RchiOBHm_Chr4g0398981

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008781
Physical Location & Seq
Reverse (-)
16062861 .. 16068539
5679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37113

Sequence Viewer

Length: 1326 bp
ATGCCCAAGTCCCGAACAAGGACGCAGGACACTCTCAGCCCTTCCCTTTTAGCATTCAAGCCTCGCCAACTTCTACTTGCAAACCTAAACCTAGAGATGAAGCAGAGCAACCCCAATAACTCTGCCCCAACCTTAAGTCCTCACCAGAAGGGTCCTCTCCTTTACGCTGTCGCTAGGTTCCTGCAGGGCAATGGGTTCTCTAAAACCCTCAAAAAGTTTCTGTCTGAAGCTCCAATCGAGAAAAATGTGCTGAAGGACTCTTCACTGGATTTGGAAGAGATGTACTGCAAATATTCTGAGATGTGTAATAAGGACAATACAAGTGTTAACAGTCAGAAGGAGAATGGAAATGATCCAGCCCTGGAAAAAATTGCAAAATCTAAGGACAAAAAGAAAAACAGAAAGACTTTTGAATTACTCAATCAAGGTGATGAACAAGTCTGCACAGAAGAATTAAAGAAGCCTGAACAAGTGGAAGAGGCTGATAAGAATGGCAAGGAGAAAAAGAAAAGGAAGGGCAAGATTGTTTCTGATACTCCTGATGGTGTAGAACAATGTAAACTAGAGCCATTGTCTGTGGCAACTGAAGAAAGTTTAAAAGATCATACATCTGTCAAGGGAAAAGGTGTTGGCGATTCTGAGACAGAGAAGAAATCTAAGGACAAGAAGAAAAAGAAAAACAAGTCAAATGATGATTCTGTTAGTCCTAATGTTGAACAGGGTGGCGTGGAAGCAAAACAGGATGCAAATGGAACTAGTGAAACAATTGCAGATAAAAATCTAGTGGATATTAAGCCTAAAGTTAAGAAGAATAAGAAGGAAAGTTCAGGTGGTGAGGATAAGAAGGTAGTTGCCATGGGAGATGCAAGTGACAGTGTTTTGAAAAAGGAAGATATCAAATTATCTGATGTTGAGGCTACAAATAATGAGAACAAAAGCTCCAAAAAAAGGAAAAGATTGGATTCTGAAGGAAATGATTCAGAGCCTGGGAAGAGCAAAGAAGATGAAAGTGCTGAGAAGTCTTCCATGCAGAAGAGCATAAAGAAGCAGTGCAATGGTTCAACTGAGCCAAAGACTATTAATGCATTTCAAAGGGTAAAACTGGATGAGGTGGTATTCACAGATGAGAAGCTTAAAGATAATTCTTACTGGGCAAAGGATGGTGCAGAGATTGGCTATGGTGCAAAAGCACAGGAAATTCTCGGTCAAGTCAGAGGAAGGGACTTTCGGCATGAAAAGACCAAGAAGAAGCGTGGGACATACAGAGGAGGGCAGATTGATCTGCAATCGCACTCAGTCAAGTTCAATTATTCTGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

441

Amino Acids

49.13

Weight (kDa)

9.1

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 363 - 435 2.8e-27 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 1197
AcuI CTGAAG 4 cut(s) 246, 272, 606, 987
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 18, 948
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 7 cut(s) 58, 413, 716, 883, 1062, 1091, 1306
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 2 cut(s) 360, 985
AloI GAACNNNNNNTCC 2 cut(s) 923, 955
AluBI AGCT 3 cut(s) 230, 939, 1132
AluI AGCT 3 cut(s) 230, 939, 1132
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 986
ApoI RAATTY 1 cut(s) 1197
AseI ATTAAT 1 cut(s) 1080
Asp700I GAANNNNTTC 1 cut(s) 976
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 134, 440, 845
AvaII GGWCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 1014
BccI CCATC 2 cut(s) 536, 1154
BciT130I CCWGG 2 cut(s) 362, 987
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 5 cut(s) 92, 174, 563, 756, 782
BfmI CTRYAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 362, 987
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 153, 179
BmrFI CCNGG 2 cut(s) 362, 987
BmrI ACTGGG 1 cut(s) 1159
BmsI GCATC 2 cut(s) 733, 853
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 1 cut(s) 1014
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 3 cut(s) 360, 855, 986
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 948
Bse1I ACTGG 3 cut(s) 270, 1107, 1154
Bse3DI GCAATG 2 cut(s) 196, 1060
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 2 cut(s) 362, 987
BseDI CCNNGG 3 cut(s) 360, 855, 986
BseGI GGATG 3 cut(s) 748, 1111, 1165
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 2 cut(s) 18, 948
BseMI GCAATG 2 cut(s) 196, 1060
BseMII CTCAG 6 cut(s) 49, 288, 630, 1005, 1056, 1308
BseNI ACTGG 3 cut(s) 270, 1107, 1154
BseRI GAGGAG 1 cut(s) 1281
BsgI GTGCAG 2 cut(s) 427, 1185
BslFI GGGAC 2 cut(s) 1235, 1270
BslI CCNNNNNNNGG 2 cut(s) 18, 948
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 1235, 1270
BsmI GAATGC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 352, 601, 1279
Bsp19I CCATGG 1 cut(s) 855
BspCNI CTCAG 6 cut(s) 48, 289, 631, 1006, 1057, 1307
BspLI GGNNCC 2 cut(s) 153, 179
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 2 cut(s) 986, 1028
BspTI CTTAAG 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 196, 1060
BsrI ACTGG 3 cut(s) 270, 1107, 1154
BssECI CCNNGG 3 cut(s) 360, 855, 986
BssMI GATC 3 cut(s) 352, 601, 1279
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 2 cut(s) 362, 987
Bst4CI ACNGT 2 cut(s) 332, 875
Bst6I CTCTTC 5 cut(s) 265, 270, 471, 986, 1028
BstAFI CTTAAG 1 cut(s) 133
BstDEI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1014, 1065, 1294
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 3 cut(s) 748, 1111, 1165
BstKTI GATC 3 cut(s) 355, 604, 1282
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 3 cut(s) 352, 601, 1279
BstNI CCWGG 2 cut(s) 362, 987
BstSCI CCNGG 2 cut(s) 360, 985
BstSFI CTRYAG 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 1014
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 3 cut(s) 748, 1111, 1165
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 3 cut(s) 263, 880, 1055
CaiI CAGNNNCTG 1 cut(s) 986
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 856, 1027, 1232
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1014, 1065, 1294
DpnI GATC 3 cut(s) 354, 603, 1281
DpnII GATC 3 cut(s) 352, 601, 1279
DraI TTTAAA 1 cut(s) 597
Eam1104I CTCTTC 5 cut(s) 265, 270, 471, 986, 1028
EarI CTCTTC 5 cut(s) 265, 270, 471, 986, 1028
Eco130I CCWWGG 1 cut(s) 855
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 4 cut(s) 246, 272, 606, 987
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 360, 985
EcoRV GATATC 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 3 cut(s) 859, 1030, 1235
FaiI YATR 7 cut(s) 606, 857, 1028, 1040, 1179, 1233, 1261
FaqI GGGAC 2 cut(s) 1235, 1270
FatI CATG 3 cut(s) 855, 1026, 1231
FokI GGATG 3 cut(s) 755, 1118, 1172
FspBI CTAG 5 cut(s) 92, 174, 563, 756, 782
HgaI GACGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 859, 1030, 1235
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 1130
HinfI GANTC 5 cut(s) 257, 635, 695, 962, 977
HpaI GTTAAC 1 cut(s) 328
HphI GGTGA 3 cut(s) 134, 440, 845
Hpy166II GTNNAC 2 cut(s) 328, 560
Hpy188III TCNNGA 3 cut(s) 12, 238, 539
Hpy8I GTNNAC 2 cut(s) 328, 560
HpyAV CCTTC 9 cut(s) 51, 142, 247, 331, 508, 811, 838, 962, 1212
HpyCH4III ACNGT 2 cut(s) 332, 875
HpyF3I CTNAG 8 cut(s) 35, 297, 381, 639, 657, 1014, 1065, 1294
Hsp92II CATG 3 cut(s) 859, 1030, 1235
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 352, 601, 1279
LguI GCTCTTC 2 cut(s) 986, 1028
LmnI GCTCC 2 cut(s) 235, 944
LweI GCATC 2 cut(s) 733, 853
MaeI CTAG 5 cut(s) 92, 174, 563, 756, 782
MaeIII GTNAC 1 cut(s) 869
MalI GATC 3 cut(s) 354, 603, 1281
MboI GATC 3 cut(s) 352, 601, 1279
MfeI CAATTG 1 cut(s) 765
MluCI AATT 8 cut(s) 369, 413, 452, 765, 899, 1141, 1197, 1306
MlyI GAGTC 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 1087
MroXI GAANNNNTTC 1 cut(s) 976
MseI TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1080, 1134
MspCI CTTAAG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 362, 987
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 2 cut(s) 362, 987
NcoI CCATGG 1 cut(s) 855
NdeII GATC 3 cut(s) 352, 601, 1279
NlaIII CATG 3 cut(s) 859, 1030, 1235
NlaIV GGNNCC 2 cut(s) 153, 179
NmuCI GTSAC 1 cut(s) 869
NsiI ATGCAT 1 cut(s) 1087
PciSI GCTCTTC 2 cut(s) 986, 1028
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 976
PfeI GAWTC 4 cut(s) 635, 695, 962, 977
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 360, 985
PspGI CCWGG 2 cut(s) 360, 985
PspN4I GGNNCC 2 cut(s) 153, 179
PspPI GGNCC 1 cut(s) 152
PspPPI RGGWCCY 1 cut(s) 152
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 986
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 2 cut(s) 986, 1028
SaqAI TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1080, 1134
Sau3AI GATC 3 cut(s) 352, 601, 1279
Sau96I GGNCC 1 cut(s) 152
SbfI CCTGCAGG 1 cut(s) 186
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 362, 987
SdaI CCTGCAGG 1 cut(s) 186
SfaNI GCATC 2 cut(s) 733, 853
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 755
Sse8387I CCTGCAGG 1 cut(s) 186
Sse9I AATT 8 cut(s) 369, 413, 452, 765, 899, 1141, 1197, 1306
SspI AATATT 1 cut(s) 293
SspMI CTAG 5 cut(s) 92, 174, 563, 756, 782
StyD4I CCNGG 2 cut(s) 360, 985
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 2 cut(s) 332, 875
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 1193
TasI AATT 8 cut(s) 369, 413, 452, 765, 899, 1141, 1197, 1306
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 4 cut(s) 635, 695, 962, 977
Tru1I TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1080, 1134
Tru9I TTAA 8 cut(s) 134, 327, 455, 596, 792, 804, 1080, 1134
TscAI CASTG 3 cut(s) 270, 880, 1055
TseFI GTSAC 1 cut(s) 869
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 4 cut(s) 113, 447, 1020, 1248
TspRI CASTG 3 cut(s) 270, 880, 1055
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 1 cut(s) 1197
XmnI GAANNNNTTC 1 cut(s) 976
XspI CTAG 5 cut(s) 92, 174, 563, 756, 782
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.