Rw4G007560

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008781
Physical Location & Seq
Reverse (-)
16228869 .. 16233297
4429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007560.1

Sequence Viewer

Length: 1311 bp
ATGCCCAAGTCCCTAACAAGGACGCAGGACACTCTCAGCCCTTCCCTTTTAGCATTCAAGCCTCGCCAACTTCTACTTGCAAACCTAAACCTAGAGATGAAGCAGAGCAACCCCAATAACTCTGCCCCAACCTTAAGTCCTCACCAGAAGGGTCCTCTCCTTTACGCTGTCGCTAGGTTCCTGCAGGGCAATGGGTTCTCTAAAACCCTCAAAAAGTTTCTGTCTGAAGCTCCAATCGAGAAAAATGTGCTGAAGGACTCTTCACTGGATTTGGAAGAGATGTACTGCAAATATTCTGAGATGTGTAATAAGGACAATACAAGTGTTAACAGTCAGAAGGAGAATGGAAATGATCCAGCCCTGGAAAAAATTGCAAAATCTAAGGACAAAAAGAAAAACAGAAAGACTTTTGAGTTACTCAATCAAGGTGATGAACAAGTCTGCACAGAAGAATTAAAGAAGCCTGAACAAGTGGAAGAGGCTGATAAGAATGGCAAGGTGAAAAAGAAAAAGAAGGGCAAGATTGTTTCTGATACTCCTGATGGTGTAGAACAATGTAAACTAGAGCCATTGTCTGTGGCAACTGAAGAAAGTTTAAAAGATCATACATCTGTCAAGGGAAAAGGTGTTGGCGATTCTGAGACAGAGAAGAAATCTAAGGATAAGAAGAAAAAGAAAAACAAGTCAAATGATGATTCTGTTAGTCCTAATGTTGAACAGGGTGGCGTGGAAGCAAAACAGGATGCAAATGGAACTAGTGAAAATCTAGTGGATATAAAGCCTAAAGTTAAGAAGAATAAGAAGGAAAGTTCAGGTGGTGAGGATAAGAAGGTAGTTGCCATGGGAGATGCAAGTGACAGTGTTTTGAAAAAGGAAGATTTCAAATTATCTGATGTTGAGGCTACAAATAATGAGAACAAAAGCTCCAAAAAAAGGAAAAGATTGGATTCTGAAGGAAATGATTCAGAGCCTGGGAAGAGCAAAGAAGATGAAAGTGCTGAGAAGTCTTCCATGCAGAAGAGCATAAAGAAGCAGTGCAATGGTTCAACTGAGCCAAAGACTATTAATGCTTTTCAAAGGGTAAAACTGGATGAGGTGGTATTCACAGATGAGAAGCTTAAAGATAATTCTTACTGGGCGAAGGATGGTGCAGAGATTGGCTATGGTGCAAAAGCACAGGAAATTCTCGGTCAAGTCAGAGGAAGGGACTTTCGGCATGAAAAGACCAAGAAGAAGCGTGGGACATACAGAGGAGGGCAGATTGATCTGCAATCGCACTCAGTCAAGTTTAATTATTCTGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

436

Amino Acids

48.53

Weight (kDa)

9.1

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 358 - 430 2.7e-27 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 1182
AcuI CTGAAG 4 cut(s) 246, 272, 606, 972
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 18, 933
AflII CTTAAG 1 cut(s) 133
AgsI TTSAA 6 cut(s) 58, 716, 868, 883, 1047, 1076
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 2 cut(s) 360, 970
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 3 cut(s) 230, 924, 1117
AluI AGCT 3 cut(s) 230, 924, 1117
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 971
ApoI RAATTY 1 cut(s) 1182
AseI ATTAAT 1 cut(s) 1065
Asp700I GAANNNNTTC 1 cut(s) 961
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 134, 440, 511, 830
AvaII GGWCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 999
BccI CCATC 2 cut(s) 536, 1139
BciT130I CCWGG 2 cut(s) 362, 972
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 5 cut(s) 92, 174, 563, 756, 767
BfmI CTRYAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 362, 972
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 153, 179
BmrFI CCNGG 2 cut(s) 362, 972
BmrI ACTGGG 1 cut(s) 1144
BmsI GCATC 2 cut(s) 733, 838
BmuI ACTGGG 1 cut(s) 1144
BpiI GAAGAC 1 cut(s) 999
BsaJI CCNNGG 3 cut(s) 360, 840, 971
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 933
Bse1I ACTGG 3 cut(s) 270, 1092, 1139
Bse3DI GCAATG 2 cut(s) 196, 1045
BseBI CCWGG 2 cut(s) 362, 972
BseDI CCNNGG 3 cut(s) 360, 840, 971
BseGI GGATG 3 cut(s) 748, 1096, 1150
BseLI CCNNNNNNNGG 2 cut(s) 18, 933
BseMI GCAATG 2 cut(s) 196, 1045
BseMII CTCAG 6 cut(s) 49, 288, 630, 990, 1041, 1293
BseNI ACTGG 3 cut(s) 270, 1092, 1139
BseRI GAGGAG 1 cut(s) 1266
BsgI GTGCAG 2 cut(s) 427, 1170
BslFI GGGAC 2 cut(s) 1220, 1255
BslI CCNNNNNNNGG 2 cut(s) 18, 933
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 1220, 1255
BsmI GAATGC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 352, 601, 1264
Bsp19I CCATGG 1 cut(s) 840
BspCNI CTCAG 6 cut(s) 48, 289, 631, 991, 1042, 1292
BspLI GGNNCC 2 cut(s) 153, 179
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 2 cut(s) 971, 1013
BspTI CTTAAG 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 196, 1045
BsrI ACTGG 3 cut(s) 270, 1092, 1139
BssECI CCNNGG 3 cut(s) 360, 840, 971
BssMI GATC 3 cut(s) 352, 601, 1264
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 2 cut(s) 362, 972
Bst4CI ACNGT 2 cut(s) 332, 860
Bst6I CTCTTC 5 cut(s) 265, 270, 471, 971, 1013
BstAFI CTTAAG 1 cut(s) 133
BstDEI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 999, 1050, 1279
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 3 cut(s) 748, 1096, 1150
BstKTI GATC 3 cut(s) 355, 604, 1267
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 3 cut(s) 352, 601, 1264
BstNI CCWGG 2 cut(s) 362, 972
BstSCI CCNGG 2 cut(s) 360, 970
BstSFI CTRYAG 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 999
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 3 cut(s) 748, 1096, 1150
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 3 cut(s) 263, 865, 1040
CaiI CAGNNNCTG 1 cut(s) 971
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 841, 1012, 1217
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 8 cut(s) 35, 297, 381, 639, 657, 999, 1050, 1279
DpnI GATC 3 cut(s) 354, 603, 1266
DpnII GATC 3 cut(s) 352, 601, 1264
DraI TTTAAA 1 cut(s) 597
Eam1104I CTCTTC 5 cut(s) 265, 270, 471, 971, 1013
EarI CTCTTC 5 cut(s) 265, 270, 471, 971, 1013
Eco130I CCWWGG 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 4 cut(s) 246, 272, 606, 972
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 360, 970
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 3 cut(s) 844, 1015, 1220
FaiI YATR 8 cut(s) 606, 776, 842, 1013, 1025, 1164, 1218, 1246
FaqI GGGAC 2 cut(s) 1220, 1255
FatI CATG 3 cut(s) 840, 1011, 1216
FokI GGATG 3 cut(s) 755, 1103, 1157
FspBI CTAG 5 cut(s) 92, 174, 563, 756, 767
HgaI GACGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 844, 1015, 1220
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 5 cut(s) 257, 635, 695, 947, 962
HpaI GTTAAC 1 cut(s) 328
HphI GGTGA 4 cut(s) 134, 440, 511, 830
Hpy166II GTNNAC 2 cut(s) 328, 560
Hpy188III TCNNGA 2 cut(s) 238, 539
Hpy8I GTNNAC 2 cut(s) 328, 560
HpyCH4III ACNGT 2 cut(s) 332, 860
HpyF3I CTNAG 8 cut(s) 35, 297, 381, 639, 657, 999, 1050, 1279
Hsp92II CATG 3 cut(s) 844, 1015, 1220
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 352, 601, 1264
LguI GCTCTTC 2 cut(s) 971, 1013
LmnI GCTCC 2 cut(s) 235, 929
LweI GCATC 2 cut(s) 733, 838
MaeI CTAG 5 cut(s) 92, 174, 563, 756, 767
MaeIII GTNAC 2 cut(s) 414, 854
MalI GATC 3 cut(s) 354, 603, 1266
MboI GATC 3 cut(s) 352, 601, 1264
MluCI AATT 6 cut(s) 369, 452, 884, 1126, 1182, 1291
MlyI GAGTC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 961
MseI TTAA 8 cut(s) 134, 327, 455, 596, 789, 1065, 1119, 1290
MspCI CTTAAG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 362, 972
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 2 cut(s) 362, 972
NcoI CCATGG 1 cut(s) 840
NdeII GATC 3 cut(s) 352, 601, 1264
NlaIII CATG 3 cut(s) 844, 1015, 1220
NlaIV GGNNCC 2 cut(s) 153, 179
NmuCI GTSAC 1 cut(s) 854
PciSI GCTCTTC 2 cut(s) 971, 1013
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 4 cut(s) 635, 695, 947, 962
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 360, 970
PspGI CCWGG 2 cut(s) 360, 970
PspN4I GGNNCC 2 cut(s) 153, 179
PspPI GGNCC 1 cut(s) 152
PspPPI RGGWCCY 1 cut(s) 152
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 971
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 2 cut(s) 971, 1013
SaqAI TTAA 8 cut(s) 134, 327, 455, 596, 789, 1065, 1119, 1290
Sau3AI GATC 3 cut(s) 352, 601, 1264
Sau96I GGNCC 1 cut(s) 152
SbfI CCTGCAGG 1 cut(s) 186
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 362, 972
SdaI CCTGCAGG 1 cut(s) 186
SfaNI GCATC 2 cut(s) 733, 838
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 755
Sse8387I CCTGCAGG 1 cut(s) 186
Sse9I AATT 6 cut(s) 369, 452, 884, 1126, 1182, 1291
SspI AATATT 1 cut(s) 293
SspMI CTAG 5 cut(s) 92, 174, 563, 756, 767
StyD4I CCNGG 2 cut(s) 360, 970
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 2 cut(s) 332, 860
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 1178
TasI AATT 6 cut(s) 369, 452, 884, 1126, 1182, 1291
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 4 cut(s) 635, 695, 947, 962
Tru1I TTAA 8 cut(s) 134, 327, 455, 596, 789, 1065, 1119, 1290
Tru9I TTAA 8 cut(s) 134, 327, 455, 596, 789, 1065, 1119, 1290
TscAI CASTG 3 cut(s) 270, 865, 1040
TseFI GTSAC 1 cut(s) 854
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 4 cut(s) 113, 447, 1005, 1233
TspRI CASTG 3 cut(s) 270, 865, 1040
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 1 cut(s) 1182
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 5 cut(s) 92, 174, 563, 756, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.