Rorug04G0013400

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008781
Physical Location & Seq
Reverse (-)
2141245 .. 2142618
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0013400.1

Sequence Viewer

Length: 609 bp
ATGTTGCTTGTGAAGATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGGACTTGGATTATGCCTGGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTGTGTTGTGGACTAGTCTGATTTGCGGTTATGGTTGGAGGGATATGCCAAAGGAGGCTTTTTTCTTGTTTTTCGAGATGAGTAATATGCTTATGTTGAATTCACTTGTTGATATGCACATGAAAAGTGGAGCTACTGATGCTGCAAAGCGGGTTTTTGATGAATGTGTGGATAAAAACCTGGTTCTTTACAATACGATTTTGTCAAATTCTGTGCGCCAGGGACTGGCTAGTGAAGCAGTTTCGGTCATCGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGACTGAGGGAATAAAAGGAGATACGGTGACCATGGTAGAGGTTGCATCTGCCTGCGGATATCTAGGAGCTCGTGATCTTGCAAAATGTGGTGACACTCAAAGTGCAATGAAGGTGTTCAATAACATGGCAAGAAGAGATGTTTCTGCTTGGACAGCAGCCATCGGAGCAATGGCCCTGGAAGGAAATGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

202

Amino Acids

22.36

Weight (kDa)

4.7

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 11 - 42 6.7e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 352
AciI CCGC 3 cut(s) 153, 277, 468
AcsI RAATTY 3 cut(s) 46, 226, 334
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 226, 532
AhlI ACTAGT 1 cut(s) 140
AjnI CCWGG 4 cut(s) 92, 306, 345, 588
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 260, 482
AluI AGCT 2 cut(s) 260, 482
Alw21I GWGCWC 1 cut(s) 484
AlwNI CAGNNNCTG 1 cut(s) 352
AoxI GGCC 2 cut(s) 397, 585
ApeKI GCWGC 2 cut(s) 269, 569
ApoI RAATTY 3 cut(s) 46, 226, 334
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 2 cut(s) 397, 586
AsuHPI GGTGA 3 cut(s) 392, 451, 515
BanII GRGCYC 1 cut(s) 484
BauI CACGAG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 256, 581
BccI CCATC 2 cut(s) 10, 581
BciT130I CCWGG 4 cut(s) 94, 308, 347, 590
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 3 cut(s) 141, 357, 476
BisI GCNGC 2 cut(s) 270, 570
BlsI GCNGC 2 cut(s) 271, 571
Bme1390I CCNGG 4 cut(s) 94, 308, 347, 590
BmgT120I GGNCC 2 cut(s) 397, 586
BmrFI CCNGG 4 cut(s) 94, 308, 347, 590
BmsI GCATC 2 cut(s) 256, 467
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 346, 444, 588
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 2 cut(s) 525, 588
BseBI CCWGG 4 cut(s) 94, 308, 347, 590
BseDI CCNNGG 3 cut(s) 346, 444, 588
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 2 cut(s) 525, 588
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 256, 581
BshFI GGCC 2 cut(s) 399, 587
BsiHKAI GWGCWC 1 cut(s) 484
BslFI GGGAC 2 cut(s) 92, 363
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 2 cut(s) 92, 363
BsnI GGCC 2 cut(s) 399, 587
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 1 cut(s) 487
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 3 cut(s) 153, 277, 468
BspANI GGCC 2 cut(s) 399, 587
BspCNI CTCAG 1 cut(s) 409
BsrDI GCAATG 2 cut(s) 525, 588
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 346, 444, 588
BssMI GATC 1 cut(s) 487
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 4 cut(s) 94, 308, 347, 590
Bst4CI ACNGT 2 cut(s) 130, 439
Bst6I CTCTTC 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 401, 417
BstDSI CCRYGG 1 cut(s) 444
BstEII GGTNACC 1 cut(s) 439
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 1 cut(s) 490
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 4 cut(s) 266, 362, 566, 578
BstNI CCWGG 4 cut(s) 94, 308, 347, 590
BstPI GGTNACC 1 cut(s) 439
BstSCI CCNGG 4 cut(s) 92, 306, 345, 588
BstV1I GCAGC 2 cut(s) 256, 581
BsuRI GGCC 2 cut(s) 399, 587
BtgI CCRYGG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 397, 586
CsiI ACCWGGT 1 cut(s) 306
CviAII CATG 3 cut(s) 247, 445, 538
CviJI RGCY 7 cut(s) 185, 260, 356, 399, 482, 572, 587
CviKI_1 RGCY 7 cut(s) 185, 260, 356, 399, 482, 572, 587
DdeI CTNAG 2 cut(s) 401, 417
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 484
Eco32I GATATC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 482
Eco91I GGTNACC 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 439
EcoRI GAATTC 2 cut(s) 46, 226
EcoRII CCWGG 4 cut(s) 92, 306, 345, 588
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 250, 448, 541
FaqI GGGAC 2 cut(s) 92, 363
FatI CATG 3 cut(s) 246, 444, 537
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 270, 570
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 2 cut(s) 270, 570
FspBI CTAG 3 cut(s) 141, 357, 476
GlaI GCGC 1 cut(s) 344
GluI GCNGC 2 cut(s) 270, 570
HaeIII GGCC 2 cut(s) 399, 587
HhaI GCGC 1 cut(s) 345
Hin1II CATG 3 cut(s) 250, 448, 541
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 1 cut(s) 55
HphI GGTGA 3 cut(s) 392, 451, 515
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 147, 578
Hpy188III TCNNGA 2 cut(s) 202, 485
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 3 cut(s) 91, 517, 587
HpyCH4III ACNGT 2 cut(s) 130, 439
HpyCH4V TGCA 6 cut(s) 68, 244, 272, 458, 494, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 362, 566, 578
HpyF3I CTNAG 2 cut(s) 401, 417
Hsp92II CATG 3 cut(s) 250, 448, 541
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 487
LmnI GCTCC 3 cut(s) 257, 479, 578
Lsp1109I GCAGC 2 cut(s) 256, 581
LweI GCATC 2 cut(s) 256, 467
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 3 cut(s) 141, 357, 476
MaeIII GTNAC 2 cut(s) 439, 503
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 3 cut(s) 25, 41, 558
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 3 cut(s) 46, 226, 334
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 5 cut(s) 19, 159, 175, 412, 445
MroXI GAANNNNTTC 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 4 cut(s) 94, 308, 347, 590
MvaI CCWGG 4 cut(s) 94, 308, 347, 590
MwoI GCNNNNNNNGC 4 cut(s) 266, 362, 566, 578
NcoI CCATGG 1 cut(s) 444
NdeII GATC 1 cut(s) 487
NlaIII CATG 3 cut(s) 250, 448, 541
NmuCI GTSAC 2 cut(s) 439, 503
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 2 cut(s) 271, 571
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 4 cut(s) 92, 306, 345, 588
PspEI GGTNACC 1 cut(s) 439
PspGI CCWGG 4 cut(s) 92, 306, 345, 588
PspPI GGNCC 2 cut(s) 397, 586
PstNI CAGNNNCTG 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 1 cut(s) 484
SatI GCNGC 2 cut(s) 270, 570
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 2 cut(s) 397, 586
ScrFI CCNGG 4 cut(s) 94, 308, 347, 590
SduI GDGCHC 1 cut(s) 484
SetI ASST 6 cut(s) 102, 262, 309, 456, 484, 528
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 2 cut(s) 256, 467
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 46, 226, 334
SsiI CCGC 3 cut(s) 153, 277, 468
SspMI CTAG 3 cut(s) 141, 357, 476
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 4 cut(s) 92, 306, 345, 588
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 130, 439
TaqI TCGA 1 cut(s) 201
TaqII GACCGA 1 cut(s) 361
TasI AATT 3 cut(s) 46, 226, 334
TfiI GAWTC 1 cut(s) 55
TseFI GTSAC 2 cut(s) 439, 503
TseI GCWGC 2 cut(s) 269, 569
Tsp45I GTSAC 2 cut(s) 439, 503
TspDTI ATGAA 5 cut(s) 47, 123, 263, 303, 536
Van91I CCANNNNNTGG 1 cut(s) 352
XapI RAATTY 3 cut(s) 46, 226, 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 3 cut(s) 141, 357, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.