Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Reverse (-)

17573698 .. 17576959

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCCCAAATCCCTAACAAACACGCAGGAGGACGCTATCAACCCTTCCCTTCTCGCATTCAAGCCTCGCCAAGTTCTGCTCTTAAACCGAGACATGAAGCACAGCAAGCCTAGTGGCTCTGCCGATGGAGCCCAAACTCTGAGTCCCGATCAGAAGGGTCAACTCCTCCGCGCTGTGGCTTGGTTCCTGGAGAGCAATGGGTTCTCCAGAACCTTGAAAAAGTTCCTTTCAGAAGCTGGAATCGAGAAAAGTGAAGTGAAGGACTCTCTTTTGGATTTTGGAGAAATGTACTGCAAGTATTCTGAGATGTGTAGAGGCACAAATGTCCACAACGAGGATAAAGTATTTAAGGATACCTTCCACTTGCTGGTAAAGGCTGATAAGTTATCCCAGGAGGCAAAGAAGTCCAAGATAGCTTCTGGTTCTCTTGCCGATGCAGCAGCAGAACATCAATCAGAGCAATTTCCTGGTGCAACTGGAAAAAAAATCAAAGATGCTGTGCCTTTAAAGGAAAATGGTGTTGGTGATTCTGAGGTAGAGAAGAAACCGAAGGATAAGAAGAAAAAGAAGACCAAGTCAAGTATGGATTCTGTCAGTGCTGGTGTAGAGCAGCATGGCTTGGAAGGAAAAAATGATGCAAATGAAATTTGTAAATCAATTGCTGATGACAATCCAATGGATGAGAAGAGTGTCAAATCTAAAAGTAAGAAGAAAAAGAAAGATGGTTTGGTTTCTGAAAGTTTAGGTGGTGAGAATGGGAGGGCACTTAGTATTGGAGATATGAATGGAACTAGTTCTGGAAAAGATAATTTCAAGATATCAGAAGCGGATGCTACTGATAAGGAGAATAAATGTTCCAAAAAAAGAAAAAGATTAGTTTCTGAAGGAAATGATTCACAGCCTACTGACAACAAAGAAGATGAAGAATCCAAGTGCAGAATGGTAGAGGGTTCAAAAGCATCCAAGGGAAGTGAGCAACCAGAAAATAATGATGCATCACAAGGAAAAGCTGAAAATTTTGGTGAACTAGAGAAAAGGGCCGAGAAGTCTTCGAAAAAGAAAAGCAAGAAGCAACTCAACGGTTCAGCTGAGGTATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

368

Amino Acids

40.03

Weight (kDa)

8.92

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	169, 827
AcsI	RAATTY	2 cut(s)	645, 1015
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	175, 334, 367
AgsI	TTSAA	4 cut(s)	61, 217, 814, 954
AhlI	ACTAGT	1 cut(s)	791
AjnI	CCWGG	3 cut(s)	186, 390, 466
AjuI	GAANNNNNNNTTGG	4 cut(s)	504, 536, 710, 742
AluBI	AGCT	4 cut(s)	236, 416, 1010, 1088
AluI	AGCT	4 cut(s)	236, 416, 1010, 1088
Alw26I	GTCTC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	1038
ApeKI	GCWGC	3 cut(s)	437, 440, 610
ApoI	RAATTY	2 cut(s)	645, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	3 cut(s)	221, 793, 892
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	1038
AsuHPI	GGTGA	3 cut(s)	536, 761, 1034
AsuII	TTCGAA	1 cut(s)	1052
BaeGI	GKGCMC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	575, 1041
BbvCI	CCTCAGC	1 cut(s)	1089
BbvI	GCAGC	3 cut(s)	449, 452, 622
BccI	CCATC	2 cut(s)	119, 716
BciT130I	CCWGG	3 cut(s)	188, 392, 468
BciVI	GTATCC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	791
BfaI	CTAG	3 cut(s)	111, 792, 1028
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	438, 441, 611
BlsI	GCNGC	3 cut(s)	439, 442, 612
Bme1390I	CCNGG	3 cut(s)	188, 392, 468
BmgT120I	GGNCC	1 cut(s)	1038
BmiI	GGNNCC	2 cut(s)	130, 185
BmrFI	CCNGG	3 cut(s)	188, 392, 468
BmsI	GCATC	7 cut(s)	424, 484, 625, 820, 968, 982, 1004
BpiI	GAAGAC	2 cut(s)	575, 1041
BpmI	CTGGAG	2 cut(s)	190, 209
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu14I	TTCGAA	1 cut(s)	1052
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	390, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 334, 367
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	3 cut(s)	188, 392, 468
BseDI	CCNNGG	2 cut(s)	390, 963
BseGI	GGATG	3 cut(s)	685, 835, 959
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	175, 334, 367
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	4 cut(s)	131, 294, 522, 1080
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	449, 452, 622
BsgI	GTGCAG	1 cut(s)	955
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	1040
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	175, 334, 367
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	1040
Bsp119I	TTCGAA	1 cut(s)	1052
Bsp1286I	GDGCHC	2 cut(s)	133, 766
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	169, 827
BspANI	GGCC	1 cut(s)	1040
BspCNI	CTCAG	4 cut(s)	132, 295, 523, 1081
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	130, 185
BspT104I	TTCGAA	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	390, 963
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	963
Bst2UI	CCWGG	3 cut(s)	188, 392, 468
Bst4CI	ACNGT	1 cut(s)	1082
Bst6I	CTCTTC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	1052
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	5 cut(s)	140, 303, 531, 767, 1089
BstF5I	GGATG	3 cut(s)	685, 835, 959
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 128, 437
BstNI	CCWGG	3 cut(s)	188, 392, 468
BstSCI	CCNGG	3 cut(s)	186, 390, 466
BstSLI	GKGCMC	1 cut(s)	766
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	449, 452, 622
BstV2I	GAAGAC	2 cut(s)	575, 1041
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	1040
BtsCI	GGATG	3 cut(s)	685, 835, 959
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	1038
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	2 cut(s)	94, 614
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	140, 303, 531, 767, 1089
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	963
Eco24I	GRGCYC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	903
EcoRII	CCWGG	3 cut(s)	186, 390, 466
EcoRV	GATATC	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	963
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	963
FaeI	CATG	2 cut(s)	97, 617
FaiI	YATR	4 cut(s)	95, 584, 615, 782
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	93, 613
Fnu4HI	GCNGC	3 cut(s)	438, 441, 611
FokI	GGATG	3 cut(s)	692, 842, 946
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	3 cut(s)	438, 441, 611
FspBI	CTAG	3 cut(s)	111, 792, 1028
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	438, 441, 611
GsuI	CTGGAG	2 cut(s)	190, 209
HaeIII	GGCC	1 cut(s)	1040
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	97, 617
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	7 cut(s)	142, 240, 263, 527, 587, 893, 926
HphI	GGTGA	3 cut(s)	536, 761, 1034
Hpy166II	GTNNAC	3 cut(s)	161, 328, 1025
Hpy188I	TCNGA	9 cut(s)	141, 153, 232, 304, 457, 532, 736, 823, 883
Hpy188III	TCNNGA	5 cut(s)	146, 207, 244, 798, 814
Hpy8I	GTNNAC	3 cut(s)	161, 328, 1025
HpyAV	CCTTC	8 cut(s)	54, 59, 148, 253, 367, 544, 617, 878
HpyCH4III	ACNGT	1 cut(s)	1082
HpyCH4V	TGCA	6 cut(s)	294, 437, 473, 638, 936, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 128, 437
HpyF3I	CTNAG	5 cut(s)	140, 303, 531, 767, 1089
Hsp92II	CATG	2 cut(s)	97, 617
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	3 cut(s)	449, 452, 622
LweI	GCATC	7 cut(s)	424, 484, 625, 820, 968, 982, 1004
MaeI	CTAG	3 cut(s)	111, 792, 1028
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	8 cut(s)	553, 571, 580, 697, 721, 929, 935, 1041
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	133, 766
MluCI	AATT	5 cut(s)	461, 645, 657, 808, 1015
MlyI	GAGTC	2 cut(s)	151, 257
Mph1103I	ATGCAT	1 cut(s)	997
MroXI	GAANNNNTTC	3 cut(s)	221, 793, 892
MseI	TTAA	3 cut(s)	83, 348, 506
MspA1I	CMGCKG	1 cut(s)	1088
MspR9I	CCNGG	3 cut(s)	188, 392, 468
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	188, 392, 468
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	106, 128, 437
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	97, 617
NlaIV	GGNNCC	2 cut(s)	130, 185
NmeAIII	GCCGAG	1 cut(s)	1066
NsiI	ATGCAT	1 cut(s)	997
NspV	TTCGAA	1 cut(s)	1052
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	3 cut(s)	221, 793, 892
PfeI	GAWTC	5 cut(s)	240, 527, 587, 893, 926
PflFI	GACNNNGTC	1 cut(s)	574
PflMI	CCANNNNNTGG	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	439, 442, 612
PleI	GAGTC	2 cut(s)	150, 257
PpsI	GAGTC	2 cut(s)	150, 257
Psp6I	CCWGG	3 cut(s)	186, 390, 466
PspGI	CCWGG	3 cut(s)	186, 390, 466
PspN4I	GGNNCC	2 cut(s)	130, 185
PspPI	GGNCC	1 cut(s)	1038
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	83, 348, 506
SatI	GCNGC	3 cut(s)	438, 441, 611
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	1038
SchI	GAGTC	2 cut(s)	151, 257
ScrFI	CCNGG	3 cut(s)	188, 392, 468
SduI	GDGCHC	2 cut(s)	133, 766
SetI	ASST	9 cut(s)	215, 238, 359, 418, 537, 748, 1012, 1090, 1095
SfaNI	GCATC	7 cut(s)	424, 484, 625, 820, 968, 982, 1004
SfuI	TTCGAA	1 cut(s)	1052
SpeI	ACTAGT	1 cut(s)	791
Sse9I	AATT	5 cut(s)	461, 645, 657, 808, 1015
SsiI	CCGC	2 cut(s)	169, 827
SspMI	CTAG	3 cut(s)	111, 792, 1028
StyD4I	CCNGG	3 cut(s)	186, 390, 466
StyI	CCWWGG	1 cut(s)	963
TaaI	ACNGT	1 cut(s)	1082
TaqI	TCGA	2 cut(s)	243, 1052
TasI	AATT	5 cut(s)	461, 645, 657, 808, 1015
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	5 cut(s)	240, 527, 587, 893, 926
Tru1I	TTAA	3 cut(s)	83, 348, 506
Tru9I	TTAA	3 cut(s)	83, 348, 506
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	3 cut(s)	437, 440, 610
TspDTI	ATGAA	4 cut(s)	110, 657, 797, 936
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	367
XapI	RAATTY	2 cut(s)	645, 1015
XcmI	CCANNNNNNNNNTGG	2 cut(s)	580, 937
XmnI	GAANNNNTTC	3 cut(s)	221, 793, 892
XspI	CTAG	3 cut(s)	111, 792, 1028
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.