s) 392, 1051
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 4 cut(s) 610, 781, 1111, 1224
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 5 cut(s) 23, 535, 616, 637, 1006
Lsp1109I GCAGC 8 cut(s) 408, 496, 543, 815, 825, 915, 934, 985
LweI GCATC 8 cut(s) 358, 486, 521, 679, 1027, 1132, 1154, 1225
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 547
MalI GATC 4 cut(s) 612, 783, 1113, 1226
MboI GATC 4 cut(s) 610, 781, 1111, 1224
MboII GAAGA 8 cut(s) 88, 94, 115, 139, 359, 509, 1106, 1175
MflI RGATCY 2 cut(s) 781, 1111
MhlI GDGCHC 3 cut(s) 134, 621, 1197
MluCI AATT 3 cut(s) 288, 736, 864
MlyI GAGTC 2 cut(s) 100, 1178
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 7 cut(s) 65, 72, 1014, 1061, 1064, 1134, 1175
Mph1103I ATGCAT 1 cut(s) 1147
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 1 cut(s) 1061
MslI CAYNNNNRTG 3 cut(s) 450, 765, 1079
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 4 cut(s) 312, 833, 846, 1017
MvaI CCWGG 4 cut(s) 312, 833, 846, 1017
MwoI GCNNNNNNNGC 4 cut(s) 32, 657, 684, 944
NaeI GCCGGC 1 cut(s) 156
NcoI CCATGG 1 cut(s) 475
NdeII GATC 4 cut(s) 610, 781, 1111, 1224
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 8 cut(s) 257, 479, 714, 764, 770, 935, 994, 1078
NlaIV GGNNCC 3 cut(s) 587, 909, 1021
NmuCI GTSAC 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 1147
NspI RCATGY 4 cut(s) 257, 770, 935, 994
PaeI GCATGC 2 cut(s) 935, 994
PaeR7I CTCGAG 1 cut(s) 1166
PciSI GCTCTTC 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 823
PflFI GACNNNGTC 1 cut(s) 182
PleI GAGTC 2 cut(s) 100, 1177
PpsI GAGTC 2 cut(s) 100, 1177
PshAI GACNNNNGTC 1 cut(s) 644
Psp124BI GAGCTC 2 cut(s) 134, 621
Psp6I CCWGG 4 cut(s) 310, 831, 844, 1015
PspGI CCWGG 4 cut(s) 310, 831, 844, 1015
PspN4I GGNNCC 3 cut(s) 587, 909, 1021
PspPI GGNCC 2 cut(s) 340, 586
PspXI VCTCGAGB 1 cut(s) 1166
PsuI RGATCY 2 cut(s) 781, 1111
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 2 cut(s) 574, 843
RsaNI GTAC 2 cut(s) 573, 842
RseI CAYNNNNRTG 3 cut(s) 450, 765, 1079
SacI GAGCTC 2 cut(s) 134, 621
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 1061
Sau3AI GATC 4 cut(s) 610, 781, 1111, 1224
Sau96I GGNCC 2 cut(s) 340, 586
SchI GAGTC 2 cut(s) 100, 1178
ScrFI CCNGG 4 cut(s) 312, 833, 846, 1017
SduI GDGCHC 3 cut(s) 134, 621, 1197
SfaNI GCATC 8 cut(s) 358, 486, 521, 679, 1027, 1132, 1154, 1225
Sfr274I CTCGAG 1 cut(s) 1166
SinI GGWCC 1 cut(s) 586
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 3 cut(s) 450, 765, 1079
SmlI CTYRAG 4 cut(s) 560, 731, 923, 1166
SmoI CTYRAG 4 cut(s) 560, 731, 923, 1166
SphI GCATGC 2 cut(s) 935, 994
Sse9I AATT 3 cut(s) 288, 736, 864
SsiI CCGC 3 cut(s) 244, 624, 936
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 2 cut(s) 134, 621
StyD4I CCNGG 4 cut(s) 310, 831, 844, 1015
StyI CCWWGG 2 cut(s) 432, 475
TaaI ACNGT 3 cut(s) 547, 577, 1081
TaqI TCGA 1 cut(s) 1167
TasI AATT 3 cut(s) 288, 736, 864
TauI GCSGC 2 cut(s) 246, 938
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 1 cut(s) 1061
Tru9I TTAA 1 cut(s) 1061
TscAI CASTG 3 cut(s) 552, 613, 877
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 8 cut(s) 421, 509, 556, 813, 828, 928, 947, 998
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 4 cut(s) 27, 116, 475, 699
TspRI CASTG 3 cut(s) 552, 613, 877
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 4 cut(s) 257, 770, 935, 994
XcmI CCANNNNNNNNNTGG 3 cut(s) 529, 877, 1061
XhoI CTCGAG 1 cut(s) 1166
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.