FvH4_4g06950

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008781
Physical Location & Seq
Reverse (-)
6319704 .. 6324058
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06950.t1

Sequence Viewer

Length: 1149 bp
ATGCCCAAGTCCCACACAAGGACGCAGGACACTCTCAGCCCTTCCCTTCTAGCCTTCAAGCCTCGCCAAGTCCTTCTACTTGCAAACCGTAACCTACACATGAAGCAGAGCAACCCCAATAACGACCAGAAGGGTCCTCTCCTCCACACCGTCGCCAAGTTCCTCGAGGCCAATGGGTTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTCCAGTCGAGAAAATTGGTATGAAGGAGTCTTCACTGGATTTGGAAGAGATGTACTGCAAATATTCTGAAATGTGTAATAAAGACAATACAAGTGTTAGCAGTCAGAAGGAGAATGGAAATGTTCTAGCTCCTGAAAAAGTTGCAAAATCTAAAGACAAGAAGAAAGACAGAAAGAAGGGAAAGATTGTTTCTGACACTCCTGATAGTGTAGAACAACATAAACCCGAGCCACTTTCCGGGGCTACTGAAGAAAGTTTAAAAGATCATACATCTGTGAAGGAAAAAGATGTCGGTGATTCTGAGACAGAGAAAAAAACTAAGGATAAGAAGAAAAGGAAAAACAAGTCAAATGATGCAAATCTAACTGGTGAAACAATTGCAGATGAAAACCTATTGGATGTTAAACCTAAAGTTAAAAAGAATAAGAAGGAAACTTCTGGTGGCGAGGATAAGAAGGTAGTTGCCATGGAAGATGCAAGTGACACTGTTTTGAAAAAGGAAGATTTCAAGATATCTGATGTGGATGCTACAGATAATGAGAACAAAAGCTCCAAAAAAAGGAAAAGATTGGATTCTGTAGATAATGATTCAGAGCCTGGGAAGAGCAAAGAAGATGAAAGTGCTGAGAAGTCTTACATGCAGAAGAGCATAAAGAAGCAGCGCAATGGTTCAACTGAGCCAAAGACGATTAATGCCTTTCAAAGGGTAAAAATTGATGAAGTGGTATTCACAGATGATAAGCTTAAAGATAACTCTTATTGGGCTAAGGATGGTGCAGAGATCGGCTATGGTGCAAAAGCACAGGAGATTCTTGGTCAAGTCAGAGGAAGGGACTTTCGACATGAAAAGACCAAGAAGAAGCGTGGCACATACAGAGGAGGACAGATTGATCTGCAATCGCACTCTGTCAAGTTCAATTATTCTGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

383

Amino Acids

43.02

Weight (kDa)

9.19

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 304 - 376 2.6e-27 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 228, 480
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 18, 449, 771, 915
AgsI TTSAA 6 cut(s) 58, 706, 721, 885, 914, 1129
AjnI CCWGG 1 cut(s) 808
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 4 cut(s) 212, 341, 762, 955
AluI AGCT 4 cut(s) 212, 341, 762, 955
Alw26I GTCTC 1 cut(s) 509
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 2 cut(s) 164, 437
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 871
AseI ATTAAT 1 cut(s) 903
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 518, 593
AvaI CYCGRG 2 cut(s) 164, 437
AvaII GGWCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 883
BccI CCATC 1 cut(s) 977
BciT130I CCWGG 1 cut(s) 810
BcnI CCSGG 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 2 cut(s) 50, 338
BfmI CTRYAG 2 cut(s) 741, 789
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme1390I CCNGG 2 cut(s) 451, 810
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 2 cut(s) 164, 437
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 451, 810
BmsI GCATC 3 cut(s) 556, 676, 727
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 978
BpuMI CCSGG 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 450, 678, 809
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 449, 771, 915
Bse1I ACTGG 3 cut(s) 215, 252, 583
Bse3DI GCAATG 1 cut(s) 883
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 3 cut(s) 450, 678, 809
BseGI GGATG 3 cut(s) 616, 742, 988
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 4 cut(s) 18, 449, 771, 915
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 4 cut(s) 49, 504, 828, 879
BseNI ACTGG 3 cut(s) 215, 252, 583
BseRI GAGGAG 2 cut(s) 131, 1104
BseXI GCAGC 1 cut(s) 883
BsgI GTGCAG 1 cut(s) 1008
BshFI GGCC 1 cut(s) 170
BsiHKCI CYCGRG 2 cut(s) 164, 437
BsiSI CCGG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 1058
BslI CCNNNNNNNGG 4 cut(s) 18, 449, 771, 915
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 1058
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 164, 437
Bsp143I GATC 3 cut(s) 475, 993, 1102
Bsp19I CCATGG 1 cut(s) 678
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 4 cut(s) 48, 505, 829, 880
BspLI GGNNCC 1 cut(s) 135
BspQI GCTCTTC 2 cut(s) 809, 851
BsrDI GCAATG 1 cut(s) 883
BsrI ACTGG 3 cut(s) 215, 252, 583
BssECI CCNNGG 3 cut(s) 450, 678, 809
BssMI GATC 3 cut(s) 475, 993, 1102
BssT1I CCWWGG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 3 cut(s) 89, 151, 700
Bst6I CTCTTC 3 cut(s) 252, 809, 851
BstDEI CTNAG 6 cut(s) 35, 513, 531, 837, 888, 978
BstDSI CCRYGG 1 cut(s) 678
BstENI CCTNNNNNAGG 1 cut(s) 913
BstF5I GGATG 3 cut(s) 616, 742, 988
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 3 cut(s) 478, 996, 1105
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 475, 993, 1102
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 449, 808
BstSFI CTRYAG 2 cut(s) 741, 789
BstV1I GCAGC 1 cut(s) 883
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 678
BtsCI GGATG 3 cut(s) 616, 742, 988
BtsIMutI CAGTG 2 cut(s) 245, 696
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 265
CviAII CATG 4 cut(s) 100, 679, 850, 1055
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 6 cut(s) 35, 513, 531, 837, 888, 978
DpnI GATC 3 cut(s) 477, 995, 1104
DpnII GATC 3 cut(s) 475, 993, 1102
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 3 cut(s) 252, 809, 851
EarI CTCTTC 3 cut(s) 252, 809, 851
Eco130I CCWWGG 1 cut(s) 678
Eco32I GATATC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 228, 480
Eco88I CYCGRG 2 cut(s) 164, 437
EcoNI CCTNNNNNAGG 1 cut(s) 913
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 808
EcoRV GATATC 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 4 cut(s) 103, 682, 853, 1058
FaqI GGGAC 1 cut(s) 1058
FatI CATG 4 cut(s) 99, 678, 849, 1054
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 3 cut(s) 623, 749, 995
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 2 cut(s) 50, 338
GlaI GCGC 1 cut(s) 875
GluI GCNGC 1 cut(s) 872
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 450
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 876
Hin1II CATG 4 cut(s) 103, 682, 853, 1058
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 5 cut(s) 239, 509, 785, 800, 1021
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 518, 593
Hpy188I TCNGA 9 cut(s) 208, 280, 318, 406, 514, 730, 805, 1037, 1138
Hpy188III TCNNGA 4 cut(s) 220, 344, 413, 721
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 89, 151, 700
HpyF3I CTNAG 6 cut(s) 35, 513, 531, 837, 888, 978
Hsp92II CATG 4 cut(s) 103, 682, 853, 1058
HspAI GCGC 1 cut(s) 874
Kzo9I GATC 3 cut(s) 475, 993, 1102
LguI GCTCTTC 2 cut(s) 809, 851
LmnI GCTCC 3 cut(s) 217, 346, 767
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 3 cut(s) 556, 676, 727
MaeI CTAG 2 cut(s) 50, 338
MaeIII GTNAC 2 cut(s) 89, 692
MalI GATC 3 cut(s) 477, 995, 1104
MboI GATC 3 cut(s) 475, 993, 1102
MfeI CAATTG 1 cut(s) 588
MluCI AATT 4 cut(s) 225, 588, 924, 1129
MlyI GAGTC 1 cut(s) 248
MseI TTAA 5 cut(s) 470, 615, 627, 903, 957
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 2 cut(s) 451, 810
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 1 cut(s) 810
NciI CCSGG 1 cut(s) 451
NcoI CCATGG 1 cut(s) 678
NdeII GATC 3 cut(s) 475, 993, 1102
NlaIII CATG 4 cut(s) 103, 682, 853, 1058
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 1 cut(s) 853
PaeR7I CTCGAG 1 cut(s) 164
PciSI GCTCTTC 2 cut(s) 809, 851
PfeI GAWTC 4 cut(s) 509, 785, 800, 1021
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 134
PspPPI RGGWCCY 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SapI GCTCTTC 2 cut(s) 809, 851
SaqAI TTAA 5 cut(s) 470, 615, 627, 903, 957
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 3 cut(s) 475, 993, 1102
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 451, 810
SetI ASST 8 cut(s) 96, 214, 343, 606, 622, 672, 764, 957
SfaNI GCATC 3 cut(s) 556, 676, 727
SfcI CTRYAG 2 cut(s) 741, 789
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 4 cut(s) 225, 588, 924, 1129
SspI AATATT 1 cut(s) 275
SspMI CTAG 2 cut(s) 50, 338
StyD4I CCNGG 2 cut(s) 449, 808
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 3 cut(s) 89, 151, 700
TaqI TCGA 3 cut(s) 165, 219, 1051
TasI AATT 4 cut(s) 225, 588, 924, 1129
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 4 cut(s) 509, 785, 800, 1021
Tru1I TTAA 5 cut(s) 470, 615, 627, 903, 957
Tru9I TTAA 5 cut(s) 470, 615, 627, 903, 957
TscAI CASTG 2 cut(s) 252, 703
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 871
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 6 cut(s) 116, 248, 612, 843, 945, 1071
TspRI CASTG 2 cut(s) 252, 703
VpaK11BI GGWCC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 913
XceI RCATGY 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 2 cut(s) 50, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.