Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Forward (+)

24939902 .. 24954669

Gene Structure 14768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1240600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGCCCAAATCCCTAACAAGCACGCAGGAGGACGCTATCAACCCTTCCCTTCTCGCATTCAAGCCTCGCCAAGTTCTGCTCGCAAACCGAGACATGAAGCACAGCAAGCCTAGTAGCTCTGCCGATGGAGTCCAAACTCTGAGTCCCGACCAGAAGGGTCAACTCCTCCGCGCCGTGGCTTGGTTCCTGGAGAGCAATGGGTTCTCCAGAACCTTGAAAAAGTTCCTTTCAGAAGCTGGAATCGAGAAAAGTGAAGTGAAGGACTCTCATTTGGATTTGGGAGAAATGCACTGCAAGTATTCTGAGATGTGTAGTGGAGGCACAAATGTCCACAACGAGGATAAAGTATTTAAGGATACCTTCCACTTGCTGGTAAAGGCCGATAAGTTATCCCAGGAGGCAAAGAAGAAGTCCAAGATAGCTTCTGGTTCTCTTGCCGATGCAGCAGAAGAACATCAATCAGAGCAATTTCCTGGTGCTACTGGCAAAAAAATCAAAGATGCTGTGCCTTTAAAGGAAAATGGTGTTGGTGATTCTGAGGTAGAGAAGAAACCAAAGGATAAGAAGAAAAAGAAGGCCAAGTCAAGTACGGATTCTGTCAGTGCTGGTGTAGAGCAGCATGGCTTGGAAGTAAAAAATGATGCAAATGAAATTTGTAAATCAATTGCTGATGACAATCCAATGGATGAGAAGAGTGTCAAATCTAAAAGTAAGAAGAAAAAGAAAGATGGTTTGGTTTCTGAAAGTTTAGGTGGTGAGAATGGGAAGGCGCTTAGTATTGGAGATATGAATGGAACTGGTTCTGGAAAAGATGATTTCAAGATATCAGAAGCGGATGCTACCGATAAGGAGAATAAATGTTCCAAAAAAAGAAAAAGATTAGTTTCTGAAGGAAATGATGCACAGCCTACTGACAACAAAGAAGATGAAGAATCCAATCGCAGAATGGTAGAGGGTTCAAAAGCATCCAAGGGAAGTGAGCAACCAGTAAATAATGATGCATCACAAGGAAAAGCTGAAAATTTTGGTGAACTAGAGAAAAGGGCCGAGAAGTCTTCGAAAAAGAAAAGCAAGAAGCAACTCAACGGTTCAGCTGAGCCAAAGACCGTTAATGCATTTCAAAGGGTAAAAGCTGATGAGGTGGAATTTGTTGATGAGAAGCTTCGAGATAATTCTTACTGGGCAAAGGTGATGGTGCGGAGATTGGCTACGGTGCAAAAGCACAAGAGATTCTTGGGCAAGTCCGAGGAAGGGATTTTCGGCACGAAAAGACCAAAAAGAAGCGAGGGTCATACACAGGAGGGCAGATTGATCAGCAATCACACTCGGTCAAGTTCAATTATTCTGATGAAGATTAACTGGAAAGTTTCCTTAAGGCACAAGTCAAGAACGGTATTCACTTGCAGAAACATCTTGCTGGACCCTACCTATTTATATTTCCAAAAAAATTCAACCAAGGGCCCATTTAGAGTTTTACAATGCAAAATTTTTGAATGTGAACTAAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

504

Amino Acids

55.89

Weight (kDa)

9.43

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	169, 833, 1198
AcsI	RAATTY	6 cut(s)	651, 1021, 1145, 1447, 1485, 1505
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	5 cut(s)	175, 180, 337, 370, 1251
AflII	CTTAAG	1 cut(s)	1372
AgsI	TTSAA	8 cut(s)	61, 217, 820, 960, 1121, 1338, 1452, 1493
AjnI	CCWGG	3 cut(s)	186, 393, 472
AjuI	GAANNNNNNNTTGG	4 cut(s)	510, 542, 716, 748
AluBI	AGCT	7 cut(s)	117, 236, 422, 1016, 1094, 1133, 1162
AluI	AGCT	7 cut(s)	117, 236, 422, 1016, 1094, 1133, 1162
Alw26I	GTCTC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	378, 576, 1044, 1459
ApaI	GGGCCC	1 cut(s)	1463
ApeKI	GCWGC	2 cut(s)	443, 616
ApoI	RAATTY	6 cut(s)	651, 1021, 1145, 1447, 1485, 1505
ArsI	GACNNNNNNTTYG	4 cut(s)	127, 159, 395, 427
Asp700I	GAANNNNTTC	2 cut(s)	221, 799
AspLEI	GCGC	2 cut(s)	173, 772
AspS9I	GGNCC	4 cut(s)	1044, 1420, 1459, 1460
AsuHPI	GGTGA	4 cut(s)	542, 767, 1040, 1201
AsuII	TTCGAA	1 cut(s)	1058
AvaII	GGWCC	1 cut(s)	1420
BaeGI	GKGCMC	1 cut(s)	1463
BanII	GRGCYC	1 cut(s)	1463
BbsI	GAAGAC	1 cut(s)	1047
BbvI	GCAGC	2 cut(s)	455, 628
BccI	CCATC	3 cut(s)	119, 722, 1186
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	3 cut(s)	188, 395, 474
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	1311
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	111, 1034
BfoI	RGCGCY	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	1372
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	444, 617
BlpI	GCTNAGC	1 cut(s)	1095
BlsI	GCNGC	2 cut(s)	445, 618
Bme1390I	CCNGG	3 cut(s)	188, 395, 474
Bme18I	GGWCC	1 cut(s)	1420
BmgT120I	GGNCC	4 cut(s)	1044, 1420, 1459, 1460
BmiI	GGNNCC	3 cut(s)	185, 1422, 1461
BmrFI	CCNGG	3 cut(s)	188, 395, 474
BmrI	ACTGGG	1 cut(s)	1189
BmsI	GCATC	8 cut(s)	430, 490, 631, 826, 889, 974, 988, 1010
BmuI	ACTGGG	1 cut(s)	1189
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	2 cut(s)	190, 209
Bpu1102I	GCTNAGC	1 cut(s)	1095
Bpu14I	TTCGAA	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	5 cut(s)	174, 393, 969, 1245, 1455
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 180, 337, 370, 1251
Bse1I	ACTGG	5 cut(s)	487, 802, 986, 1184, 1364
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	3 cut(s)	188, 395, 474
BseDI	CCNNGG	5 cut(s)	174, 393, 969, 1245, 1455
BseGI	GGATG	3 cut(s)	691, 841, 965
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	5 cut(s)	175, 180, 337, 370, 1251
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	4 cut(s)	131, 294, 528, 1086
BseNI	ACTGG	5 cut(s)	487, 802, 986, 1184, 1364
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	1463
BseXI	GCAGC	2 cut(s)	455, 628
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	4 cut(s)	380, 578, 1046, 1461
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	5 cut(s)	175, 180, 337, 370, 1251
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	4 cut(s)	380, 578, 1046, 1461
Bsp119I	TTCGAA	1 cut(s)	1058
Bsp120I	GGGCCC	1 cut(s)	1459
Bsp1286I	GDGCHC	1 cut(s)	1463
Bsp143I	GATC	1 cut(s)	1311
Bsp1720I	GCTNAGC	1 cut(s)	1095
BspACI	CCGC	3 cut(s)	169, 833, 1198
BspANI	GGCC	4 cut(s)	380, 578, 1046, 1461
BspCNI	CTCAG	4 cut(s)	132, 295, 529, 1087
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	185, 1422, 1461
BspT104I	TTCGAA	1 cut(s)	1058
BspTI	CTTAAG	1 cut(s)	1372
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	5 cut(s)	487, 802, 986, 1184, 1364
BssECI	CCNNGG	5 cut(s)	174, 393, 969, 1245, 1455
BssMI	GATC	1 cut(s)	1311
BssT1I	CCWWGG	2 cut(s)	969, 1455
Bst2UI	CCWGG	3 cut(s)	188, 395, 474
Bst4CI	ACNGT	4 cut(s)	1088, 1108, 1213, 1393
Bst6I	CTCTTC	1 cut(s)	686
BstAFI	CTTAAG	1 cut(s)	1372
BstBI	TTCGAA	1 cut(s)	1058
BstC8I	GCNNGC	3 cut(s)	23, 81, 107
BstDEI	CTNAG	5 cut(s)	140, 303, 537, 773, 1095
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	691, 841, 965
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	773
BstHHI	GCGC	2 cut(s)	173, 772
BstKTI	GATC	1 cut(s)	1314
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	1311
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 443
BstNI	CCWGG	3 cut(s)	188, 395, 474
BstSCI	CCNGG	3 cut(s)	186, 393, 472
BstSLI	GKGCMC	1 cut(s)	1463
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	455, 628
BstV2I	GAAGAC	1 cut(s)	1047
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	380, 578, 1046, 1461
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	691, 841, 965
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 607
Cac8I	GCNNGC	3 cut(s)	23, 81, 107
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	2 cut(s)	173, 772
Cfr13I	GGNCC	4 cut(s)	1044, 1420, 1459, 1460
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	2 cut(s)	94, 620
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	5 cut(s)	140, 303, 537, 773, 1095
DpnI	GATC	1 cut(s)	1313
DpnII	GATC	1 cut(s)	1311
DraI	TTTAAA	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Eco130I	CCWWGG	2 cut(s)	969, 1455
Eco24I	GRGCYC	1 cut(s)	1463
Eco32I	GATATC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	1420
Eco57I	CTGAAG	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	1459
EcoRII	CCWGG	3 cut(s)	186, 393, 472
EcoRV	GATATC	1 cut(s)	825
EcoT14I	CCWWGG	2 cut(s)	969, 1455
EcoT22I	ATGCAT	2 cut(s)	1003, 1117
EcoT38I	GRGCYC	1 cut(s)	1463
ErhI	CCWWGG	2 cut(s)	969, 1455
FaeI	CATG	2 cut(s)	97, 623
FaiI	YATR	5 cut(s)	95, 621, 788, 1293, 1435
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 1217, 1249
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	93, 619
FbaI	TGATCA	1 cut(s)	1311
Fnu4HI	GCNGC	2 cut(s)	444, 617
FokI	GGATG	3 cut(s)	698, 848, 952
FriOI	GRGCYC	1 cut(s)	1463
Fsp4HI	GCNGC	2 cut(s)	444, 617
FspBI	CTAG	2 cut(s)	111, 1034
GlaI	GCGC	2 cut(s)	172, 771
GluI	GCNGC	2 cut(s)	444, 617
GsuI	CTGGAG	2 cut(s)	190, 209
HaeII	RGCGCY	1 cut(s)	773
HaeIII	GGCC	4 cut(s)	380, 578, 1046, 1461
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	173, 772
Hin1II	CATG	2 cut(s)	97, 623
Hin6I	GCGC	2 cut(s)	171, 770
HinP1I	GCGC	2 cut(s)	171, 770
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	1160
HinfI	GANTC	8 cut(s)	129, 142, 240, 263, 533, 593, 932, 1230
HphI	GGTGA	4 cut(s)	542, 767, 1040, 1201
Hpy166II	GTNNAC	4 cut(s)	161, 331, 1031, 1499
Hpy188III	TCNNGA	7 cut(s)	146, 207, 244, 804, 820, 1166, 1386
Hpy8I	GTNNAC	4 cut(s)	161, 331, 1031, 1499
HpyAV	CCTTC	9 cut(s)	54, 59, 148, 253, 370, 568, 760, 884, 1244
HpyCH4III	ACNGT	4 cut(s)	1088, 1108, 1213, 1393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 443
HpyF3I	CTNAG	5 cut(s)	140, 303, 537, 773, 1095
Hsp92II	CATG	2 cut(s)	97, 623
HspAI	GCGC	2 cut(s)	171, 770
Ksp22I	TGATCA	1 cut(s)	1311
Kzo9I	GATC	1 cut(s)	1311
Lsp1109I	GCAGC	2 cut(s)	455, 628
LweI	GCATC	8 cut(s)	430, 490, 631, 826, 889, 974, 988, 1010
MaeI	CTAG	2 cut(s)	111, 1034
MalI	GATC	1 cut(s)	1313
MboI	GATC	1 cut(s)	1311
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	1463
MlyI	GAGTC	3 cut(s)	138, 151, 257
Mph1103I	ATGCAT	2 cut(s)	1003, 1117
MroXI	GAANNNNTTC	2 cut(s)	221, 799
MseI	TTAA	6 cut(s)	351, 512, 1110, 1356, 1373, 1510
MspA1I	CMGCKG	1 cut(s)	1094
MspCI	CTTAAG	1 cut(s)	1372
MspR9I	CCNGG	3 cut(s)	188, 395, 474
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	188, 395, 474
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	106, 443
NdeII	GATC	1 cut(s)	1311
NlaIII	CATG	2 cut(s)	97, 623
NlaIV	GGNNCC	3 cut(s)	185, 1422, 1461
NmeAIII	GCCGAG	1 cut(s)	1072
NsiI	ATGCAT	2 cut(s)	1003, 1117
NspV	TTCGAA	1 cut(s)	1058
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	2 cut(s)	221, 799
PfeI	GAWTC	5 cut(s)	240, 533, 593, 932, 1230
PflMI	CCANNNNNTGG	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	445, 618
PleI	GAGTC	3 cut(s)	137, 150, 257
PpsI	GAGTC	3 cut(s)	137, 150, 257
Psp6I	CCWGG	3 cut(s)	186, 393, 472
PspGI	CCWGG	3 cut(s)	186, 393, 472
PspN4I	GGNNCC	3 cut(s)	185, 1422, 1461
PspOMI	GGGCCC	1 cut(s)	1459
PspPI	GGNCC	4 cut(s)	1044, 1420, 1459, 1460
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
SaqAI	TTAA	6 cut(s)	351, 512, 1110, 1356, 1373, 1510
SatI	GCNGC	2 cut(s)	444, 617
Sau3AI	GATC	1 cut(s)	1311
Sau96I	GGNCC	4 cut(s)	1044, 1420, 1459, 1460
SchI	GAGTC	3 cut(s)	138, 151, 257
ScrFI	CCNGG	3 cut(s)	188, 395, 474
SduI	GDGCHC	1 cut(s)	1463
SfaNI	GCATC	8 cut(s)	430, 490, 631, 826, 889, 974, 988, 1010
SfuI	TTCGAA	1 cut(s)	1058
SinI	GGWCC	1 cut(s)	1420
SmlI	CTYRAG	1 cut(s)	1372
SmoI	CTYRAG	1 cut(s)	1372
SsiI	CCGC	3 cut(s)	169, 833, 1198
SspMI	CTAG	2 cut(s)	111, 1034
StyD4I	CCNGG	3 cut(s)	186, 393, 472
StyI	CCWWGG	2 cut(s)	969, 1455
TaaI	ACNGT	4 cut(s)	1088, 1108, 1213, 1393
TaqI	TCGA	3 cut(s)	243, 1058, 1165
TaqII	GACCGA	1 cut(s)	1317
TfiI	GAWTC	5 cut(s)	240, 533, 593, 932, 1230
Tru1I	TTAA	6 cut(s)	351, 512, 1110, 1356, 1373, 1510
Tru9I	TTAA	6 cut(s)	351, 512, 1110, 1356, 1373, 1510
TscAI	CASTG	2 cut(s)	296, 607
TseI	GCWGC	2 cut(s)	443, 616
TspDTI	ATGAA	5 cut(s)	110, 663, 803, 942, 1364
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	2 cut(s)	296, 607
Van91I	CCANNNNNTGG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	1372
VpaK11BI	GGWCC	1 cut(s)	1420
XapI	RAATTY	6 cut(s)	651, 1021, 1145, 1447, 1485, 1505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmnI	GAANNNNTTC	2 cut(s)	221, 799
XspI	CTAG	2 cut(s)	111, 1034
Zsp2I	ATGCAT	2 cut(s)	1003, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.