AT5G57240

protein)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004160
Physical Location & Seq
Forward (+)
23192872 .. 23195476
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57240.3

Sequence Viewer

Length: 1140 bp
ATGAAAAAGCACGTTATGTTGGTGAAGCCTTTCTCGTTGGAAGATGAGAAAGACTCTGAAAACACACCTCCCAATCTCATCCAACGGATCTTAAGCCTCTTCAAAAACGTACGGCCAGGATCCGATCTCACTAATTTTCAGCTTCCACCTCAAATGAACCTAGCGAGATCGCAGCTCCAATGCTACGGCGAGATAGTATACAGTTTCGACGGTCACGATCTACTCGGAGAATGTAGTCGTCGTGACAAACCAATCGAACGGATGAAAGCAATGGTGACGTGGTACATCTCAACACTCCGGCCTTTGATCTTTGGCTTGGCTCCATACAATCCTGTCATCGGCGAAACTCACCACGTGTCCAATGGTCACATTAACGTTCTCGCAGAGCAAATATCGCATCATCCACCAGTTTCTGCTCTTCATGCAACTCACGAGAAAGAAAACGTAGACGTTTTGTTATGTCAATATTTCACGCCTAAATTTCGTGGTGCTTACGTGGACGTTGAGGTGAAGGGTAAAAGAGTGGTGAAACTTCTGAATCACAAAGAGACTTACGAAATGAACCAACCAAAACTTCTCATGACGTTTTTGCCGGCAATGGGAGCTCACTGGGCCGGAAAGATCGTGATAAAGTGTCCGGAGACAGGACTCGGAGCCGAATTGCAGTTACTATCCGATTCTTTTCTCAGTAGATTCACAGGAAACAATAAAAGAGCCATTAAAGGCAAGATCTTTGAATCTTCCTCTAGGAAACAGCTCTATGAAATCTCTGGACACTGGGACAGAACTGTTACCGCGAAAAATACAAAGACTGGACAGCTTGAGGTTATATACAAAGCGAGTGAAAACATTGCAAAGCTCAAAACTCCCATTGTCGAGAACCTGCAGGAGGTGAGTGAGAGCGAGTCGGCGGTGGTGTGGGGTGAGGTGAGTGAAGGAATCGTGACGAACAACTGGGAGAAAGCAAGAGAAGCCAAGAGAGATGTGGAGGAGAAGCAGAGGGAGTCTTTGAGGAAAAGAAAGGCTTCTGGACAATCATGGATTCCAAAACATTTCTCTGTAGCTCGAACTGGTAAGGACTGGGACTGTGTTCCTCTACAGCCTACGGTTCCTCGAGCTCCTATAGTTGTTCCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP

Protein Analysis

379

Amino Acids

42.97

Weight (kDa)

9.15

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 34 - 381 2.5e-46 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 891
AccI GTMKAC 2 cut(s) 198, 447
AccII CGCG 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 2 cut(s) 795, 911
AclI AACGTT 1 cut(s) 375
AclWI GGATC 3 cut(s) 95, 114, 127
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 479
AcvI CACGTG 1 cut(s) 355
AdeI CACNNNGTG 1 cut(s) 355
AfaI GTAC 2 cut(s) 111, 284
AfiI CCNNNNNNNGG 4 cut(s) 338, 599, 644, 889
AflII CTTAAG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 103, 737
AjiI CACGTC 1 cut(s) 279
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 8 cut(s) 142, 175, 605, 757, 820, 859, 1064, 1118
AluI AGCT 8 cut(s) 142, 175, 605, 757, 820, 859, 1064, 1118
Alw21I GWGCWC 2 cut(s) 607, 1120
Alw26I GTCTC 2 cut(s) 542, 635
AlwI GGATC 3 cut(s) 95, 114, 127
AlwNI CAGNNNCTG 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 1113
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 3 cut(s) 113, 299, 612
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 2 cut(s) 29, 1024
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 8 cut(s) 34, 286, 341, 520, 538, 904, 935, 940
AvaI CYCGRG 1 cut(s) 1113
BamHI GGATCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 607, 1120
BauI CACGAG 1 cut(s) 431
BbrPI CACGTG 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 607, 1120
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 2 cut(s) 128, 202
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 542, 635
BfaI CTAG 2 cut(s) 161, 747
BfmI CTRYAG 4 cut(s) 884, 1059, 1097, 1122
BfrI CTTAAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 891
BglII AGATCT 1 cut(s) 729
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 1113
BmgBI CACGTC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 4 cut(s) 121, 321, 655, 1110
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 4 cut(s) 619, 787, 964, 1090
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 4 cut(s) 619, 787, 964, 1090
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpuEI CTTGAG 1 cut(s) 842
BsaAI YACGTR 2 cut(s) 355, 496
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 599, 644, 889
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 7 cut(s) 407, 614, 782, 817, 959, 1075, 1085
Bse3DI GCAATG 3 cut(s) 276, 603, 849
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 78, 267, 400
BseLI CCNNNNNNNGG 4 cut(s) 338, 599, 644, 889
BseMI GCAATG 3 cut(s) 276, 603, 849
BseMII CTCAG 1 cut(s) 700
BseNI ACTGG 7 cut(s) 407, 614, 782, 817, 959, 1075, 1085
BseRI GAGGAG 1 cut(s) 1004
BseXI GCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 3 cut(s) 115, 301, 614
BsiHKAI GWGCWC 2 cut(s) 607, 1120
BsiHKCI CYCGRG 1 cut(s) 1113
BsiSI CCGG 4 cut(s) 298, 593, 615, 638
BsiWI CGTACG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 794, 1097
BslI CCNNNNNNNGG 4 cut(s) 338, 599, 644, 889
BsmAI GTCTC 2 cut(s) 542, 635
BsmFI GGGAC 2 cut(s) 794, 1097
BsnI GGCC 3 cut(s) 115, 301, 614
BsoBI CYCGRG 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 607, 1120
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
BspACI CCGC 2 cut(s) 795, 911
BspANI GGCC 3 cut(s) 115, 301, 614
BspCNI CTCAG 1 cut(s) 699
BspEI TCCGGA 1 cut(s) 637
BspFNI CGCG 1 cut(s) 797
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 4 cut(s) 121, 321, 655, 1110
BspMAI CTGCAG 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 891
BspPI GGATC 3 cut(s) 95, 114, 127
BspQI GCTCTTC 1 cut(s) 423
BspTI CTTAAG 1 cut(s) 91
BsrDI GCAATG 3 cut(s) 276, 603, 849
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 7 cut(s) 407, 614, 782, 817, 959, 1075, 1085
BssAI RCCGGY 1 cut(s) 592
BssMI GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
BssNAI GTATAC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 5 cut(s) 203, 212, 790, 1088, 1108
Bst6I CTCTTC 2 cut(s) 104, 423
BstAFI CTTAAG 1 cut(s) 91
BstBAI YACGTR 2 cut(s) 355, 496
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 1 cut(s) 686
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 3 cut(s) 78, 267, 400
BstFNI CGCG 1 cut(s) 797
BstKTI GATC 8 cut(s) 90, 122, 127, 170, 220, 309, 624, 732
BstMAI GTCTC 2 cut(s) 542, 635
BstMBI GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
BstMWI GCNNNNNNNGC 5 cut(s) 394, 422, 602, 611, 971
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 4 cut(s) 884, 1059, 1097, 1122
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 3 cut(s) 87, 119, 729
BstYI RGATCY 3 cut(s) 87, 119, 729
BstZ17I GTATAC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 115, 301, 614
BtrI CACGTC 1 cut(s) 279
BtsCI GGATG 3 cut(s) 78, 267, 400
BtsIMutI CAGTG 2 cut(s) 607, 775
BveI ACCTGC 1 cut(s) 891
Cac8I GCNNGC 1 cut(s) 594
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 110, 283
CviAII CATG 3 cut(s) 422, 580, 1038
CviQI GTAC 2 cut(s) 110, 283
DdeI CTNAG 1 cut(s) 686
DpnI GATC 8 cut(s) 89, 121, 126, 169, 219, 308, 623, 731
DpnII GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
DraIII CACNNNGTG 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 104, 423
EarI CTCTTC 2 cut(s) 104, 423
Ecl136II GAGCTC 2 cut(s) 605, 1118
Eco24I GRGCYC 2 cut(s) 607, 1120
Eco53kI GAGCTC 2 cut(s) 605, 1118
Eco72I CACGTG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 1113
EcoICRI GAGCTC 2 cut(s) 605, 1118
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 2 cut(s) 607, 1120
FaeI CATG 3 cut(s) 425, 583, 1041
FalI AAGNNNNNCTT 2 cut(s) 1009, 1041
FaqI GGGAC 2 cut(s) 794, 1097
FatI CATG 3 cut(s) 421, 579, 1037
FblI GTMKAC 2 cut(s) 198, 447
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 3 cut(s) 65, 274, 387
FriOI GRGCYC 2 cut(s) 607, 1120
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 2 cut(s) 161, 747
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 3 cut(s) 115, 301, 614
HapII CCGG 4 cut(s) 298, 593, 615, 638
Hin1II CATG 3 cut(s) 425, 583, 1041
HpaII CCGG 4 cut(s) 298, 593, 615, 638
HphI GGTGA 8 cut(s) 34, 286, 341, 520, 538, 904, 935, 940
Hpy166II GTNNAC 3 cut(s) 199, 448, 499
Hpy188I TCNGA 7 cut(s) 58, 124, 227, 537, 653, 676, 1139
Hpy8I GTNNAC 3 cut(s) 199, 448, 499
Hpy99I CGWCG 2 cut(s) 212, 243
HpyAV CCTTC 2 cut(s) 505, 929
HpyCH4III ACNGT 5 cut(s) 203, 212, 790, 1088, 1108
HpyCH4V TGCA 4 cut(s) 425, 664, 854, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 422, 602, 611, 971
HpyF3I CTNAG 1 cut(s) 686
Hsp92II CATG 3 cut(s) 425, 583, 1041
Kpn2I TCCGGA 1 cut(s) 637
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
Kzo9I GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 5 cut(s) 180, 325, 602, 653, 1123
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 406
MaeI CTAG 2 cut(s) 161, 747
MaeIII GTNAC 7 cut(s) 212, 242, 274, 365, 666, 790, 943
MalI GATC 8 cut(s) 89, 121, 126, 169, 219, 308, 623, 731
MboI GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
MboII GAAGA 4 cut(s) 53, 91, 410, 732
MflI RGATCY 3 cut(s) 87, 119, 729
MhlI GDGCHC 2 cut(s) 607, 1120
MluCI AATT 3 cut(s) 133, 479, 659
MlyI GAGTC 4 cut(s) 47, 642, 914, 1013
MmeI TCCRAC 2 cut(s) 18, 106
MroI TCCGGA 1 cut(s) 637
MroNI GCCGGC 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 29, 1024
MseI TTAA 3 cut(s) 92, 372, 720
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 4 cut(s) 298, 593, 615, 638
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 5 cut(s) 394, 422, 602, 611, 971
NaeI GCCGGC 1 cut(s) 594
NdeII GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 3 cut(s) 425, 583, 1041
NlaIV GGNNCC 4 cut(s) 121, 321, 655, 1110
NmuCI GTSAC 5 cut(s) 212, 242, 274, 365, 943
PaeR7I CTCGAG 1 cut(s) 1113
PagI TCATGA 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 594
PdmI GAANNNNTTC 2 cut(s) 29, 1024
PfeI GAWTC 6 cut(s) 538, 677, 693, 737, 939, 1042
Pfl23II CGTACG 1 cut(s) 109
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 4 cut(s) 47, 642, 913, 1012
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
PpsI GAGTC 4 cut(s) 47, 642, 913, 1012
Ppu21I YACGTR 2 cut(s) 355, 496
Psp124BI GAGCTC 2 cut(s) 607, 1120
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 115
PspCI CACGTG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 115
PspLI CGTACG 1 cut(s) 109
PspN4I GGNNCC 4 cut(s) 121, 321, 655, 1110
PspPI GGNCC 1 cut(s) 612
PspXI VCTCGAGB 1 cut(s) 1113
PstI CTGCAG 1 cut(s) 888
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 3 cut(s) 87, 119, 729
RsaI GTAC 2 cut(s) 111, 284
RsaNI GTAC 2 cut(s) 110, 283
SacI GAGCTC 2 cut(s) 607, 1120
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 3 cut(s) 92, 372, 720
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 8 cut(s) 87, 119, 124, 167, 217, 306, 621, 729
Sau96I GGNCC 1 cut(s) 612
SbfI CCTGCAGG 1 cut(s) 888
SchI GAGTC 4 cut(s) 47, 642, 914, 1013
ScrFI CCNGG 1 cut(s) 117
SdaI CCTGCAGG 1 cut(s) 888
SduI GDGCHC 2 cut(s) 607, 1120
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 4 cut(s) 884, 1059, 1097, 1122
Sfr274I CTCGAG 1 cut(s) 1113
SlaI CTCGAG 1 cut(s) 1113
SmlI CTYRAG 3 cut(s) 91, 821, 1113
SmoI CTYRAG 3 cut(s) 91, 821, 1113
Sse8387I CCTGCAGG 1 cut(s) 888
Sse9I AATT 3 cut(s) 133, 479, 659
SsiI CCGC 2 cut(s) 795, 911
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 161, 747
SstI GAGCTC 2 cut(s) 607, 1120
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 5 cut(s) 203, 212, 790, 1088, 1108
TaqI TCGA 5 cut(s) 207, 255, 876, 1066, 1114
TasI AATT 3 cut(s) 133, 479, 659
TfiI GAWTC 6 cut(s) 538, 677, 693, 737, 939, 1042
Tru1I TTAA 3 cut(s) 92, 372, 720
Tru9I TTAA 3 cut(s) 92, 372, 720
TscAI CASTG 2 cut(s) 614, 782
TseFI GTSAC 5 cut(s) 212, 242, 274, 365, 943
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 5 cut(s) 212, 242, 274, 365, 943
TspDTI ATGAA 6 cut(s) 17, 170, 278, 410, 575, 777
TspGWI ACGGA 2 cut(s) 100, 274
TspRI CASTG 2 cut(s) 614, 782
Vha464I CTTAAG 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 2 cut(s) 359, 982
XhoI CTCGAG 1 cut(s) 1113
XmiI GTMKAC 2 cut(s) 198, 447
XmnI GAANNNNTTC 2 cut(s) 29, 1024
XspI CTAG 2 cut(s) 161, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.