RLG00000009303

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008781
Physical Location & Seq
Forward (+)
50503753 .. 50507776
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009303

Sequence Viewer

Length: 1323 bp
ATGCCCAAGTCCCTAACAAGGTCGCAGGACACTCTCAGCCCTTCCCTTCTAGCATTCAAGCCTCGCCAACTTCTACTTGCAAACCTAAACCTAGAGATGAAGCAGAGCAACCCCAATAACTCTACCCCAACCTTAAGTCCTCACCAGAAGGGTCCTCTCCTTTACGCCGTTGCTAGGTTCCTGCAGGGCAATGGGTTCTCCAAAACCCTCAAAAAGTTTCTGTCTGAAGCTCCAATCGAGAAAAATGGGCTGAAGGACTCTTCACTGGATTTGGAAGAGATGTACTGCAAATATTCTGAGATGTGTAATAAGGAGAATACAAGTGTTAACAGTCAGAAGGAGAATGGAAATTATCCAGCCCTGGAAAAAATTGCAAAATCTAAGGACAAGAAGAAAAACAGAAAGACTTTTGAATTACTCAATCAAGGTGATGAACAAGTCTGCACAGAAGAATTAAAGAAGCCTGAACAAGTGGAAGAGGCTGATAAGAATGGCAAGGAGAAAAAGAAAAAGAAGGGCAAGATTGTTTCTGATACTCCTGATGGTGTAGGACAACGTAAACTAGAGCCATTATCTGTGGCAACTGAAGAAAGTTTAAAAGATCATACATCTGTCAAGGGAAAAGGTGTTGGCGATTCTGAGACAGAGAAGAAATCTAAGGATAAGAAAAAAAAGAAAAACAAGTCTAATGATGATTCTGTTGGTCCTAATGTTGAACAGGGTGGCGTGGAGGCAAAACAGGATGCAAATGGAACTAGTGAAACAATTGCAGATGAAAATCTAGTGGATATTAAGCCTAAAGTTAAGAAGAATAAGAAGGAAAGTTCCGGTGGTGAGGATAAGAAGGTAGTTGCCATGGGAGATGCAAGTGACAGTGTTTTGAAAAAGGAAGATTTCAAATTATCTGATGTTGAGGCTACAAATAATGAGAACAAAAGCTCCAAAAAAAGGAAAAGATTGGATTCTGAAGGAAATGATTCAGATGGGAAGAGTGAAGAAGATGAAAGTGCTGAGAAGTCTTCCATGCAGAAGAGCATAAAGAAGCAGCGCAATGGTTCAACTGAGCCAAAGACTATTAATGCATTTCAAAGGGTAAAACTGGATGAGGTGGTATTCACAGATGAGAAGCTTAAAGATAATTCTTACTGGGCGAAGGATGGTGCAGAGATTGGCTATGGTGCAAAAGCACAGGAAATTCTCGGTCAAGTCAGAGGAAGGGACTTTCGGCATGAAAAGACCAAGAAGAAGCGTGGGACATACAGAGGAGGGCAGATTGATCTGCAATCGCACTCAGTCAAGTTCAATTATTCTGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

441

Amino Acids

49.02

Weight (kDa)

9.11

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 362 - 434 2.8e-27 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 1194
AcuI CTGAAG 4 cut(s) 246, 272, 606, 987
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 18, 174, 948
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 8 cut(s) 58, 413, 716, 883, 898, 1059, 1088, 1303
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 2 cut(s) 923, 955
AluBI AGCT 3 cut(s) 230, 939, 1129
AluI AGCT 3 cut(s) 230, 939, 1129
Alw26I GTCTC 1 cut(s) 635
ApeKI GCWGC 1 cut(s) 1045
ApoI RAATTY 1 cut(s) 1194
AseI ATTAAT 1 cut(s) 1077
Asp700I GAANNNNTTC 1 cut(s) 976
AspLEI GCGC 1 cut(s) 1050
AspS9I GGNCC 2 cut(s) 152, 704
AsuHPI GGTGA 3 cut(s) 134, 440, 845
AvaII GGWCC 2 cut(s) 152, 704
BbsI GAAGAC 1 cut(s) 1011
BbvI GCAGC 1 cut(s) 1057
BccI CCATC 3 cut(s) 536, 977, 1151
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 6 cut(s) 50, 92, 174, 563, 756, 782
BfmI CTRYAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 133
BisI GCNGC 1 cut(s) 1046
BlsI GCNGC 1 cut(s) 1047
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 2 cut(s) 152, 704
BmgT120I GGNCC 2 cut(s) 152, 704
BmiI GGNNCC 2 cut(s) 153, 179
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 1156
BmsI GCATC 2 cut(s) 733, 853
BmuI ACTGGG 1 cut(s) 1156
BpiI GAAGAC 1 cut(s) 1011
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 360, 855
BsaWI WCCGGW 1 cut(s) 827
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 174, 948
Bse1I ACTGG 3 cut(s) 270, 1104, 1151
Bse3DI GCAATG 2 cut(s) 196, 1057
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 360, 855
BseGI GGATG 3 cut(s) 748, 1108, 1162
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 3 cut(s) 18, 174, 948
BseMI GCAATG 2 cut(s) 196, 1057
BseMII CTCAG 6 cut(s) 49, 288, 630, 1002, 1053, 1305
BseNI ACTGG 3 cut(s) 270, 1104, 1151
BseRI GAGGAG 1 cut(s) 1278
BseXI GCAGC 1 cut(s) 1057
BsgI GTGCAG 2 cut(s) 427, 1182
BsiSI CCGG 1 cut(s) 828
BslFI GGGAC 2 cut(s) 1232, 1267
BslI CCNNNNNNNGG 3 cut(s) 18, 174, 948
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 1232, 1267
BsmI GAATGC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 601, 1276
Bsp19I CCATGG 1 cut(s) 855
BspCNI CTCAG 6 cut(s) 48, 289, 631, 1003, 1054, 1304
BspLI GGNNCC 2 cut(s) 153, 179
BspMAI CTGCAG 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 1025
BspTI CTTAAG 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 196, 1057
BsrI ACTGG 3 cut(s) 270, 1104, 1151
BssECI CCNNGG 2 cut(s) 360, 855
BssMI GATC 2 cut(s) 601, 1276
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 332, 875
Bst6I CTCTTC 5 cut(s) 265, 270, 471, 983, 1025
BstAFI CTTAAG 1 cut(s) 133
BstDEI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1011, 1062, 1291
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 3 cut(s) 748, 1108, 1162
BstHHI GCGC 1 cut(s) 1050
BstKTI GATC 2 cut(s) 604, 1279
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 2 cut(s) 601, 1276
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 1057
BstV2I GAAGAC 1 cut(s) 1011
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 3 cut(s) 748, 1108, 1162
BtsIMutI CAGTG 2 cut(s) 263, 880
CfoI GCGC 1 cut(s) 1050
Cfr13I GGNCC 2 cut(s) 152, 704
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 856, 1024, 1229
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1011, 1062, 1291
DpnI GATC 2 cut(s) 603, 1278
DpnII GATC 2 cut(s) 601, 1276
DraI TTTAAA 1 cut(s) 597
Eam1104I CTCTTC 5 cut(s) 265, 270, 471, 983, 1025
EarI CTCTTC 5 cut(s) 265, 270, 471, 983, 1025
Eco130I CCWWGG 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 152, 704
Eco57I CTGAAG 4 cut(s) 246, 272, 606, 987
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 1084
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 3 cut(s) 859, 1027, 1232
FaiI YATR 7 cut(s) 606, 857, 1025, 1037, 1176, 1230, 1258
FaqI GGGAC 2 cut(s) 1232, 1267
FatI CATG 3 cut(s) 855, 1023, 1228
Fnu4HI GCNGC 1 cut(s) 1046
FokI GGATG 3 cut(s) 755, 1115, 1169
Fsp4HI GCNGC 1 cut(s) 1046
FspBI CTAG 6 cut(s) 50, 92, 174, 563, 756, 782
GlaI GCGC 1 cut(s) 1049
GluI GCNGC 1 cut(s) 1046
HapII CCGG 1 cut(s) 828
HhaI GCGC 1 cut(s) 1050
Hin1II CATG 3 cut(s) 859, 1027, 1232
Hin6I GCGC 1 cut(s) 1048
HinP1I GCGC 1 cut(s) 1048
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 5 cut(s) 257, 635, 695, 962, 977
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 1 cut(s) 828
HphI GGTGA 3 cut(s) 134, 440, 845
Hpy166II GTNNAC 2 cut(s) 328, 560
Hpy188III TCNNGA 2 cut(s) 238, 539
Hpy8I GTNNAC 2 cut(s) 328, 560
HpyCH4III ACNGT 2 cut(s) 332, 875
HpyCH4IV ACGT 1 cut(s) 556
HpyF3I CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1011, 1062, 1291
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 3 cut(s) 859, 1027, 1232
HspAI GCGC 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 601, 1276
LguI GCTCTTC 1 cut(s) 1025
LmnI GCTCC 2 cut(s) 235, 944
Lsp1109I GCAGC 1 cut(s) 1057
LweI GCATC 2 cut(s) 733, 853
MaeI CTAG 6 cut(s) 50, 92, 174, 563, 756, 782
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 869
MalI GATC 2 cut(s) 603, 1278
MboI GATC 2 cut(s) 601, 1276
MfeI CAATTG 1 cut(s) 765
MluCI AATT 9 cut(s) 349, 369, 413, 452, 765, 899, 1138, 1194, 1303
MlyI GAGTC 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 1084
MroXI GAANNNNTTC 1 cut(s) 976
MseI TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1077, 1131
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 1 cut(s) 362
NcoI CCATGG 1 cut(s) 855
NdeII GATC 2 cut(s) 601, 1276
NlaIII CATG 3 cut(s) 859, 1027, 1232
NlaIV GGNNCC 2 cut(s) 153, 179
NmuCI GTSAC 1 cut(s) 869
NsiI ATGCAT 1 cut(s) 1084
PciSI GCTCTTC 1 cut(s) 1025
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 976
PfeI GAWTC 4 cut(s) 635, 695, 962, 977
PkrI GCNGC 1 cut(s) 1047
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 153, 179
PspPI GGNCC 2 cut(s) 152, 704
PspPPI RGGWCCY 1 cut(s) 152
PstI CTGCAG 1 cut(s) 186
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 1025
SaqAI TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1077, 1131
SatI GCNGC 1 cut(s) 1046
Sau3AI GATC 2 cut(s) 601, 1276
Sau96I GGNCC 2 cut(s) 152, 704
SbfI CCTGCAGG 1 cut(s) 186
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 362
SdaI CCTGCAGG 1 cut(s) 186
SfaNI GCATC 2 cut(s) 733, 853
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 2 cut(s) 152, 704
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 755
Sse8387I CCTGCAGG 1 cut(s) 186
Sse9I AATT 9 cut(s) 349, 369, 413, 452, 765, 899, 1138, 1194, 1303
SspI AATATT 1 cut(s) 293
SspMI CTAG 6 cut(s) 50, 92, 174, 563, 756, 782
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 2 cut(s) 332, 875
TaiI ACGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 1190
TasI AATT 9 cut(s) 349, 369, 413, 452, 765, 899, 1138, 1194, 1303
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 4 cut(s) 635, 695, 962, 977
Tru1I TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1077, 1131
Tru9I TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1077, 1131
TscAI CASTG 2 cut(s) 270, 880
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 1 cut(s) 1045
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 5 cut(s) 113, 447, 789, 1017, 1245
TspRI CASTG 2 cut(s) 270, 880
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 152, 704
VspI ATTAAT 1 cut(s) 1077
XapI RAATTY 1 cut(s) 1194
XmnI GAANNNNTTC 1 cut(s) 976
XspI CTAG 6 cut(s) 50, 92, 174, 563, 756, 782
Zsp2I ATGCAT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.