Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

14848613 .. 14856703

Gene Structure 8091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCGATTCAATTTGGAGTCTTTTGTGGTGACCACATGTGACATTGTTTCAATCAAACAAAGACGGCAAATAAACCCAACACGTTACTACAAAGTCTCAGAAGAGGAGAAGACGAGAGTTGTTTTCTTGACAAAGCCATTGTCATTAGAAAGCGAATCGAATGGTGATTACAGAGCTCCTAATATACTTACGCGCGTCCTAAGCCTATTCAGAAATGTACGGCCAGGATCAGATCTCACTCGCTTCCAGGCAAGGAATTGCAACAAAGGGGAAACCCCCAAGGACAGGTTCACAGCCGTTGTATCGTGGAGTATTTCTACTTTGCGTCCTATGATTTTTGGAATTGCTCCATACAACCCCATTCTTGGAGAAACTCATCATGCGTCAAGGGGGAACCTCAATGTTCTACTTGAGCAGATTTCACATCATCCACCAGTTACTGCGATGCATGCAACTGATGAGAAATCAAACATTGAGATGATATGGTGTAATCATCCGACTCCCAAATTCTATGTCCTCATCAAGAAACATGTTGCAGGTACTTCCGTGGAAACTGAGGTGCATGGAAAAAGGGAGCTGAAGCTCCTGAATCATGGAGAAACTTATGAAATGAATGCCCCAAAACTTTTAATCAAATTCCTCCCAGTACCTTGGGTTAATTGGGTTGGTGAAAATAGAATCCGCTGTCATGAGACCGGCCTTGAAGCTGAGTTATACTATGGAAGCAGTTCCCTTTTTGGCCTTAGGGGAAATCCTAGATCAGTCAAGGGAAAGATCTTCGACTCATCATCCTCGGAGATTCTTTATGAGATAGATGGTCAATGGGATAGAACTGTCAAATTGAAGGACGTTAGCAGTGGGAAAGAAACAGTTATATACAATGCAAAAGAAGCCATCTCAGGACTCAAATCTCCTGTTGTTACAGATCTGAAGGGAGTCTGGCCGAGTGAGTCAGCTGTGATCTGGGGTTTGTTAAGCCAATCTATTCTGAACAAGGACTGGGGAAGAGCAAGAGAAGAAAAGAAAGAAGTTGAAGAAAAACAAAGGGAGCTATTTAGAGAAAGAGAAGCCAGAGGTGAAACTTGGGCTCCTAAGCATTTCATTGTGAACTACAGCAAAGAAGGTGGATGGGATTGCTCACCCATTCACAAGTGGGTACCACCAGCCCCCATATCTGTACCCATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

396

Amino Acids

45.15

Weight (kDa)

9.08

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	89 - 294	7.3e-35	Oxysterol-binding protein
Oxysterol_BP	PF01237	329 - 370	3e-06	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	527
Acc65I	GGTACC	1 cut(s)	1156
AccB1I	GGYRCC	1 cut(s)	1156
AccII	CGCG	2 cut(s)	193, 195
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	2 cut(s)	221, 941
AcsI	RAATTY	2 cut(s)	506, 635
AcuI	CTGAAG	2 cut(s)	599, 950
AfaI	GTAC	5 cut(s)	219, 541, 648, 1158, 1179
AfiI	CCNNNNNNNGG	2 cut(s)	285, 365
AflIII	ACRYGT	3 cut(s)	35, 80, 529
AgsI	TTSAA	5 cut(s)	10, 51, 704, 844, 1034
AjnI	CCWGG	2 cut(s)	223, 246
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	6 cut(s)	176, 577, 583, 707, 956, 1051
AluI	AGCT	6 cut(s)	176, 577, 583, 707, 956, 1051
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	100, 686
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	221, 697, 739, 941
ApoI	RAATTY	2 cut(s)	506, 635
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 157, 498, 530
Asp700I	GAANNNNTTC	1 cut(s)	727
Asp718I	GGTACC	1 cut(s)	1156
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	5 cut(s)	40, 176, 680, 1088, 1131
AxyI	CCTNAGG	1 cut(s)	743
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanI	GGYRCC	1 cut(s)	1156
BanII	GRGCYC	2 cut(s)	178, 1090
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	178
BccI	CCATC	4 cut(s)	809, 902, 1122, 1190
BceAI	ACGGC	3 cut(s)	80, 236, 281
BciT130I	CCWGG	2 cut(s)	225, 248
BcoDI	GTCTC	2 cut(s)	100, 686
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	1111
BfuAI	ACCTGC	1 cut(s)	527
BglII	AGATCT	3 cut(s)	232, 774, 925
Bme1390I	CCNGG	2 cut(s)	225, 248
BmiI	GGNNCC	3 cut(s)	395, 1089, 1158
BmrFI	CCNGG	2 cut(s)	225, 248
BmrI	ACTGGG	2 cut(s)	638, 1009
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	2 cut(s)	638, 1009
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	200, 1092
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	4 cut(s)	279, 546, 650, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 365
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	434, 644, 1004
Bse21I	CCTNAGG	1 cut(s)	743
BseBI	CCWGG	2 cut(s)	225, 248
BseDI	CCNNGG	4 cut(s)	279, 546, 650, 792
BseGI	GGATG	4 cut(s)	427, 493, 788, 1133
BseLI	CCNNNNNNNGG	2 cut(s)	285, 365
BseMII	CTCAG	4 cut(s)	111, 546, 699, 912
BseNI	ACTGG	3 cut(s)	434, 644, 1004
BseRI	GAGGAG	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	193, 195
BshFI	GGCC	4 cut(s)	223, 699, 741, 943
BshNI	GGYRCC	1 cut(s)	1156
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	696
BslI	CCNNNNNNNGG	2 cut(s)	285, 365
BsmAI	GTCTC	2 cut(s)	100, 686
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	4 cut(s)	223, 699, 741, 943
Bso31I	GGTCTC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	178, 1090
Bsp143I	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
BspACI	CCGC	1 cut(s)	682
BspANI	GGCC	4 cut(s)	223, 699, 741, 943
BspCNI	CTCAG	4 cut(s)	110, 547, 700, 911
BspFNI	CGCG	2 cut(s)	193, 195
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	395, 1089, 1158
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	1000
BspT107I	GGYRCC	1 cut(s)	1156
BspTNI	GGTCTC	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	434, 644, 1004
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	4 cut(s)	279, 546, 650, 792
BssMI	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
BssT1I	CCWWGG	2 cut(s)	279, 650
Bst2UI	CCWGG	2 cut(s)	225, 248
Bst4CI	ACNGT	2 cut(s)	835, 871
Bst6I	CTCTTC	2 cut(s)	96, 1000
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	7 cut(s)	97, 200, 555, 708, 743, 898, 1092
BstDSI	CCRYGG	1 cut(s)	546
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	4 cut(s)	427, 493, 788, 1133
BstFNI	CGCG	2 cut(s)	193, 195
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	6 cut(s)	230, 235, 761, 777, 928, 963
BstMAI	GTCTC	2 cut(s)	100, 686
BstMBI	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 449, 890
BstNI	CCWGG	2 cut(s)	225, 248
BstNSI	RCATGY	3 cut(s)	39, 452, 533
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	223, 246
BstSFI	CTRYAG	1 cut(s)	1111
BstUI	CGCG	2 cut(s)	193, 195
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	3 cut(s)	232, 774, 925
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	3 cut(s)	232, 774, 925
Bsu36I	CCTNAGG	1 cut(s)	743
BsuRI	GGCC	4 cut(s)	223, 699, 741, 943
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	4 cut(s)	427, 493, 788, 1133
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	695
CseI	GACGC	3 cut(s)	184, 314, 372
Csp6I	GTAC	5 cut(s)	218, 540, 647, 1157, 1178
CspCI	CAANNNNNGTGG	2 cut(s)	1105, 1140
CviAII	CATG	7 cut(s)	36, 380, 449, 530, 563, 593, 689
CviQI	GTAC	5 cut(s)	218, 540, 647, 1157, 1178
DdeI	CTNAG	7 cut(s)	97, 200, 555, 708, 743, 898, 1092
DpnI	GATC	6 cut(s)	229, 234, 760, 776, 927, 962
DpnII	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
EaeI	YGGCCR	2 cut(s)	221, 941
Eam1104I	CTCTTC	2 cut(s)	96, 1000
EarI	CTCTTC	2 cut(s)	96, 1000
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	279, 650
Eco24I	GRGCYC	2 cut(s)	178, 1090
Eco31I	GGTCTC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	599, 950
Eco81I	CCTNAGG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	223, 246
EcoT14I	CCWWGG	2 cut(s)	279, 650
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	178, 1090
ErhI	CCWWGG	2 cut(s)	279, 650
FaeI	CATG	7 cut(s)	39, 383, 452, 533, 566, 596, 692
FatI	CATG	7 cut(s)	35, 379, 448, 529, 562, 592, 688
FokI	GGATG	4 cut(s)	414, 480, 775, 1140
FriOI	GRGCYC	2 cut(s)	178, 1090
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	194
HaeIII	GGCC	4 cut(s)	223, 699, 741, 943
HapII	CCGG	1 cut(s)	696
HgaI	GACGC	3 cut(s)	184, 314, 372
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	7 cut(s)	39, 383, 452, 533, 566, 596, 692
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	696
HphI	GGTGA	5 cut(s)	40, 176, 680, 1088, 1131
Hpy166II	GTNNAC	2 cut(s)	291, 1108
Hpy188I	TCNGA	7 cut(s)	100, 212, 232, 498, 796, 930, 990
Hpy188III	TCNNGA	5 cut(s)	127, 523, 586, 689, 900
Hpy8I	GTNNAC	2 cut(s)	291, 1108
HpyAV	CCTTC	3 cut(s)	838, 925, 1115
HpyCH4III	ACNGT	2 cut(s)	835, 871
HpyCH4IV	ACGT	2 cut(s)	82, 849
HpyCH4V	TGCA	6 cut(s)	261, 448, 452, 536, 562, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 449, 890
HpyF3I	CTNAG	7 cut(s)	97, 200, 555, 708, 743, 898, 1092
HpySE526I	ACGT	2 cut(s)	82, 849
Hsp92II	CATG	7 cut(s)	39, 383, 452, 533, 566, 596, 692
HspAI	GCGC	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	1160
Kzo9I	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
LguI	GCTCTTC	1 cut(s)	1000
LmnI	GCTCC	6 cut(s)	181, 352, 574, 588, 1048, 1093
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	2 cut(s)	82, 849
MaeIII	GTNAC	5 cut(s)	28, 38, 83, 436, 919
MalI	GATC	6 cut(s)	229, 234, 760, 776, 927, 962
MboI	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
MboII	GAAGA	6 cut(s)	113, 121, 769, 1017, 1028, 1046
MflI	RGATCY	3 cut(s)	232, 774, 925
MhlI	GDGCHC	2 cut(s)	178, 1090
MluCI	AATT	7 cut(s)	10, 256, 342, 506, 635, 658, 839
MlyI	GAGTC	6 cut(s)	26, 493, 776, 897, 945, 959
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	7 cut(s)	97, 407, 527, 550, 650, 802, 1067
Mph1103I	ATGCAT	1 cut(s)	450
MroXI	GAANNNNTTC	1 cut(s)	727
MseI	TTAA	3 cut(s)	629, 657, 974
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	2 cut(s)	684, 956
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	2 cut(s)	225, 248
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	225, 248
MvnI	CGCG	2 cut(s)	193, 195
MwoI	GCNNNNNNNGC	3 cut(s)	201, 449, 890
NdeII	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
NlaIII	CATG	7 cut(s)	39, 383, 452, 533, 566, 596, 692
NlaIV	GGNNCC	3 cut(s)	395, 1089, 1158
NmeAIII	GCCGAG	1 cut(s)	969
NmuCI	GTSAC	2 cut(s)	28, 38
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	3 cut(s)	39, 452, 533
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	688
PciI	ACATGT	2 cut(s)	35, 529
PciSI	GCTCTTC	1 cut(s)	1000
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	727
PfeI	GAWTC	5 cut(s)	6, 155, 589, 678, 799
PleI	GAGTC	6 cut(s)	25, 493, 776, 897, 944, 958
PpsI	GAGTC	6 cut(s)	25, 493, 776, 897, 944, 958
PscI	ACATGT	2 cut(s)	35, 529
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	223, 246
PspEI	GGTNACC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	223, 246
PspN4I	GGNNCC	3 cut(s)	395, 1089, 1158
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	3 cut(s)	232, 774, 925
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	5 cut(s)	219, 541, 648, 1158, 1179
RsaNI	GTAC	5 cut(s)	218, 540, 647, 1157, 1178
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	1000
SaqAI	TTAA	3 cut(s)	629, 657, 974
Sau3AI	GATC	6 cut(s)	227, 232, 758, 774, 925, 960
SchI	GAGTC	6 cut(s)	26, 493, 776, 897, 945, 959
ScrFI	CCNGG	2 cut(s)	225, 248
SduI	GDGCHC	2 cut(s)	178, 1090
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	1111
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	7 cut(s)	10, 256, 342, 506, 635, 658, 839
SsiI	CCGC	1 cut(s)	682
SspMI	CTAG	1 cut(s)	756
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	223, 246
StyI	CCWWGG	2 cut(s)	279, 650
TaaI	ACNGT	2 cut(s)	835, 871
TaiI	ACGT	2 cut(s)	85, 852
TaqI	TCGA	2 cut(s)	158, 780
TasI	AATT	7 cut(s)	10, 256, 342, 506, 635, 658, 839
TfiI	GAWTC	5 cut(s)	6, 155, 589, 678, 799
Tru1I	TTAA	3 cut(s)	629, 657, 974
Tru9I	TTAA	3 cut(s)	629, 657, 974
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	2 cut(s)	28, 38
Tsp45I	GTSAC	2 cut(s)	28, 38
TspDTI	ATGAA	3 cut(s)	621, 626, 1090
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	1 cut(s)	862
XapI	RAATTY	2 cut(s)	506, 635
XceI	RCATGY	3 cut(s)	39, 452, 533
XmnI	GAANNNNTTC	1 cut(s)	727
XspI	CTAG	1 cut(s)	756
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.