Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

5556109 .. 5562962

Gene Structure 6854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTCACGACGGATGAGGAGGAGAAGACCGGAGTTATTTTTTTGACGAAGCCATTGTCATTAGATGGGGATTCGGAGGTTGATTATAGAGCTCCTAATCTAATTAAGCGCGTCCTAAGTCTGTTTAAAAATGTACGGCCAGGATCAGATCTCTCTCGTTTCCAGCTGTCACCTCTTTTTAACTTACCGAAGTCACACCTCCAGTGTTTCGGTGAATCGGTGTATTGCGTTGGTAATGATCTGTTAGGGAGGTGCAACAAAGGGGAAAGTCCCCAAGAGAGGTTCACAGCCGTCGTATCATGGAGCATTTCTATTTTGCGTCCTATGATCTTCGGAATTGCTCCTTACAACCCCATTCTTGGAGAAACTCATCATGTTTCAAGGGGGAATCTCAATGTTCTACTTGAGCAGGTTTCACATCACCCACCAGTTACTGCCCTTCATGGAACTGATGAAAAAGAAAACCTTGAAATGATATGGTGTCAACATCCTACTCCCCAATTCTATGGTACTTCAGTGGAAACCGAGGTGCATGGAAAAAGGCAACTGAAGCTCCTGAATCACCGAGAAACATATGAAATGAACTCTCCGAAACTCTTGATCAAATTCTTGCCATTACCTTGGGTTGATTGGGTTGGTGAAAACAGAATCCAGTGTCATGAGACTGGCCTTGAAGCTGAGTTATATTATGGAAGCAGCTCCTTTTTTGGGCTTAGGGGAAATCCCAGAACAGTTAAGGGAAAGATCTTTGACTCAACATCGTTCGAGCTTCTTTATGAGATAGATGGTCAGTGGGATAGAACTGTAAAAATGAAGGACGTCAATAGCGGGAAAGAAACAGTTATATACAATGCGAAAGAAGCCATTTCAGGACTGAAAGCTCCTATGGTAACGGATCAGAAGGGAGTGTGGCCAAGTGAATCAGCTTTAATTTGGGGCATTCTGAGCCAAGCTATTCTTGGGAAAGACTGGAGCAACGCAAGAGAAGCAAAGAAAGCTGTTGAGGAAAAACAGAGGGAGCTCTTGAGAGAAAGAGAATCAAGAGGGGAAACTTGGGTTCCTAACCATTTTACTGTGACACATAGCAAAGAAGGTGGGTGGGATTGCTCACCTATTCAAAAGTGGGTCCCTTCAGCTCCTATATCTGTACCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

386

Amino Acids

43.58

Weight (kDa)

6.33

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1156
AatII	GACGTC	1 cut(s)	822
Acc36I	ACCTGC	1 cut(s)	400
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	828
AclWI	GGATC	2 cut(s)	151, 903
AcoI	YGGCCR	2 cut(s)	137, 911
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	3 cut(s)	498, 569, 1116
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	3 cut(s)	135, 511, 1149
AfiI	CCNNNNNNNGG	3 cut(s)	279, 359, 708
AgsI	TTSAA	4 cut(s)	381, 470, 674, 1118
AjnI	CCWGG	1 cut(s)	139
Alw21I	GWGCWC	2 cut(s)	94, 1023
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	151, 903
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	137, 667, 911
ApeKI	GCWGC	1 cut(s)	696
ApoI	RAATTY	1 cut(s)	605
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	1126
AsuHPI	GGTGA	6 cut(s)	162, 224, 413, 554, 650, 1101
AvaII	GGWCC	1 cut(s)	1126
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BalI	TGGCCA	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	94, 1023
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	94, 1023
BbvI	GCAGC	1 cut(s)	708
BccI	CCATC	2 cut(s)	59, 779
BceAI	ACGGC	2 cut(s)	152, 275
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	400
BglII	AGATCT	2 cut(s)	148, 744
BisI	GCNGC	1 cut(s)	697
BlsI	GCNGC	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	1126
BmgT120I	GGNCC	1 cut(s)	1126
BmiI	GGNNCC	3 cut(s)	1059, 1127, 1128
BmrFI	CCNGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	185, 991
Bpu10I	CCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	2 cut(s)	425, 1045
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	525, 620
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 359, 708
Bse1I	ACTGG	5 cut(s)	202, 428, 652, 670, 974
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	525, 620
BseGI	GGATG	2 cut(s)	19, 487
BseLI	CCNNNNNNNGG	3 cut(s)	279, 359, 708
BseMII	CTCAG	2 cut(s)	669, 935
BseNI	ACTGG	5 cut(s)	202, 428, 652, 670, 974
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	139, 669, 913
BsiHKAI	GWGCWC	2 cut(s)	94, 1023
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	255, 1112
BslI	CCNNNNNNNGG	3 cut(s)	279, 359, 708
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	255, 1112
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	3 cut(s)	139, 669, 913
Bsp1286I	GDGCHC	2 cut(s)	94, 1023
Bsp143I	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
BspACI	CCGC	1 cut(s)	828
BspANI	GGCC	3 cut(s)	139, 669, 913
BspCNI	CTCAG	2 cut(s)	670, 936
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	3 cut(s)	1059, 1127, 1128
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	151, 903
BsrI	ACTGG	5 cut(s)	202, 428, 652, 670, 974
BssECI	CCNNGG	2 cut(s)	525, 620
BssMI	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
BssNI	GRCGYC	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	733, 805, 841, 1075
BstACI	GRCGYC	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	116, 678, 713, 944
BstF5I	GGATG	2 cut(s)	19, 487
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	7 cut(s)	146, 151, 241, 330, 603, 747, 898
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	550, 860, 945, 986, 995
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	708
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	148, 744
BstXI	CCANNNNNNTGG	2 cut(s)	506, 621
BstYI	RGATCY	2 cut(s)	148, 744
BsuRI	GGCC	3 cut(s)	139, 669, 913
BtsCI	GGATG	2 cut(s)	19, 487
BtsIMutI	CAGTG	4 cut(s)	209, 522, 659, 797
BveI	ACCTGC	1 cut(s)	400
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	1126
CseI	GACGC	2 cut(s)	100, 308
Csp6I	GTAC	3 cut(s)	134, 510, 1148
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
CviAII	CATG	5 cut(s)	300, 374, 443, 533, 659
CviQI	GTAC	3 cut(s)	134, 510, 1148
DdeI	CTNAG	4 cut(s)	116, 678, 713, 944
DpnI	GATC	7 cut(s)	145, 150, 240, 329, 602, 746, 897
DpnII	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	137, 911
Ecl136II	GAGCTC	2 cut(s)	92, 1021
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	2 cut(s)	94, 1023
Eco47I	GGWCC	1 cut(s)	1126
Eco53kI	GAGCTC	2 cut(s)	92, 1021
Eco57I	CTGAAG	3 cut(s)	498, 569, 1116
EcoICRI	GAGCTC	2 cut(s)	92, 1021
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	620
EcoT38I	GRGCYC	2 cut(s)	94, 1023
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	5 cut(s)	303, 377, 446, 536, 662
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 942, 974
FaqI	GGGAC	2 cut(s)	255, 1112
FatI	CATG	5 cut(s)	299, 373, 442, 532, 658
FauI	CCCGC	1 cut(s)	821
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	697
FokI	GGATG	2 cut(s)	26, 474
FriOI	GRGCYC	2 cut(s)	94, 1023
Fsp4HI	GCNGC	1 cut(s)	697
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	697
GsuI	CTGGAG	2 cut(s)	185, 991
HaeIII	GGCC	3 cut(s)	139, 669, 913
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	100, 308
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	5 cut(s)	303, 377, 446, 536, 662
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	8 cut(s)	71, 215, 388, 559, 648, 752, 920, 1037
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	6 cut(s)	162, 224, 413, 554, 650, 1101
Hpy166II	GTNNAC	2 cut(s)	285, 485
Hpy188I	TCNGA	6 cut(s)	76, 148, 335, 591, 900, 945
Hpy188III	TCNNGA	7 cut(s)	7, 556, 598, 659, 870, 1024, 1041
Hpy8I	GTNNAC	2 cut(s)	285, 485
Hpy99I	CGWCG	2 cut(s)	13, 296
HpyAV	CCTTC	5 cut(s)	449, 808, 895, 1085, 1140
HpyCH4III	ACNGT	4 cut(s)	733, 805, 841, 1075
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	2 cut(s)	255, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	550, 860, 945, 986, 995
HpyF3I	CTNAG	4 cut(s)	116, 678, 713, 944
HpySE526I	ACGT	1 cut(s)	819
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	5 cut(s)	303, 377, 446, 536, 662
HspAI	GCGC	1 cut(s)	109
KflI	GGGWCCC	1 cut(s)	1126
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
LmnI	GCTCC	9 cut(s)	97, 303, 346, 558, 704, 886, 972, 1018, 1141
Lsp1109I	GCAGC	1 cut(s)	708
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	6 cut(s)	4, 168, 192, 430, 889, 1075
MalI	GATC	7 cut(s)	145, 150, 240, 329, 602, 746, 897
MboI	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
MboII	GAAGA	2 cut(s)	37, 322
MflI	RGATCY	2 cut(s)	148, 744
MhlI	GDGCHC	2 cut(s)	94, 1023
MlsI	TGGCCA	1 cut(s)	913
MluCI	AATT	5 cut(s)	102, 336, 500, 605, 930
MluNI	TGGCCA	1 cut(s)	913
MlyI	GAGTC	1 cut(s)	746
Mox20I	TGGCCA	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	913
MseI	TTAA	5 cut(s)	105, 126, 180, 735, 929
Msp20I	TGGCCA	1 cut(s)	913
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	550, 860, 945, 986, 995
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
NlaIII	CATG	5 cut(s)	303, 377, 446, 536, 662
NlaIV	GGNNCC	3 cut(s)	1059, 1127, 1128
NmuCI	GTSAC	4 cut(s)	4, 168, 192, 1075
PagI	TCATGA	1 cut(s)	658
PctI	GAATGC	1 cut(s)	939
PfeI	GAWTC	7 cut(s)	71, 215, 388, 559, 648, 920, 1037
PkrI	GCNGC	1 cut(s)	698
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	1126
PsiI	TTATAA	1 cut(s)	1156
Psp124BI	GAGCTC	2 cut(s)	94, 1023
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	1059, 1127, 1128
PspPI	GGNCC	1 cut(s)	1126
PspPPI	RGGWCCY	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	148, 744
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	3 cut(s)	135, 511, 1149
RsaNI	GTAC	3 cut(s)	134, 510, 1148
SacI	GAGCTC	2 cut(s)	94, 1023
SaqAI	TTAA	5 cut(s)	105, 126, 180, 735, 929
SatI	GCNGC	1 cut(s)	697
Sau3AI	GATC	7 cut(s)	143, 148, 238, 327, 600, 744, 895
Sau96I	GGNCC	1 cut(s)	1126
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	94, 1023
SinI	GGWCC	1 cut(s)	1126
SmlI	CTYRAG	2 cut(s)	404, 1024
SmoI	CTYRAG	2 cut(s)	404, 1024
Sse9I	AATT	5 cut(s)	102, 336, 500, 605, 930
SsiI	CCGC	1 cut(s)	828
SstI	GAGCTC	2 cut(s)	94, 1023
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	4 cut(s)	733, 805, 841, 1075
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	1 cut(s)	765
TasI	AATT	5 cut(s)	102, 336, 500, 605, 930
TfiI	GAWTC	7 cut(s)	71, 215, 388, 559, 648, 920, 1037
Tru1I	TTAA	5 cut(s)	105, 126, 180, 735, 929
Tru9I	TTAA	5 cut(s)	105, 126, 180, 735, 929
TscAI	CASTG	4 cut(s)	209, 522, 659, 797
TseFI	GTSAC	4 cut(s)	4, 168, 192, 1075
TseI	GCWGC	1 cut(s)	696
Tsp45I	GTSAC	4 cut(s)	4, 168, 192, 1075
TspDTI	ATGAA	5 cut(s)	431, 468, 591, 596, 827
TspGWI	ACGGA	2 cut(s)	26, 908
TspRI	CASTG	4 cut(s)	209, 522, 659, 797
VpaK11BI	GGWCC	1 cut(s)	1126
XapI	RAATTY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	956
ZraI	GACGTC	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.