Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Reverse (-)

12747005 .. 12751700

Gene Structure 4696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCCAAGTCCCTAACAAGGACGCAGGACACTCTCAGCCCTTCCCTTCTAGCATTCAAGCCCCGCCAACTTCTACTTGCAAACCTAAACCTAGAGATGAAGCAGAGCAACCCCAATAACTCTGCCCCAACCTTAAGTCCTCACCAGAAGGGTCCTCTCCTTTACGCTGTTGCTAGGTTCCTGCAGGGCAATGGGTTCTCTAAAACCCTCAAAAAGTTTCTGTCTGAAGCTCCAATCGAGAAAAATGGGCTGAAGGACTCTTCACTGGATTTGGAAGAGCTGTACTGCAAATATTCTGAGATGTGTAATAAGGACAATGCAAGTGTTAACAGTCAGAAGGAGAATGGAAATGATCCGGCCCCGGAAAAAATTGCAAAATCTAAGGACAAGAAGAAAAACAGAAAGACTTTTGAATTACTCAATCAAGGTGATGAACAAGTCTGCACAGAAGAATTAAAGAAGCCTGAACAAGTGGAAGAGGCTGATAAGAATGGCAAGGAGAAAAAGAAAAAGAAGGGCAAGATTGTTTCTGATACTCCTGATGAACAACGTAAACTAGAGCCATTGTCTGTGGCAACTGAAGAAAGTTTAAAAGATCATACATCTGTCAAGGGAAAAGGTGTTGGCGATTCTGAGACAGAGAAGAAATCTAAGGATAAGAAGAAAAAGAAAAACAAGTCAAATGATGATTCTGTTAGTCCTAATGTTGAACAGGGTGGCGTGGAAGCAAAACAGGATGCAAATGGAACTAGTGAAACAATTGCAGATGAAAATCTAGTGGATATTAAGCCTAAAGTTAAGAAGAATAAGAAGGTAAGTTCAGGTGGTGAGGATAAGAAGGTAGTTGCCATGGGAGATGCAAGTGACAGTGTTTTGAAAAAGGAAGATTTCAAATTATCTGATGTTGAGGCTACAAATAATGAGAACAAATGCTCCAAAAAAAGGAAAAGATTGGATTCTGAAGGAAATGATTCAGAGCCTGGGAAGAGCAAAGAAGATGAAAGTGCTGAGAAGTCTTCCATGCAGAAGAGCATAAAGAAGCAGTGCAATGGTTCAACTGAGGTAACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

357

Amino Acids

39.43

Weight (kDa)

8.96

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	4 cut(s)	246, 272, 600, 981
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	18, 942
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	6 cut(s)	58, 413, 710, 877, 892, 1056
AhlI	ACTAGT	1 cut(s)	749
AjnI	CCWGG	1 cut(s)	979
AloI	GAACNNNNNNTCC	2 cut(s)	917, 949
AluBI	AGCT	2 cut(s)	230, 280
AluI	AGCT	2 cut(s)	230, 280
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	970
AspS9I	GGNCC	2 cut(s)	152, 358
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	134, 440, 839
AvaII	GGWCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	1008
BciT130I	CCWGG	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	629
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	6 cut(s)	50, 92, 174, 557, 750, 776
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	362, 981
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 358
BmiI	GGNNCC	3 cut(s)	153, 179, 360
BmrFI	CCNGG	2 cut(s)	362, 981
BmsI	GCATC	2 cut(s)	727, 847
BpiI	GAAGAC	1 cut(s)	1008
BpuMI	CCSGG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	3 cut(s)	360, 849, 980
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 942
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	196, 1054
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	3 cut(s)	360, 849, 980
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	2 cut(s)	18, 942
BseMI	GCAATG	2 cut(s)	196, 1054
BseMII	CTCAG	5 cut(s)	49, 288, 624, 999, 1050
BseNI	ACTGG	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	356, 362
BslI	CCNNNNNNNGG	2 cut(s)	18, 942
BsmAI	GTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	352, 595
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	5 cut(s)	48, 289, 625, 1000, 1051
BspLI	GGNNCC	3 cut(s)	153, 179, 360
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	3 cut(s)	270, 980, 1022
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	196, 1054
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	360, 849, 980
BssMI	GATC	2 cut(s)	352, 595
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	2 cut(s)	332, 869
Bst6I	CTCTTC	5 cut(s)	265, 270, 471, 980, 1022
BstAFI	CTTAAG	1 cut(s)	133
BstDEI	CTNAG	7 cut(s)	35, 297, 381, 633, 651, 1008, 1059
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	2 cut(s)	355, 598
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	2 cut(s)	352, 595
BstNI	CCWGG	1 cut(s)	981
BstSCI	CCNGG	2 cut(s)	360, 979
BstSFI	CTRYAG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	1008
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	3 cut(s)	263, 874, 1049
CaiI	CAGNNNCTG	1 cut(s)	980
Cfr13I	GGNCC	2 cut(s)	152, 358
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	850, 1021
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	7 cut(s)	35, 297, 381, 633, 651, 1008, 1059
DpnI	GATC	2 cut(s)	354, 597
DpnII	GATC	2 cut(s)	352, 595
DraI	TTTAAA	1 cut(s)	591
Eam1104I	CTCTTC	5 cut(s)	265, 270, 471, 980, 1022
EarI	CTCTTC	5 cut(s)	265, 270, 471, 980, 1022
Eco130I	CCWWGG	1 cut(s)	849
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	4 cut(s)	246, 272, 600, 981
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	2 cut(s)	853, 1024
FaiI	YATR	4 cut(s)	600, 851, 1022, 1034
FatI	CATG	2 cut(s)	849, 1020
FauI	CCCGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	749
FspBI	CTAG	6 cut(s)	50, 92, 174, 557, 750, 776
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	356, 362
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	853, 1024
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	5 cut(s)	257, 629, 689, 956, 971
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	356, 362
HphI	GGTGA	3 cut(s)	134, 440, 839
Hpy166II	GTNNAC	2 cut(s)	328, 554
Hpy188I	TCNGA	8 cut(s)	226, 298, 336, 532, 634, 901, 961, 976
Hpy188III	TCNNGA	2 cut(s)	238, 539
Hpy8I	GTNNAC	2 cut(s)	328, 554
HpyAV	CCTTC	9 cut(s)	51, 56, 142, 247, 331, 508, 805, 832, 956
HpyCH4III	ACNGT	2 cut(s)	332, 869
HpyCH4IV	ACGT	1 cut(s)	550
HpyF3I	CTNAG	7 cut(s)	35, 297, 381, 633, 651, 1008, 1059
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	2 cut(s)	853, 1024
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	352, 595
LguI	GCTCTTC	3 cut(s)	270, 980, 1022
LmnI	GCTCC	2 cut(s)	235, 938
LweI	GCATC	2 cut(s)	727, 847
MaeI	CTAG	6 cut(s)	50, 92, 174, 557, 750, 776
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	2 cut(s)	863, 1063
MalI	GATC	2 cut(s)	354, 597
MboI	GATC	2 cut(s)	352, 595
MfeI	CAATTG	1 cut(s)	759
MluCI	AATT	5 cut(s)	369, 413, 452, 759, 893
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	7 cut(s)	150, 165, 218, 472, 823, 901, 1054
MroXI	GAANNNNTTC	1 cut(s)	970
MseI	TTAA	7 cut(s)	134, 327, 455, 590, 786, 798, 1072
MspCI	CTTAAG	1 cut(s)	133
MspI	CCGG	2 cut(s)	356, 362
MspR9I	CCNGG	2 cut(s)	362, 981
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	981
NciI	CCSGG	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	2 cut(s)	352, 595
NlaIII	CATG	2 cut(s)	853, 1024
NlaIV	GGNNCC	3 cut(s)	153, 179, 360
NmuCI	GTSAC	1 cut(s)	863
PciSI	GCTCTTC	3 cut(s)	270, 980, 1022
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	970
PfeI	GAWTC	4 cut(s)	629, 689, 956, 971
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	3 cut(s)	153, 179, 360
PspPI	GGNCC	2 cut(s)	152, 358
PspPPI	RGGWCCY	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	980
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SapI	GCTCTTC	3 cut(s)	270, 980, 1022
SaqAI	TTAA	7 cut(s)	134, 327, 455, 590, 786, 798, 1072
Sau3AI	GATC	2 cut(s)	352, 595
Sau96I	GGNCC	2 cut(s)	152, 358
SbfI	CCTGCAGG	1 cut(s)	186
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	362, 981
SdaI	CCTGCAGG	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	727, 847
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	749
Sse8387I	CCTGCAGG	1 cut(s)	186
Sse9I	AATT	5 cut(s)	369, 413, 452, 759, 893
SsiI	CCGC	1 cut(s)	64
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	6 cut(s)	50, 92, 174, 557, 750, 776
StyD4I	CCNGG	2 cut(s)	360, 979
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	332, 869
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	369, 413, 452, 759, 893
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	4 cut(s)	629, 689, 956, 971
Tru1I	TTAA	7 cut(s)	134, 327, 455, 590, 786, 798, 1072
Tru9I	TTAA	7 cut(s)	134, 327, 455, 590, 786, 798, 1072
TscAI	CASTG	3 cut(s)	270, 874, 1049
TseFI	GTSAC	1 cut(s)	863
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	5 cut(s)	113, 447, 558, 783, 1014
TspRI	CASTG	3 cut(s)	270, 874, 1049
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	970
XspI	CTAG	6 cut(s)	50, 92, 174, 557, 750, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.