AT5G57120

Nucleolar and coiled-body phosphoprotein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008781
Physical Location & Seq
Reverse (-)
23122488 .. 23124594
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57120.2

Sequence Viewer

Length: 993 bp
ATGGGCAACGAGAGCAAAACCTCGGCTTTGGAATCGGAGCAGAAGGCTCTTCTTCTCCGTTCGGTAGCTCAATACTTGGAACGATGTGGTTTTTCCAAATGCTTCAAGAAATTGCTCTCCGAAGCTGAAATCGAGAAGAAGGAATTGAACACTAGTTTACCTGATTTAGAGGAAATTTTCAGCGAGTTTTTGAACAAGAGAGATCATGAAGCTGCAGCTAATGGAAATACCGAGGCGAATGTAGTGGAAGCTGTAGAGAATGTAAAGAAGGATAAGAAGAAGAAGAAGAACAAGGAAACAAAGGTGGAGGTAACTGAGGAAGAGAAGGTCAAAGAGACTGATGCTGTGATTGAAGATGGAGTTAAGGAGAAGAAGAAGAAGAAGGAAACTAAGGTGAAAGTAACCGAGGAGGAGAAGGTCAAAGAGACTGATGCTGTGATTGAAGATGGAGTTAAGGAGAAAAAGAAGAAGAAGAGCAAGTCGAAATCTGTTGAGGCTGATGATGATAAGGAGAAAGTTTCAAAGAAAAGGAAAAGATCAGAGCCTGAAGAGACTAAAGAAGAGACTGAGGATGATGATGAAGAATCAAAACGTAGGAAGAAGGAAGAGAATGTAGTTGAAAACGATGAGGGTGTTCAAGAGACACCTGTTAAGGAGACTGAAACTAAGGAAAACGGAAATGCTGAGAAAAGTGAGACAAAGTCAACAAATCAGAAGTCAGGAAAAGGGCTTTCTAACTCAAAAGAGCCGAAGAAACCGTTTCAGAGGGTGAACGTTGACGAAATTGTGTACACTGAGAATAGCAACTCGTACTATTCAAAGGGTGGTGCTGAAATTGGCTATGGTCTTAAAGCTCAAGAGGTTCTCGGGCAAGTGAGAGGAAGGGATTTCCGACATGAGAAGACGAAGAAGAAACGAGGAAGCTACAGAGGAGGATTGATCGATCAAGAGTCACATTCGACTAAGTTTAATAACTCAGACGACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

330

Amino Acids

37.58

Weight (kDa)

6.04

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 223 - 293 3e-22 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 774
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 2 cut(s) 791, 812
AgsI TTSAA 9 cut(s) 106, 148, 193, 353, 443, 522, 620, 638, 819
AhlI ACTAGT 1 cut(s) 152
AluBI AGCT 7 cut(s) 68, 125, 212, 218, 251, 854, 924
AluI AGCT 7 cut(s) 68, 125, 212, 218, 251, 854, 924
Alw26I GTCTC 7 cut(s) 329, 419, 545, 557, 635, 650, 689
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 866
ApeKI GCWGC 2 cut(s) 212, 215
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
AsuHPI GGTGA 2 cut(s) 406, 781
AvaI CYCGRG 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 908
BbvI GCAGC 2 cut(s) 199, 227
BccI CCATC 2 cut(s) 350, 440
BcoDI GTCTC 7 cut(s) 329, 419, 545, 557, 635, 650, 689
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 3 cut(s) 213, 252, 925
BisI GCNGC 2 cut(s) 213, 216
BlsI GCNGC 2 cut(s) 214, 217
BmeT110I CYCGRG 1 cut(s) 866
BmsI GCATC 2 cut(s) 331, 421
BpiI GAAGAC 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 840
Bsa29I ATCGAT 1 cut(s) 942
BsaJI CCNNGG 3 cut(s) 21, 231, 405
BseCI ATCGAT 1 cut(s) 942
BseDI CCNNGG 3 cut(s) 21, 231, 405
BseGI GGATG 1 cut(s) 577
BseMII CTCAG 5 cut(s) 306, 558, 675, 786, 990
BseRI GAGGAG 3 cut(s) 422, 425, 945
BseXI GCAGC 2 cut(s) 199, 227
BshVI ATCGAT 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 866
BsmAI GTCTC 7 cut(s) 329, 419, 545, 557, 635, 650, 689
BsoBI CYCGRG 1 cut(s) 866
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 4 cut(s) 202, 536, 939, 943
BspCNI CTCAG 5 cut(s) 307, 559, 676, 787, 989
BspDI ATCGAT 1 cut(s) 942
BspHI TCATGA 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 217
BspQI GCTCTTC 2 cut(s) 54, 467
BsrGI TGTACA 1 cut(s) 789
BssECI CCNNGG 3 cut(s) 21, 231, 405
BssMI GATC 4 cut(s) 202, 536, 939, 943
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 6 cut(s) 54, 315, 467, 543, 555, 600
BstAUI TGTACA 1 cut(s) 789
BstDEI CTNAG 8 cut(s) 315, 390, 567, 666, 684, 795, 963, 976
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 4 cut(s) 205, 539, 942, 946
BstMAI GTCTC 7 cut(s) 329, 419, 545, 557, 635, 650, 689
BstMBI GATC 4 cut(s) 202, 536, 939, 943
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSFI CTRYAG 3 cut(s) 213, 252, 925
BstV1I GCAGC 2 cut(s) 199, 227
BstV2I GAAGAC 1 cut(s) 908
Bsu15I ATCGAT 1 cut(s) 942
BsuTUI ATCGAT 1 cut(s) 942
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 792
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 942
Csp6I GTAC 2 cut(s) 790, 811
CviAII CATG 2 cut(s) 206, 896
CviQI GTAC 2 cut(s) 790, 811
DdeI CTNAG 8 cut(s) 315, 390, 567, 666, 684, 795, 963, 976
DpnI GATC 4 cut(s) 204, 538, 941, 945
DpnII GATC 4 cut(s) 202, 536, 939, 943
Eam1104I CTCTTC 6 cut(s) 54, 315, 467, 543, 555, 600
EarI CTCTTC 6 cut(s) 54, 315, 467, 543, 555, 600
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 866
FaeI CATG 2 cut(s) 209, 899
FaiI YATR 3 cut(s) 207, 843, 897
FatI CATG 2 cut(s) 205, 895
Fnu4HI GCNGC 2 cut(s) 213, 216
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 2 cut(s) 213, 216
FspBI CTAG 1 cut(s) 153
GluI GCNGC 2 cut(s) 213, 216
Hin1II CATG 2 cut(s) 209, 899
HincII GTYRAC 2 cut(s) 705, 778
HindII GTYRAC 2 cut(s) 705, 778
HinfI GANTC 3 cut(s) 32, 584, 950
HphI GGTGA 2 cut(s) 406, 781
Hpy166II GTNNAC 6 cut(s) 158, 705, 772, 778, 790, 792
Hpy188I TCNGA 7 cut(s) 37, 121, 541, 714, 765, 893, 979
Hpy188III TCNNGA 7 cut(s) 106, 133, 206, 638, 720, 857, 947
Hpy8I GTNNAC 6 cut(s) 158, 705, 772, 778, 790, 792
Hpy99I CGWCG 1 cut(s) 986
HpyAV CCTTC 8 cut(s) 37, 133, 262, 319, 376, 409, 595, 876
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 2 cut(s) 592, 774
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 8 cut(s) 315, 390, 567, 666, 684, 795, 963, 976
HpySE526I ACGT 2 cut(s) 592, 774
Hsp92II CATG 2 cut(s) 209, 899
Kzo9I GATC 4 cut(s) 202, 536, 939, 943
LguI GCTCTTC 2 cut(s) 54, 467
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 174, 558, 660, 705
Lsp1109I GCAGC 2 cut(s) 199, 227
LweI GCATC 2 cut(s) 331, 421
MaeI CTAG 1 cut(s) 153
MaeII ACGT 2 cut(s) 592, 774
MaeIII GTNAC 3 cut(s) 310, 400, 951
MalI GATC 4 cut(s) 204, 538, 941, 945
MboI GATC 4 cut(s) 202, 536, 939, 943
MluCI AATT 5 cut(s) 110, 143, 174, 783, 834
MlyI GAGTC 1 cut(s) 959
MmeI TCCRAC 1 cut(s) 916
MseI TTAA 5 cut(s) 363, 453, 651, 849, 969
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 4 cut(s) 202, 536, 939, 943
NlaIII CATG 2 cut(s) 209, 899
NmuCI GTSAC 1 cut(s) 951
PagI TCATGA 1 cut(s) 205
PciSI GCTCTTC 2 cut(s) 54, 467
PfeI GAWTC 2 cut(s) 32, 584
PflFI GACNNNGTC 1 cut(s) 700
PkrI GCNGC 2 cut(s) 214, 217
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
Psp1406I AACGTT 1 cut(s) 774
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 545
PsyI GACNNNGTC 1 cut(s) 700
RsaI GTAC 2 cut(s) 791, 812
RsaNI GTAC 2 cut(s) 790, 811
SapI GCTCTTC 2 cut(s) 54, 467
SaqAI TTAA 5 cut(s) 363, 453, 651, 849, 969
SatI GCNGC 2 cut(s) 213, 216
Sau3AI GATC 4 cut(s) 202, 536, 939, 943
SchI GAGTC 1 cut(s) 959
SfaNI GCATC 2 cut(s) 331, 421
SfcI CTRYAG 3 cut(s) 213, 252, 925
SmlI CTYRAG 1 cut(s) 855
SmoI CTYRAG 1 cut(s) 855
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 5 cut(s) 110, 143, 174, 783, 834
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 2 cut(s) 595, 777
TaqI TCGA 4 cut(s) 132, 482, 942, 959
TasI AATT 5 cut(s) 110, 143, 174, 783, 834
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 2 cut(s) 32, 584
Tru1I TTAA 5 cut(s) 363, 453, 651, 849, 969
Tru9I TTAA 5 cut(s) 363, 453, 651, 849, 969
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 1 cut(s) 951
TseI GCWGC 2 cut(s) 212, 215
Tsp45I GTSAC 1 cut(s) 951
TspDTI ATGAA 2 cut(s) 222, 594
TspGWI ACGGA 2 cut(s) 47, 690
TspRI CASTG 1 cut(s) 799
Tth111I GACNNNGTC 1 cut(s) 700
XapI RAATTY 1 cut(s) 174
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.