Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003033.1

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Reverse (-)

51841 .. 55837

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003033.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atggattcacaaggaggtagagctagggatcgaggtagacctagaggtaggagtagagctcgaggtaggggcaggattccccttcttgttgaagagatattcgagaatgaggttgagacgtcgaatgttaagctgcccgttccacatgttgtggaggttgtcaatgttgcagatgctactcgtttgtcaaagttggtaagggagatttcgaggctgggagtagtctttttcaagggaagtacggatcacagatgtaataaggacaatacaagtgttaacagtcagaaggagaatggaaatgatccagccctggaaaaaattgcaaaatctaaggacaaaaagaaaaacagaaagacttttgagttactcaatcaaggtgatgaacaagtctgcacagaagaattaaagaagcctgaacaagtggaagaggctgataagaatggcaaggtgaaaaagaaaaagaagggcaagattgtttctgatactcctgatggtgtagaacaatgtaaactagagccattgtctgtggcaactgaagaaagtttaaaagatcatacatctgtcaagggaaaaggtgttggcgattctgagacagagaagaaatctaaggataagaagaaaaagaaaaacaagtcaaatgatgattctgttagtcctaatgttgaacagggtggcgtggaagcaaaacaggatgcaaacggaactagtgaaacaattgcagatgaaaatctagtggatataaagcctaaagttaagaagaataagaaggaaagttcaggtggtgaggataagaaggtagttgccatgggagatgcaagtgacagtgttttgaaaaaggaagatttcaaattatctgatgttgaggctacaaataatgagaacaaaagctccaaaaaaaggaaaagattggattctgaaggaaatgattcagagcctgggaatagcaaagaagatgaaagtgctgagaagtcttccatgcagaagagcataaagaagcagtgcaatggttcaactgagccaaagactattaatgcatttcaaagggtaaaactggatgaggtggtattcacagatgagaagcttaaagataattcttactgggcgaaggatggtgcagagattggctatggtgcaaaagcacaggaaattctcggtcaagtcagaggaagggactttcggcatgaaaagaccaagaagaagcgtgggacatacagaggagggcagattgatctgcaatcgcactcagtcaagtttaattattctgatgaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

424

Amino Acids

47.12

Weight (kDa)

9.14

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	37
AclWI	GGATC	3 cut(s)	36, 252, 296
AcsI	RAATTY	1 cut(s)	1146
AcuI	CTGAAG	2 cut(s)	555, 936
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	897
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	7 cut(s)	92, 232, 665, 832, 847, 1011, 1040
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	309, 934
AloI	GAACNNNNNNTCC	2 cut(s)	872, 904
AluBI	AGCT	5 cut(s)	23, 59, 133, 888, 1081
AluI	AGCT	5 cut(s)	23, 59, 133, 888, 1081
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	110, 584
AlwI	GGATC	3 cut(s)	36, 252, 296
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	1146
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	1 cut(s)	925
AsuHPI	GGTGA	3 cut(s)	389, 460, 794
AvaI	CYCGRG	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	485, 1103
BciT130I	CCWGG	2 cut(s)	311, 936
BcoDI	GTCTC	2 cut(s)	110, 584
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	5 cut(s)	24, 42, 512, 705, 731
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	2 cut(s)	311, 936
BmeT110I	CYCGRG	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	311, 936
BmrI	ACTGGG	1 cut(s)	1108
BmsI	GCATC	3 cut(s)	163, 682, 802
BmuI	ACTGGG	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	963
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BsaBI	GATNNNNATC	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	309, 804, 935
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse1I	ACTGG	2 cut(s)	1056, 1103
Bse3DI	GCAATG	1 cut(s)	1009
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	311, 936
BseDI	CCNNGG	3 cut(s)	309, 804, 935
BseGI	GGATG	3 cut(s)	697, 1060, 1114
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	4 cut(s)	579, 954, 1005, 1257
BseNI	ACTGG	2 cut(s)	1056, 1103
BseRI	GAGGAG	1 cut(s)	1230
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	214
BsgI	GTGCAG	2 cut(s)	376, 1134
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	1184, 1219
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	2 cut(s)	110, 584
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	1184, 1219
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	28, 244, 301, 550, 1228
Bsp19I	CCATGG	1 cut(s)	804
BspCNI	CTCAG	4 cut(s)	580, 955, 1006, 1256
BspPI	GGATC	3 cut(s)	36, 252, 296
BspQI	GCTCTTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	1009
BsrI	ACTGG	2 cut(s)	1056, 1103
BssECI	CCNNGG	3 cut(s)	309, 804, 935
BssMI	GATC	5 cut(s)	28, 244, 301, 550, 1228
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	804
Bst2UI	CCWGG	2 cut(s)	311, 936
Bst4CI	ACNGT	2 cut(s)	281, 824
Bst6I	CTCTTC	3 cut(s)	87, 420, 977
BstACI	GRCGYC	1 cut(s)	119
BstDEI	CTNAG	6 cut(s)	330, 588, 606, 963, 1014, 1243
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	3 cut(s)	697, 1060, 1114
BstKTI	GATC	5 cut(s)	31, 247, 304, 553, 1231
BstMAI	GTCTC	2 cut(s)	110, 584
BstMBI	GATC	5 cut(s)	28, 244, 301, 550, 1228
BstNI	CCWGG	2 cut(s)	311, 936
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	309, 934
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	3 cut(s)	697, 1060, 1114
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	2 cut(s)	829, 1004
CaiI	CAGNNNCTG	1 cut(s)	935
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	4 cut(s)	146, 805, 976, 1181
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	6 cut(s)	330, 588, 606, 963, 1014, 1243
DpnI	GATC	5 cut(s)	30, 246, 303, 552, 1230
DpnII	GATC	5 cut(s)	28, 244, 301, 550, 1228
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	3 cut(s)	87, 420, 977
EarI	CTCTTC	3 cut(s)	87, 420, 977
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	555, 936
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	309, 934
EcoT14I	CCWWGG	1 cut(s)	804
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	804
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	4 cut(s)	149, 808, 979, 1184
FaiI	YATR	9 cut(s)	147, 555, 740, 806, 977, 989, 1128, 1182, 1210
FaqI	GGGAC	2 cut(s)	1184, 1219
FatI	CATG	4 cut(s)	145, 804, 975, 1180
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	704, 1067, 1121
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	5 cut(s)	24, 42, 512, 705, 731
GluI	GCNGC	1 cut(s)	134
GsaI	CCCAGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	149, 808, 979, 1184
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	1079
HinfI	GANTC	6 cut(s)	5, 76, 584, 644, 911, 926
HpaI	GTTAAC	1 cut(s)	277
HphI	GGTGA	3 cut(s)	389, 460, 794
Hpy166II	GTNNAC	3 cut(s)	38, 277, 509
Hpy188I	TCNGA	8 cut(s)	285, 481, 589, 856, 916, 931, 1163, 1264
Hpy188III	TCNNGA	2 cut(s)	103, 488
Hpy8I	GTNNAC	3 cut(s)	38, 277, 509
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	8 cut(s)	92, 280, 457, 760, 787, 911, 1099, 1161
HpyCH4III	ACNGT	2 cut(s)	281, 824
HpyCH4IV	ACGT	1 cut(s)	119
HpyF3I	CTNAG	6 cut(s)	330, 588, 606, 963, 1014, 1243
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	4 cut(s)	149, 808, 979, 1184
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	28, 244, 301, 550, 1228
LguI	GCTCTTC	1 cut(s)	977
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	3 cut(s)	163, 682, 802
MaeI	CTAG	5 cut(s)	24, 42, 512, 705, 731
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	363, 818
MalI	GATC	5 cut(s)	30, 246, 303, 552, 1230
MboI	GATC	5 cut(s)	28, 244, 301, 550, 1228
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	7 cut(s)	318, 401, 714, 848, 1090, 1146, 1255
Mph1103I	ATGCAT	1 cut(s)	1036
MroXI	GAANNNNTTC	1 cut(s)	925
MseI	TTAA	8 cut(s)	129, 276, 404, 545, 753, 1029, 1083, 1254
MspR9I	CCNGG	2 cut(s)	311, 936
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	311, 936
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	5 cut(s)	28, 244, 301, 550, 1228
NlaIII	CATG	4 cut(s)	149, 808, 979, 1184
NmuCI	GTSAC	1 cut(s)	818
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	60
PciI	ACATGT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	6 cut(s)	5, 76, 584, 644, 911, 926
PkrI	GCNGC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	309, 934
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	2 cut(s)	309, 934
PspXI	VCTCGAGB	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	935
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	977
SaqAI	TTAA	8 cut(s)	129, 276, 404, 545, 753, 1029, 1083, 1254
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	5 cut(s)	28, 244, 301, 550, 1228
ScrFI	CCNGG	2 cut(s)	311, 936
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	3 cut(s)	163, 682, 802
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	7 cut(s)	318, 401, 714, 848, 1090, 1146, 1255
SspMI	CTAG	5 cut(s)	24, 42, 512, 705, 731
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	309, 934
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	2 cut(s)	281, 824
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	5 cut(s)	31, 61, 102, 122, 209
TaqII	GACCGA	1 cut(s)	1142
TasI	AATT	7 cut(s)	318, 401, 714, 848, 1090, 1146, 1255
TfiI	GAWTC	6 cut(s)	5, 76, 584, 644, 911, 926
Tru1I	TTAA	8 cut(s)	129, 276, 404, 545, 753, 1029, 1083, 1254
Tru9I	TTAA	8 cut(s)	129, 276, 404, 545, 753, 1029, 1083, 1254
TscAI	CASTG	2 cut(s)	829, 1004
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	396, 738, 969, 1197
TspGWI	ACGGA	2 cut(s)	257, 714
TspRI	CASTG	2 cut(s)	829, 1004
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	1 cut(s)	1146
XceI	RCATGY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	5 cut(s)	24, 42, 512, 705, 731
ZraI	GACGTC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.