Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011578.1

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Forward (+)

18363 .. 22533

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011578.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atgcccaagtccctaacaaggacgcaggacactctcagcccttcccttttagcattcaagcctcgccaacttctacttgcaaacctaaacctagagatgaagcagagcaaccccaataactctgccgcaaccttaagtcctcaccagaagggtcctctcccttacgctgtcgctaggttcctgcagggcaatgggttctctaaaaccctcaaaaagtttctgtctgaagctccaatcgagaaaaatttgctgaaggactcttcactggatttggatgagatgtactgcaaatattctgagatgtgtaataaggacaatacaagtgttaacagtcagaaggagaatggaaatgatccagccctggaaaaaattgcaaaatctaaggacaaaaagaaaaacagaaagacttttgagttactcaatcaaggtgatgaagaagtctgcacagaagaattaaagaagcctgaacaagtggaagaggctgataagaatggcaaggtgaaaaagaaaaagaagggcaagattgtttctgatactcctgatggtgtagaacaatgtaaactagagccattgtctgtggcaactgaagaaagtttaaaagatcatacatctgtcaagggaaaaggtgttggcgattctgagacagagaagaaatctaaggataagaagaaaaagaaaaacaagtcaaatgatgattctgttagtcctaatgttgaacagggtggcgtggaagcaaaacaggatgcaaatggaactagtgaaacaagtgcagatgaaaatctagtggatataaagcctaaagttaagaagaataagaaggaaagttcaggtggtgaggataagaaggtagttgccatgggagatgcaagtgacagtgttttgaaaaaggaagatttcaaattatctgatgttgaggctacaaataatgagaacaaaagctccaaaaaaaggaaaagattggattctgaaggaaatgattcagagcctgggaatagcaaagaagatgaaagtgctgagaagtcttccatgcagaagagcataaagaagcagtgcaatggttcaactgagccaaagactattaatgcatttcaaagggtaaaactggatgaggtggtattcacagatgagaagcttaaagataattcttactgggcgaaggatggtgcagagattggctatggtgcaaaagcacaggaaattctcggtcaagtcagaggaagggactttcggcatgaaaagaccaagaagaagcgtgggacatacagaggagggcagattgatctgcaatcgcactcagtcaagtttaattattctgatgaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

441

Amino Acids

48.98

Weight (kDa)

8.89

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	244, 1197
AcuI	CTGAAG	4 cut(s)	246, 272, 606, 987
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	18, 948
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	6 cut(s)	58, 716, 883, 898, 1062, 1091
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	2 cut(s)	360, 985
AloI	GAACNNNNNNTCC	2 cut(s)	923, 955
AluBI	AGCT	3 cut(s)	230, 939, 1132
AluI	AGCT	3 cut(s)	230, 939, 1132
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	986
ApoI	RAATTY	2 cut(s)	244, 1197
AseI	ATTAAT	1 cut(s)	1080
Asp700I	GAANNNNTTC	1 cut(s)	976
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	134, 440, 511, 845
AvaII	GGWCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	1014
BccI	CCATC	2 cut(s)	536, 1154
BciT130I	CCWGG	2 cut(s)	362, 987
BcoDI	GTCTC	1 cut(s)	635
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	5 cut(s)	92, 174, 563, 756, 782
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	362, 987
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	153, 179
BmrFI	CCNGG	2 cut(s)	362, 987
BmrI	ACTGGG	1 cut(s)	1159
BmsI	GCATC	2 cut(s)	733, 853
BmuI	ACTGGG	1 cut(s)	1159
BpiI	GAAGAC	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	360, 855, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	923, 953
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 948
Bse1I	ACTGG	3 cut(s)	270, 1107, 1154
Bse3DI	GCAATG	2 cut(s)	196, 1060
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	362, 987
BseDI	CCNNGG	3 cut(s)	360, 855, 986
BseGI	GGATG	4 cut(s)	280, 748, 1111, 1165
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	18, 948
BseMI	GCAATG	2 cut(s)	196, 1060
BseMII	CTCAG	6 cut(s)	49, 288, 630, 1005, 1056, 1308
BseNI	ACTGG	3 cut(s)	270, 1107, 1154
BseRI	GAGGAG	1 cut(s)	1281
BsgI	GTGCAG	3 cut(s)	427, 789, 1185
BslFI	GGGAC	2 cut(s)	1235, 1270
BslI	CCNNNNNNNGG	2 cut(s)	18, 948
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	1235, 1270
BsmI	GAATGC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	352, 601, 1279
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	6 cut(s)	48, 289, 631, 1006, 1057, 1307
BspLI	GGNNCC	2 cut(s)	153, 179
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	1028
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	196, 1060
BsrI	ACTGG	3 cut(s)	270, 1107, 1154
BssECI	CCNNGG	3 cut(s)	360, 855, 986
BssMI	GATC	3 cut(s)	352, 601, 1279
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	362, 987
Bst4CI	ACNGT	2 cut(s)	332, 875
Bst6I	CTCTTC	3 cut(s)	265, 471, 1028
BstAFI	CTTAAG	1 cut(s)	133
BstDEI	CTNAG	8 cut(s)	35, 297, 381, 639, 657, 1014, 1065, 1294
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	4 cut(s)	280, 748, 1111, 1165
BstKTI	GATC	3 cut(s)	355, 604, 1282
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	3 cut(s)	352, 601, 1279
BstNI	CCWGG	2 cut(s)	362, 987
BstSCI	CCNGG	2 cut(s)	360, 985
BstSFI	CTRYAG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	4 cut(s)	280, 748, 1111, 1165
BtsI	GCAGTG	1 cut(s)	1055
BtsIMutI	CAGTG	3 cut(s)	263, 880, 1055
CaiI	CAGNNNCTG	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	856, 1027, 1232
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	8 cut(s)	35, 297, 381, 639, 657, 1014, 1065, 1294
DpnI	GATC	3 cut(s)	354, 603, 1281
DpnII	GATC	3 cut(s)	352, 601, 1279
DraI	TTTAAA	1 cut(s)	597
Eam1104I	CTCTTC	3 cut(s)	265, 471, 1028
EarI	CTCTTC	3 cut(s)	265, 471, 1028
Eco130I	CCWWGG	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	4 cut(s)	246, 272, 606, 987
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	360, 985
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	1087
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	3 cut(s)	859, 1030, 1235
FaiI	YATR	8 cut(s)	606, 791, 857, 1028, 1040, 1179, 1233, 1261
FaqI	GGGAC	2 cut(s)	1235, 1270
FatI	CATG	3 cut(s)	855, 1026, 1231
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	4 cut(s)	287, 755, 1118, 1172
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	5 cut(s)	92, 174, 563, 756, 782
GluI	GCNGC	1 cut(s)	126
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	859, 1030, 1235
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	1130
HinfI	GANTC	5 cut(s)	257, 635, 695, 962, 977
HpaI	GTTAAC	1 cut(s)	328
HphI	GGTGA	4 cut(s)	134, 440, 511, 845
Hpy166II	GTNNAC	2 cut(s)	328, 560
Hpy188III	TCNNGA	2 cut(s)	238, 539
Hpy8I	GTNNAC	2 cut(s)	328, 560
HpyCH4III	ACNGT	2 cut(s)	332, 875
HpyF3I	CTNAG	8 cut(s)	35, 297, 381, 639, 657, 1014, 1065, 1294
Hsp92II	CATG	3 cut(s)	859, 1030, 1235
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	352, 601, 1279
LguI	GCTCTTC	1 cut(s)	1028
LmnI	GCTCC	2 cut(s)	235, 944
LweI	GCATC	2 cut(s)	733, 853
MaeI	CTAG	5 cut(s)	92, 174, 563, 756, 782
MaeIII	GTNAC	2 cut(s)	414, 869
MalI	GATC	3 cut(s)	354, 603, 1281
MboI	GATC	3 cut(s)	352, 601, 1279
MluCI	AATT	7 cut(s)	244, 369, 452, 899, 1141, 1197, 1306
MlyI	GAGTC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	1087
MroXI	GAANNNNTTC	1 cut(s)	976
MseI	TTAA	8 cut(s)	134, 327, 455, 596, 804, 1080, 1134, 1305
MspCI	CTTAAG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	362, 987
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	362, 987
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	3 cut(s)	352, 601, 1279
NlaIII	CATG	3 cut(s)	859, 1030, 1235
NlaIV	GGNNCC	2 cut(s)	153, 179
NmuCI	GTSAC	1 cut(s)	869
NsiI	ATGCAT	1 cut(s)	1087
PciSI	GCTCTTC	1 cut(s)	1028
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	976
PfeI	GAWTC	4 cut(s)	635, 695, 962, 977
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	360, 985
PspGI	CCWGG	2 cut(s)	360, 985
PspN4I	GGNNCC	2 cut(s)	153, 179
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	986
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	1028
SaqAI	TTAA	8 cut(s)	134, 327, 455, 596, 804, 1080, 1134, 1305
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	352, 601, 1279
Sau96I	GGNCC	1 cut(s)	152
SbfI	CCTGCAGG	1 cut(s)	186
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	362, 987
SdaI	CCTGCAGG	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	733, 853
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	755
Sse8387I	CCTGCAGG	1 cut(s)	186
Sse9I	AATT	7 cut(s)	244, 369, 452, 899, 1141, 1197, 1306
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	5 cut(s)	92, 174, 563, 756, 782
StyD4I	CCNGG	2 cut(s)	360, 985
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	2 cut(s)	332, 875
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	1193
TasI	AATT	7 cut(s)	244, 369, 452, 899, 1141, 1197, 1306
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	4 cut(s)	635, 695, 962, 977
Tru1I	TTAA	8 cut(s)	134, 327, 455, 596, 804, 1080, 1134, 1305
Tru9I	TTAA	8 cut(s)	134, 327, 455, 596, 804, 1080, 1134, 1305
TscAI	CASTG	3 cut(s)	270, 880, 1055
TseFI	GTSAC	1 cut(s)	869
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	5 cut(s)	113, 447, 789, 1020, 1248
TspRI	CASTG	3 cut(s)	270, 880, 1055
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	1080
XapI	RAATTY	2 cut(s)	244, 1197
XmnI	GAANNNNTTC	1 cut(s)	976
XspI	CTAG	5 cut(s)	92, 174, 563, 756, 782
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.