Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008781

Physical Location & Seq

Genomic Coordinates Reverse (-)

18194827 .. 18199358

Gene Structure 4532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCCCAAGTCCCTAACAAGGACGCAGGACACTCTCAGCCCTTCCCTTTTAGCATTCAAGCCTCGCCAACTTCTACTTGCAAACCTAAACCTAGAGATGAAGCAGAGCAACCCCAATAACTCTGCCCCAACCTTAAGTCCTCACCAGAAGGGTCCTCTCCTTTACGCTGTCGCTAGGTTCCTGCAGGGCAATGGGTTCTCTAAAACCCTCAAAAAGTTTCTGTCTGAAGCTCCAATCGAGAAAAATGGGCTGAAGGACTCTTCACTGGATTTGGAAGAGATGTATTGCAAATATTCTGAGATGTGTAATAAGGACAATACAAGTGTTAACAGTCAGAAGGAGAATGGAAATGATCCAGCCCTGGAAAAAATTGCAAAATCTAAGGACAAAAAGAAAAACAGAAAGACTTTTGAGTTACTCAATCAAGGTGACGAACAAGTCTGCACAGAAGAATTAAAGAAGCCTGAACAAGTGGAAGAGGCTGATAAGAATGGCAAGGTGAAAAAGAAAAAGAAGGGCAAGATTGTTTCTGATACTCCTGATGGTGTAGAACAATGTAAACTAGAGCCAATGTCTGTGGCAACTGAAGAAAGTTTAAAAGATCATACATCTGTCAAGGGAAAAGGTGTTGGCGATTCTGAGACAGAGAAGAAATCTAAGGATAAGAAGAAAAAGAAAAACAAGTCAAATGATGATTCTGTTAGTCCTAATGTTGAACAGGGTGGCGTGGAAGCAAAACAGGATGCAAATGGAACTAGTGAAACAATTGCAGATGAAAATCTAGTGGATATAAAGCCTAAAGTTAAGAAGAATAAGAAGGAAAGTTCAGGTGGTGAGGATAAGAAGGTAGTTGCCATGGGAGATGCAAGTGACAGTGTTTTGAAAAAGGAAGATTTCAAATTATCTGATGTTGAGGCTACAAATAATGAGAACAAAAGCTCCAAAAAAAGGAAAAGATTGGATTCTGAAGGAAATGATTCAGAGCCTGGGAAGAGCAAAGAAGATGAAAGTGCTGAGAAGTCTTCCATGCAGAAGAGCATAAAGAAGCAGTGCAATGGTTCAACTGAGGTAACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRP40_C

Protein Analysis

359

Amino Acids

39.59

Weight (kDa)

8.89

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57120 AT5G57120
fragaria_vesca	FvH4_4g06950 FvH4_4g06950
malus_domestica	MD13G1240600.v1.1 MD16G1246300.v1.1
prunus_persica	Prupe.1G073000_v2.0.a1 Prupe.1G073000_v2.0.a1
pyrus_communis	pycom03g00670 pycom13g21240 pycom16g20680
rosa_chinensis	RchiOBHm_Chr4g0398981
rosa_laevigata	RLG00000009303
rosa_multiflora	Rmu_sc0003033.1_g000011 Rmu_sc0011578.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344050
rosa_rugosa	Rorug04G0013300 Rorug04G0013400
rosa_samantha	Rh4AG091300 Rh4BG089000 Rh4CG099600 Rh4DG083900
rosa_wichuraiana	Rw4G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	4 cut(s)	246, 272, 606, 987
AfiI	CCNNNNNNNGG	2 cut(s)	18, 948
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	5 cut(s)	58, 716, 883, 898, 1062
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	2 cut(s)	360, 985
AloI	GAACNNNNNNTCC	2 cut(s)	923, 955
AluBI	AGCT	2 cut(s)	230, 939
AluI	AGCT	2 cut(s)	230, 939
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	986
Asp700I	GAANNNNTTC	1 cut(s)	976
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	134, 440, 511, 845
AvaII	GGWCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	1014
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	2 cut(s)	362, 987
BcoDI	GTCTC	1 cut(s)	635
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	5 cut(s)	92, 174, 563, 756, 782
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	362, 987
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	153, 179
BmrFI	CCNGG	2 cut(s)	362, 987
BmsI	GCATC	2 cut(s)	733, 853
BpiI	GAAGAC	1 cut(s)	1014
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	360, 855, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	923, 953
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 948
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	196, 1060
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	362, 987
BseDI	CCNNGG	3 cut(s)	360, 855, 986
BseGI	GGATG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	18, 948
BseMI	GCAATG	2 cut(s)	196, 1060
BseMII	CTCAG	5 cut(s)	49, 288, 630, 1005, 1056
BseNI	ACTGG	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	18, 948
BsmAI	GTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	352, 601
Bsp19I	CCATGG	1 cut(s)	855
BspCNI	CTCAG	5 cut(s)	48, 289, 631, 1006, 1057
BspLI	GGNNCC	2 cut(s)	153, 179
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	2 cut(s)	986, 1028
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	196, 1060
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	360, 855, 986
BssMI	GATC	2 cut(s)	352, 601
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	362, 987
Bst4CI	ACNGT	2 cut(s)	332, 875
Bst6I	CTCTTC	5 cut(s)	265, 270, 471, 986, 1028
BstAFI	CTTAAG	1 cut(s)	133
BstDEI	CTNAG	7 cut(s)	35, 297, 381, 639, 657, 1014, 1065
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	2 cut(s)	355, 604
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	352, 601
BstNI	CCWGG	2 cut(s)	362, 987
BstSCI	CCNGG	2 cut(s)	360, 985
BstSFI	CTRYAG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	855
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	1055
BtsIMutI	CAGTG	3 cut(s)	263, 880, 1055
CaiI	CAGNNNCTG	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	2 cut(s)	856, 1027
DdeI	CTNAG	7 cut(s)	35, 297, 381, 639, 657, 1014, 1065
DpnI	GATC	2 cut(s)	354, 603
DpnII	GATC	2 cut(s)	352, 601
DraI	TTTAAA	1 cut(s)	597
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	5 cut(s)	265, 270, 471, 986, 1028
EarI	CTCTTC	5 cut(s)	265, 270, 471, 986, 1028
Eco130I	CCWWGG	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	4 cut(s)	246, 272, 606, 987
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	360, 985
EcoT14I	CCWWGG	1 cut(s)	855
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	2 cut(s)	859, 1030
FaiI	YATR	5 cut(s)	606, 791, 857, 1028, 1040
FatI	CATG	2 cut(s)	855, 1026
FokI	GGATG	1 cut(s)	755
FspBI	CTAG	5 cut(s)	92, 174, 563, 756, 782
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	859, 1030
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	5 cut(s)	257, 635, 695, 962, 977
HpaI	GTTAAC	1 cut(s)	328
HphI	GGTGA	4 cut(s)	134, 440, 511, 845
Hpy166II	GTNNAC	2 cut(s)	328, 560
Hpy188I	TCNGA	8 cut(s)	226, 298, 336, 532, 640, 907, 967, 982
Hpy188III	TCNNGA	2 cut(s)	238, 539
Hpy8I	GTNNAC	2 cut(s)	328, 560
HpyAV	CCTTC	8 cut(s)	51, 142, 247, 331, 508, 811, 838, 962
HpyCH4III	ACNGT	2 cut(s)	332, 875
HpyF3I	CTNAG	7 cut(s)	35, 297, 381, 639, 657, 1014, 1065
Hsp92II	CATG	2 cut(s)	859, 1030
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	352, 601
LguI	GCTCTTC	2 cut(s)	986, 1028
LmnI	GCTCC	2 cut(s)	235, 944
LweI	GCATC	2 cut(s)	733, 853
MaeI	CTAG	5 cut(s)	92, 174, 563, 756, 782
MaeIII	GTNAC	4 cut(s)	414, 428, 869, 1069
MalI	GATC	2 cut(s)	354, 603
MboI	GATC	2 cut(s)	352, 601
MfeI	CAATTG	1 cut(s)	765
MluCI	AATT	4 cut(s)	369, 452, 765, 899
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	72, 150, 165, 218, 472, 829, 907, 1060
MroXI	GAANNNNTTC	1 cut(s)	976
MseI	TTAA	6 cut(s)	134, 327, 455, 596, 804, 1078
MspCI	CTTAAG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	362, 987
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	362, 987
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	2 cut(s)	352, 601
NlaIII	CATG	2 cut(s)	859, 1030
NlaIV	GGNNCC	2 cut(s)	153, 179
NmuCI	GTSAC	2 cut(s)	428, 869
PciSI	GCTCTTC	2 cut(s)	986, 1028
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	976
PfeI	GAWTC	4 cut(s)	635, 695, 962, 977
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	360, 985
PspGI	CCWGG	2 cut(s)	360, 985
PspN4I	GGNNCC	2 cut(s)	153, 179
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	986
SapI	GCTCTTC	2 cut(s)	986, 1028
SaqAI	TTAA	6 cut(s)	134, 327, 455, 596, 804, 1078
Sau3AI	GATC	2 cut(s)	352, 601
Sau96I	GGNCC	1 cut(s)	152
SbfI	CCTGCAGG	1 cut(s)	186
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	362, 987
SdaI	CCTGCAGG	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	733, 853
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	755
Sse8387I	CCTGCAGG	1 cut(s)	186
Sse9I	AATT	4 cut(s)	369, 452, 765, 899
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	5 cut(s)	92, 174, 563, 756, 782
StyD4I	CCNGG	2 cut(s)	360, 985
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	2 cut(s)	332, 875
TaqI	TCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	369, 452, 765, 899
TfiI	GAWTC	4 cut(s)	635, 695, 962, 977
Tru1I	TTAA	6 cut(s)	134, 327, 455, 596, 804, 1078
Tru9I	TTAA	6 cut(s)	134, 327, 455, 596, 804, 1078
TscAI	CASTG	3 cut(s)	270, 880, 1055
TseFI	GTSAC	2 cut(s)	428, 869
Tsp45I	GTSAC	2 cut(s)	428, 869
TspDTI	ATGAA	3 cut(s)	113, 789, 1020
TspRI	CASTG	3 cut(s)	270, 880, 1055
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	976
XspI	CTAG	5 cut(s)	92, 174, 563, 756, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.