Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014676.1

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Reverse (-)

61840 .. 66218

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014676.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggtggatcggcttttccatggtgtgagatccattaactttaatgggtcccatatccaatcagaaacaggtcgccccaacgcggctccctgctcccacttggtctcagaagaggagaagacgagagttgttttcttgacaaagccattgtcattagaaagcgaatcgaatggtgattacagagctcctaatatacttaagcgcgtcctaagcctattcacaaatgtacgcccaggatcagatctcactcgcttccagctgtcacctctctttaacataccaaagtcacagctccagtgtttcggcgaatgtgtgtactgcattaataatgatatgttagggaattgcaacaaaggggaaaccgccaaggacaggttcacagccgttgtatcgtggagtatttctactttgcgtcctatgatttttggaattgctccatacaaccccattcttggagaaactcatcatgcatcaagggggaatctcaatgttctacttgagcagatttcacatcatccaccagttactgcgatgcatgcaactgatgagaaatcaaacgttgaaatgatatggtgtaaccatcctactcccaaattctatggtacttccgtggaaactgaggtgcatggaaaaagggagctgaagctcctgaatcatggagaaacttatgaaatgaacgccccaaaacttttaatcaaattcctcccagtaccttgggttaattgggttggtgaaaatagaatccgctgtcatgagaccggccttgaagctgagttatactatggaagcagttccctttttggcctcaggggaaatcctagatcagtcaagggaaagatcttcgactcatcatccttggagattctttatgagatagatggtcaatgggatagaactgtcaaattgaaggacgttagcagtgggaaagaaacagttatatacaatgcaaaagaatccatctcaggactcaaatctcctgttgttacagatccgaagggagtctggccgagtgagtcagctgtgatctggggtttgttaagccaatctatcctgaacaaggactggggaagagcaagagaagaaaagaaagaagttgaagaaaaacaaagggagctatttagagaaagagaagccagaggtgaaacttgggctcctaagcatttcattgtgaactatagcaaagaaggtggatgggattgctcacccattcacaagtgggtaccaccagcccccatatccgtacccatctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

417

Amino Acids

47.06

Weight (kDa)

7.65

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1219
AccB1I	GGYRCC	1 cut(s)	1219
AccII	CGCG	2 cut(s)	83, 204
AciI	CCGC	3 cut(s)	83, 363, 745
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	4 cut(s)	15, 24, 244, 983
AcoI	YGGCCR	1 cut(s)	1004
AcsI	RAATTY	2 cut(s)	593, 698
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	6 cut(s)	228, 317, 604, 711, 1221, 1242
AfiI	CCNNNNNNNGG	4 cut(s)	82, 372, 452, 1057
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	563, 767, 907, 1097
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	8 cut(s)	185, 259, 292, 640, 646, 770, 1019, 1114
AluI	AGCT	8 cut(s)	185, 259, 292, 640, 646, 770, 1019, 1114
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	109, 749
AlwI	GGATC	4 cut(s)	15, 24, 244, 983
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	760, 802, 1004
ApoI	RAATTY	2 cut(s)	593, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	790
Asp718I	GGTACC	1 cut(s)	1219
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	5 cut(s)	185, 255, 743, 1151, 1194
AvaII	GGWCC	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	806
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BanI	GGYRCC	1 cut(s)	1219
BanII	GRGCYC	2 cut(s)	187, 1153
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	187
BccI	CCATC	5 cut(s)	588, 872, 965, 1185, 1253
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	109, 749
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	1174
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	2 cut(s)	241, 837
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	5 cut(s)	49, 50, 87, 1152, 1221
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	2 cut(s)	701, 1072
BmsI	GCATC	2 cut(s)	479, 522
BmuI	ACTGGG	2 cut(s)	701, 1072
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	2 cut(s)	209, 1155
BpuEI	CTTGAG	1 cut(s)	518
BsaI	GGTCTC	2 cut(s)	109, 749
BsaJI	CCNNGG	6 cut(s)	19, 232, 366, 609, 713, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	1135, 1165
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 372, 452, 1057
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	4 cut(s)	295, 521, 707, 1067
Bse21I	CCTNAGG	1 cut(s)	806
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	6 cut(s)	19, 232, 366, 609, 713, 855
BseGI	GGATG	4 cut(s)	514, 580, 851, 1196
BseLI	CCNNNNNNNGG	4 cut(s)	82, 372, 452, 1057
BseMII	CTCAG	5 cut(s)	120, 609, 762, 820, 975
BseNI	ACTGG	4 cut(s)	295, 521, 707, 1067
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	83, 204
BshFI	GGCC	3 cut(s)	762, 804, 1006
BshNI	GGYRCC	1 cut(s)	1219
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	4 cut(s)	82, 372, 452, 1057
BsmAI	GTCTC	2 cut(s)	109, 749
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	762, 804, 1006
Bso31I	GGTCTC	2 cut(s)	109, 749
Bsp1286I	GDGCHC	2 cut(s)	187, 1153
Bsp143I	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	3 cut(s)	83, 363, 745
BspANI	GGCC	3 cut(s)	762, 804, 1006
BspCNI	CTCAG	5 cut(s)	119, 610, 763, 819, 974
BspFNI	CGCG	2 cut(s)	83, 204
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	5 cut(s)	49, 50, 87, 1152, 1221
BspPI	GGATC	4 cut(s)	15, 24, 244, 983
BspQI	GCTCTTC	1 cut(s)	1063
BspT107I	GGYRCC	1 cut(s)	1219
BspTI	CTTAAG	1 cut(s)	197
BspTNI	GGTCTC	2 cut(s)	109, 749
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	4 cut(s)	295, 521, 707, 1067
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	6 cut(s)	19, 232, 366, 609, 713, 855
BssMI	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
BssT1I	CCWWGG	4 cut(s)	19, 366, 713, 855
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	898, 934
Bst6I	CTCTTC	2 cut(s)	105, 1063
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	7 cut(s)	106, 209, 618, 771, 806, 961, 1155
BstDSI	CCRYGG	2 cut(s)	19, 609
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstF5I	GGATG	4 cut(s)	514, 580, 851, 1196
BstFNI	CGCG	2 cut(s)	83, 204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	8 cut(s)	10, 32, 239, 244, 824, 840, 991, 1026
BstMAI	GTCTC	2 cut(s)	109, 749
BstMBI	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 536
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	1174
BstUI	CGCG	2 cut(s)	83, 204
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	4 cut(s)	29, 241, 837, 988
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	4 cut(s)	29, 241, 837, 988
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	3 cut(s)	762, 804, 1006
BtgI	CCRYGG	2 cut(s)	19, 609
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	4 cut(s)	514, 580, 851, 1196
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	2 cut(s)	302, 925
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	2 cut(s)	193, 401
Csp6I	GTAC	6 cut(s)	227, 316, 603, 710, 1220, 1241
CspCI	CAANNNNNGTGG	2 cut(s)	1168, 1203
CviAII	CATG	6 cut(s)	20, 467, 536, 626, 656, 752
CviQI	GTAC	6 cut(s)	227, 316, 603, 710, 1220, 1241
DdeI	CTNAG	7 cut(s)	106, 209, 618, 771, 806, 961, 1155
DpnI	GATC	8 cut(s)	9, 31, 238, 243, 823, 839, 990, 1025
DpnII	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
EaeI	YGGCCR	1 cut(s)	1004
Eam1104I	CTCTTC	2 cut(s)	105, 1063
EarI	CTCTTC	2 cut(s)	105, 1063
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	4 cut(s)	19, 366, 713, 855
Eco24I	GRGCYC	2 cut(s)	187, 1153
Eco31I	GGTCTC	2 cut(s)	109, 749
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	4 cut(s)	19, 366, 713, 855
EcoT22I	ATGCAT	2 cut(s)	472, 537
EcoT38I	GRGCYC	2 cut(s)	187, 1153
ErhI	CCWWGG	4 cut(s)	19, 366, 713, 855
FaeI	CATG	6 cut(s)	23, 470, 539, 629, 659, 755
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	6 cut(s)	19, 466, 535, 625, 655, 751
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	4 cut(s)	501, 567, 838, 1203
FriOI	GRGCYC	2 cut(s)	187, 1153
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	762, 804, 1006
HapII	CCGG	1 cut(s)	759
HgaI	GACGC	2 cut(s)	193, 401
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	6 cut(s)	23, 470, 539, 629, 659, 755
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	5 cut(s)	185, 255, 743, 1151, 1194
Hpy166II	GTNNAC	3 cut(s)	316, 378, 1171
Hpy188I	TCNGA	4 cut(s)	64, 109, 241, 993
Hpy188III	TCNNGA	5 cut(s)	136, 649, 752, 963, 1051
Hpy8I	GTNNAC	3 cut(s)	316, 378, 1171
HpyAV	CCTTC	3 cut(s)	901, 988, 1178
HpyCH4III	ACNGT	2 cut(s)	898, 934
HpyCH4IV	ACGT	2 cut(s)	558, 912
HpyCH4V	TGCA	7 cut(s)	321, 348, 470, 535, 539, 625, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 536
HpyF3I	CTNAG	7 cut(s)	106, 209, 618, 771, 806, 961, 1155
HpySE526I	ACGT	2 cut(s)	558, 912
Hsp92II	CATG	6 cut(s)	23, 470, 539, 629, 659, 755
HspAI	GCGC	1 cut(s)	202
KflI	GGGWCCC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	1223
Kzo9I	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
LguI	GCTCTTC	1 cut(s)	1063
LmnI	GCTCC	9 cut(s)	91, 98, 190, 297, 439, 637, 651, 1111, 1156
LweI	GCATC	2 cut(s)	479, 522
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	2 cut(s)	558, 912
MaeIII	GTNAC	5 cut(s)	261, 285, 523, 575, 982
MalI	GATC	8 cut(s)	9, 31, 238, 243, 823, 839, 990, 1025
MboI	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
MboII	GAAGA	6 cut(s)	122, 130, 832, 1080, 1091, 1109
MflI	RGATCY	4 cut(s)	29, 241, 837, 988
MhlI	GDGCHC	2 cut(s)	187, 1153
MluCI	AATT	6 cut(s)	343, 429, 593, 698, 721, 902
MlyI	GAGTC	4 cut(s)	839, 960, 1008, 1022
MnlI	CCTC	6 cut(s)	106, 276, 613, 713, 815, 1130
Mph1103I	ATGCAT	2 cut(s)	472, 537
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	8 cut(s)	36, 42, 198, 273, 324, 692, 720, 1037
MspA1I	CMGCKG	3 cut(s)	259, 747, 1019
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	2 cut(s)	83, 204
MwoI	GCNNNNNNNGC	2 cut(s)	210, 536
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
NlaIII	CATG	6 cut(s)	23, 470, 539, 629, 659, 755
NlaIV	GGNNCC	5 cut(s)	49, 50, 87, 1152, 1221
NmeAIII	GCCGAG	1 cut(s)	1032
NmuCI	GTSAC	2 cut(s)	261, 285
NsiI	ATGCAT	2 cut(s)	472, 537
NspI	RCATGY	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	539
PagI	TCATGA	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	1063
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	6 cut(s)	164, 481, 652, 741, 862, 953
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	4 cut(s)	839, 960, 1007, 1021
PpsI	GAGTC	4 cut(s)	839, 960, 1007, 1021
PpuMI	RGGWCCY	1 cut(s)	48
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	5 cut(s)	49, 50, 87, 1152, 1221
PspPI	GGNCC	1 cut(s)	48
PspPPI	RGGWCCY	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	4 cut(s)	29, 241, 837, 988
PvuII	CAGCTG	2 cut(s)	259, 1019
RsaI	GTAC	6 cut(s)	228, 317, 604, 711, 1221, 1242
RsaNI	GTAC	6 cut(s)	227, 316, 603, 710, 1220, 1241
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	1063
SaqAI	TTAA	8 cut(s)	36, 42, 198, 273, 324, 692, 720, 1037
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	8 cut(s)	7, 29, 236, 241, 821, 837, 988, 1023
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	4 cut(s)	839, 960, 1008, 1022
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	187, 1153
SfaNI	GCATC	2 cut(s)	479, 522
SfcI	CTRYAG	1 cut(s)	1174
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	197, 497
SmoI	CTYRAG	2 cut(s)	197, 497
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	6 cut(s)	343, 429, 593, 698, 721, 902
SsiI	CCGC	3 cut(s)	83, 363, 745
SspMI	CTAG	1 cut(s)	819
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	4 cut(s)	19, 366, 713, 855
TaaI	ACNGT	2 cut(s)	898, 934
TaiI	ACGT	2 cut(s)	561, 915
TaqI	TCGA	2 cut(s)	167, 843
TasI	AATT	6 cut(s)	343, 429, 593, 698, 721, 902
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	6 cut(s)	164, 481, 652, 741, 862, 953
Tru1I	TTAA	8 cut(s)	36, 42, 198, 273, 324, 692, 720, 1037
Tru9I	TTAA	8 cut(s)	36, 42, 198, 273, 324, 692, 720, 1037
TscAI	CASTG	2 cut(s)	302, 925
TseFI	GTSAC	2 cut(s)	261, 285
Tsp45I	GTSAC	2 cut(s)	261, 285
TspDTI	ATGAA	3 cut(s)	684, 689, 1153
TspGWI	ACGGA	2 cut(s)	598, 1228
TspRI	CASTG	2 cut(s)	302, 925
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	2 cut(s)	593, 698
XceI	RCATGY	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	2 cut(s)	472, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.