Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Reverse (-)

5214872 .. 5219856

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G073000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCCCAAGTCCCTAACAAGCACGCAGGACACTATCAACCCTACCCTTCTCGCCTTCAGGCCTCGCCAAGTTCAGCTCGCAAACCTAGAAGATATGAAGCACAGTAAGCCTAATATCTCCAGCGACAGCACCCAAACTCTAAGTCCCGGCCAGAAGGGTCCACTCCTCCATGCCGTGGCTCGATTCCTGGAGAGCAATGGGTTCTCCAAAACCCTGAAAAAGTTCCGGTCCGAAGCTCAAATCGAGAAAAGTGGACCGAAGGAATCTTCACTGGATTTGGAAGAAATGTACTGCAAGTTGATGTGTAATAATGGAGTCACAAATGTCAACAGCCAGAAGAAGAAAGAAGACATAAAGGAGCCTGAAAAATTGTTGGAGGAGACTGAAAAGAATTGCATGGAGAAAAAGAAAAAGAAATCTAAGGTAGCTTCTGATTCACTTGCTTCTGATTCTGAGACGGAGAAGAAACCAAAGGATAAGAAGAAAAAGAAGAACAAGTCAAGTTCTGATTCTGTTGATGCAAATGGAATTGGTAAATCAACTGCTGATGAAATTCCAGTGGATGAGAAGAGTGTCAAACCTAATGGTAAGAAGAAAAAGAAAGATGGTTTGGTTTCTGAAAGTCTAGATGGTGAGGATGTGAAGGTGCTTGGTATAGGAGATACAAATGGAACTAGTTCTACAAAAGATGATTTGAAGATATCAGATGTGGATGCTACCGGTAAGGAGAGTAAAGGGTCCAAGAAAAGAAAAAGATTAGCGTCTGAAGGAAATGATTCGCAGCCTGCTGACAACAGAGAAGATGAAGAATCCAAGCGCAGAAAGGTAGAGAGTTTAAAAGCATCCAAGGGAAGTGAGCAACCAGCAAATAGTGATGCGTCCCTAGGAAAAGCTGAAAATGCTGGTAAAGATAGTGGAGGGGAAAGTGGTCAAGTTGGTCCAGATGTGTTTCAAAAAGCTTCTGTTACGCAGCTTGATGGCCAGGCAAATGGGAACCTAGAGAAAAGTGCTGAGAAGTCTTCGATAAAGAAAAGCATGAAGAAGCAGCACAATGGTTCTGATGAGCCAACGGCTTTTAAGGCATTTCAAAGGGTAAAAGCTGAGGAGGTGGAATTCATAGACGAGAAGCTTCGGGATAATTCTTACTGGGCAAAGGTGATGGTGCAGAGATTGGCTACGGTGCAAAAGCACAGGAAGTTCTTGGGCAAGTTAGAGGAAGGGATTTTCGTCATGAAAAGACTAAGAAGAAGCGTGGGTCATACAGAGGAGGGCAGATTGATCAGCAGTCACACTCAGTCAAGTTCAATTATGATGATGAAGAATAACCGGAAACCTTTCCTGAGGAGCAAGTTTACAGAAACAATATTCGCTTGCAGAAAACCTGCGTCTTTTATATTCTGCACAAGTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

472

Amino Acids

52.08

Weight (kDa)

9.45

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1390
AccB7I	CCANNNNNTGG	1 cut(s)	175
AcoI	YGGCCR	2 cut(s)	148, 979
AcsI	RAATTY	2 cut(s)	552, 1112
AcuI	CTGAAG	2 cut(s)	40, 786
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	719
AgsI	TTSAA	5 cut(s)	697, 953, 1088, 1305, 1412
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	186, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	8 cut(s)	76, 236, 428, 893, 959, 973, 1100, 1129
AluI	AGCT	8 cut(s)	76, 236, 428, 893, 959, 973, 1100, 1129
Alw26I	GTCTC	2 cut(s)	374, 449
AoxI	GGCC	3 cut(s)	59, 148, 979
ApeKI	GCWGC	3 cut(s)	781, 970, 1045
ApoI	RAATTY	2 cut(s)	552, 1112
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AsiGI	ACCGGT	1 cut(s)	719
Asp700I	GAANNNNTTC	4 cut(s)	221, 676, 775, 1334
AspA2I	CCTAGG	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	5 cut(s)	158, 228, 254, 738, 938
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	644, 1168
AvaII	GGWCC	5 cut(s)	158, 228, 254, 738, 938
AvrII	CCTAGG	1 cut(s)	883
AxyI	CCTNAGG	1 cut(s)	1340
BalI	TGGCCA	1 cut(s)	981
BbsI	GAAGAC	2 cut(s)	354, 1011
BbvCI	CCTCAGC	1 cut(s)	1101
BbvI	GCAGC	3 cut(s)	793, 982, 1057
BccI	CCATC	4 cut(s)	599, 623, 971, 1153
BceAI	ACGGC	2 cut(s)	158, 1086
BciT130I	CCWGG	2 cut(s)	188, 983
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	374, 449
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	5 cut(s)	86, 626, 675, 884, 998
BfuAI	ACCTGC	1 cut(s)	1390
BisI	GCNGC	3 cut(s)	782, 971, 1046
BlnI	CCTAGG	1 cut(s)	883
BlsI	GCNGC	3 cut(s)	783, 972, 1047
Bme1390I	CCNGG	3 cut(s)	147, 188, 983
Bme18I	GGWCC	5 cut(s)	158, 228, 254, 738, 938
BmgT120I	GGNCC	5 cut(s)	158, 228, 254, 738, 938
BmiI	GGNNCC	4 cut(s)	159, 360, 739, 995
BmrFI	CCNGG	3 cut(s)	147, 188, 983
BmrI	ACTGGG	1 cut(s)	1156
BmsI	GCATC	4 cut(s)	508, 703, 851, 865
BmuI	ACTGGG	1 cut(s)	1156
BpiI	GAAGAC	2 cut(s)	354, 1011
BpmI	CTGGAG	2 cut(s)	103, 209
Bpu10I	CCTNAGC	1 cut(s)	1101
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	174, 846, 883
BsaWI	WCCGGW	3 cut(s)	225, 719, 1326
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	276, 557, 1151
Bse21I	CCTNAGG	1 cut(s)	1340
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	188, 983
BseDI	CCNNGG	3 cut(s)	174, 846, 883
BseGI	GGATG	4 cut(s)	568, 643, 718, 842
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	5 cut(s)	444, 1002, 1092, 1307, 1331
BseNI	ACTGG	3 cut(s)	276, 557, 1151
BseRI	GAGGAG	5 cut(s)	155, 392, 1118, 1280, 1357
BseXI	GCAGC	3 cut(s)	793, 982, 1057
BsgI	GTGCAG	2 cut(s)	1184, 1384
BshFI	GGCC	3 cut(s)	61, 150, 981
BshTI	ACCGGT	1 cut(s)	719
BsiSI	CCGG	4 cut(s)	147, 226, 720, 1327
BslFI	GGGAC	2 cut(s)	129, 865
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	374, 449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	2 cut(s)	129, 865
BsnI	GGCC	3 cut(s)	61, 150, 981
Bsp143I	GATC	1 cut(s)	1278
BspANI	GGCC	3 cut(s)	61, 150, 981
BspCNI	CTCAG	5 cut(s)	445, 1003, 1093, 1306, 1332
BspHI	TCATGA	1 cut(s)	1230
BspLI	GGNNCC	4 cut(s)	159, 360, 739, 995
BspMI	ACCTGC	1 cut(s)	1390
BsrDI	GCAATG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	3 cut(s)	276, 557, 1151
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	3 cut(s)	174, 846, 883
BssMI	GATC	1 cut(s)	1278
BssT1I	CCWWGG	2 cut(s)	846, 883
Bst2UI	CCWGG	2 cut(s)	188, 983
Bst4CI	ACNGT	2 cut(s)	104, 1180
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	23, 78, 786, 1372
BstDEI	CTNAG	8 cut(s)	140, 420, 453, 1011, 1101, 1241, 1293, 1340
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	568, 643, 718, 842
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	1 cut(s)	1281
BstMAI	GTCTC	2 cut(s)	374, 449
BstMBI	GATC	1 cut(s)	1278
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 899, 1079
BstNI	CCWGG	2 cut(s)	188, 983
BstSCI	CCNGG	3 cut(s)	145, 186, 981
BstV1I	GCAGC	3 cut(s)	793, 982, 1057
BstV2I	GAAGAC	2 cut(s)	354, 1011
BstXI	CCANNNNNNTGG	1 cut(s)	989
Bsu36I	CCTNAGG	1 cut(s)	1340
BsuRI	GGCC	3 cut(s)	61, 150, 981
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	568, 643, 718, 842
BtsIMutI	CAGTG	2 cut(s)	269, 564
BveI	ACCTGC	1 cut(s)	1390
Cac8I	GCNNGC	4 cut(s)	23, 78, 786, 1372
CciI	TCATGA	1 cut(s)	1230
CfoI	GCGC	1 cut(s)	819
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	5 cut(s)	158, 228, 254, 738, 938
CpoI	CGGWCCG	1 cut(s)	228
CseI	GACGC	3 cut(s)	750, 867, 1374
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	719
CspI	CGGWCCG	1 cut(s)	228
CviAII	CATG	4 cut(s)	170, 397, 1036, 1231
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	8 cut(s)	140, 420, 453, 1011, 1101, 1241, 1293, 1340
DpnI	GATC	1 cut(s)	1280
DpnII	GATC	1 cut(s)	1278
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	2 cut(s)	148, 979
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	846, 883
Eco147I	AGGCCT	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	702
Eco47I	GGWCC	5 cut(s)	158, 228, 254, 738, 938
Eco57I	CTGAAG	2 cut(s)	40, 786
Eco81I	CCTNAGG	1 cut(s)	1340
EcoRI	GAATTC	1 cut(s)	1112
EcoRII	CCWGG	2 cut(s)	186, 981
EcoRV	GATATC	1 cut(s)	702
EcoT14I	CCWWGG	2 cut(s)	846, 883
ErhI	CCWWGG	2 cut(s)	846, 883
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	4 cut(s)	173, 400, 1039, 1234
FaqI	GGGAC	2 cut(s)	129, 865
FatI	CATG	4 cut(s)	169, 396, 1035, 1230
FbaI	TGATCA	1 cut(s)	1278
Fnu4HI	GCNGC	3 cut(s)	782, 971, 1046
FokI	GGATG	4 cut(s)	575, 650, 725, 829
Fsp4HI	GCNGC	3 cut(s)	782, 971, 1046
FspBI	CTAG	5 cut(s)	86, 626, 675, 884, 998
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	3 cut(s)	782, 971, 1046
GsuI	CTGGAG	2 cut(s)	103, 209
HaeIII	GGCC	3 cut(s)	61, 150, 981
HapII	CCGG	4 cut(s)	147, 226, 720, 1327
HgaI	GACGC	3 cut(s)	750, 867, 1374
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	4 cut(s)	173, 400, 1039, 1234
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	957, 1127
HinfI	GANTC	8 cut(s)	183, 263, 315, 434, 449, 509, 776, 809
HpaII	CCGG	4 cut(s)	147, 226, 720, 1327
HphI	GGTGA	2 cut(s)	644, 1168
Hpy166II	GTNNAC	4 cut(s)	161, 254, 328, 1353
Hpy188I	TCNGA	9 cut(s)	232, 433, 448, 454, 508, 619, 706, 766, 1060
Hpy188III	TCNNGA	6 cut(s)	244, 626, 941, 1133, 1231, 1339
Hpy8I	GTNNAC	4 cut(s)	161, 254, 328, 1353
HpyAV	CCTTC	7 cut(s)	56, 64, 148, 253, 637, 761, 1211
HpyCH4III	ACNGT	2 cut(s)	104, 1180
HpyCH4V	TGCA	7 cut(s)	294, 396, 521, 1165, 1183, 1374, 1401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 899, 1079
HpyF3I	CTNAG	8 cut(s)	140, 420, 453, 1011, 1101, 1241, 1293, 1340
Hsp92II	CATG	4 cut(s)	173, 400, 1039, 1234
HspAI	GCGC	1 cut(s)	817
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	1 cut(s)	1278
LmnI	GCTCC	2 cut(s)	358, 1344
Lsp1109I	GCAGC	3 cut(s)	793, 982, 1057
LweI	GCATC	4 cut(s)	508, 703, 851, 865
MaeI	CTAG	5 cut(s)	86, 626, 675, 884, 998
MaeIII	GTNAC	3 cut(s)	316, 964, 1286
MalI	GATC	1 cut(s)	1280
MboI	GATC	1 cut(s)	1278
MlsI	TGGCCA	1 cut(s)	981
MluCI	AATT	7 cut(s)	368, 391, 528, 552, 1112, 1138, 1305
MluNI	TGGCCA	1 cut(s)	981
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	354
Mox20I	TGGCCA	1 cut(s)	981
MroXI	GAANNNNTTC	4 cut(s)	221, 676, 775, 1334
MscI	TGGCCA	1 cut(s)	981
MseI	TTAA	2 cut(s)	836, 1077
Msp20I	TGGCCA	1 cut(s)	981
MspI	CCGG	4 cut(s)	147, 226, 720, 1327
MspR9I	CCNGG	3 cut(s)	147, 188, 983
MvaI	CCWGG	2 cut(s)	188, 983
MwoI	GCNNNNNNNGC	3 cut(s)	106, 899, 1079
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	1278
NlaIII	CATG	4 cut(s)	173, 400, 1039, 1234
NlaIV	GGNNCC	4 cut(s)	159, 360, 739, 995
NmuCI	GTSAC	2 cut(s)	316, 1286
PagI	TCATGA	1 cut(s)	1230
PceI	AGGCCT	1 cut(s)	61
PdmI	GAANNNNTTC	4 cut(s)	221, 676, 775, 1334
PfeI	GAWTC	7 cut(s)	183, 263, 434, 449, 509, 776, 809
PflMI	CCANNNNNTGG	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	719
PkrI	GCNGC	3 cut(s)	783, 972, 1047
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	186, 981
PspGI	CCWGG	2 cut(s)	186, 981
PspN4I	GGNNCC	4 cut(s)	159, 360, 739, 995
PspPI	GGNCC	5 cut(s)	158, 228, 254, 738, 938
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
Rsr2I	CGGWCCG	1 cut(s)	228
RsrII	CGGWCCG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	836, 1077
SatI	GCNGC	3 cut(s)	782, 971, 1046
Sau3AI	GATC	1 cut(s)	1278
Sau96I	GGNCC	5 cut(s)	158, 228, 254, 738, 938
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	3 cut(s)	147, 188, 983
SfaNI	GCATC	4 cut(s)	508, 703, 851, 865
SinI	GGWCC	5 cut(s)	158, 228, 254, 738, 938
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	7 cut(s)	368, 391, 528, 552, 1112, 1138, 1305
SseBI	AGGCCT	1 cut(s)	61
SspI	AATATT	1 cut(s)	1365
SspMI	CTAG	5 cut(s)	86, 626, 675, 884, 998
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	145, 186, 981
StyI	CCWWGG	2 cut(s)	846, 883
TaaI	ACNGT	2 cut(s)	104, 1180
TaqI	TCGA	3 cut(s)	181, 243, 1022
TaqII	GACCGA	1 cut(s)	271
TasI	AATT	7 cut(s)	368, 391, 528, 552, 1112, 1138, 1305
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	7 cut(s)	183, 263, 434, 449, 509, 776, 809
Tru1I	TTAA	2 cut(s)	836, 1077
Tru9I	TTAA	2 cut(s)	836, 1077
TscAI	CASTG	2 cut(s)	276, 564
TseFI	GTSAC	2 cut(s)	316, 1286
TseI	GCWGC	3 cut(s)	781, 970, 1045
Tsp45I	GTSAC	2 cut(s)	316, 1286
TspDTI	ATGAA	7 cut(s)	110, 564, 819, 1052, 1105, 1247, 1331
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	276, 564
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	5 cut(s)	158, 228, 254, 738, 938
XapI	RAATTY	2 cut(s)	552, 1112
XbaI	TCTAGA	1 cut(s)	625
XmaJI	CCTAGG	1 cut(s)	883
XmnI	GAANNNNTTC	4 cut(s)	221, 676, 775, 1334
XspI	CTAG	5 cut(s)	86, 626, 675, 884, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.