Rorug04G0019300

Belongs to the OSBP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004160
Physical Location & Seq
Reverse (-)
2852775 .. 2854267
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0019300.1

Sequence Viewer

Length: 1320 bp
ATGTCATCTTCAGCAGAAACGGTAGCGAACATCGAAGGGCTCCTTAAGCAGATCCTCATATCGGTTCCGGTTCTATCTCTGATCCGCTTCAAGTGCGTCTCCAAGCACTGGCTCTCTCTCATTTCCGACCCCGACTTCTGTCGCCGCCACACTCTCCGAAACCCTAACCCCAAAATCTCAGCTTTCTTCTCTTCCCAAACCAATCAAGACACCACCGTCAACTCCATCACTCTCGGCAGCCCATCCGGTAATCCCTTCAAAACTCTCGCCAATTCCGCTTCCGGCTTGAGGATTCTCCAGTCCTGCAATGGCCTCTTCCTCTGCTATCTTGAAGAAGAAAGAAACTATCCTCCTGTGTATGTCGTCAATCCCACCACCAACAAATTCCGGGCTCTCTCTGCTCCAAGCCTTGCGAAGAAGGAGGAAATGTATATGTTTGTGAGGTATGGATTGGCTTTCGACCCTTCGAAATCGCCTCATTACACTGTGGTGTGTGTCAGTCACGACATTCTCCGCGGCAAGCCCCACAGCATAGAGATATATTCGTCGGAGACCGGAACTTGGGTGAAGCGTTTCAAGGCTCCTTTCTTCCCCAGCCCTTCGGACGAGGGCAGGCACATTGATACGCGCAATATGCCTATGCATTTTGATGAGAGGAGCAGGGAAGGGGCAGTGTATTGCAACGGCGCAATTCATTGGATAAGAAACGGATGGGAAGCGAGCCTGCCATTCTGCTCACGCAGAAATGGTGTGATTGAAACAGTTGGATTCGAAAGAAATGAATTGGATGTGTTGCACTACTACGACATAGGTGAAGAAAGTATGCGGCTCGCTGCTGCTACTCCTCCAGTTCCTTTGGTTGTGAAAAACATTCCCTTGAAGAAAAAACACAAATTTCCTACTGAGTTTCCCCGTTTGATTCATAGATACTTTGGCGAGTCAGGTGGTGGCTGTTTGTATTTGATTGAGGTTTTTGAGCATTGTAAGACTCAATTTGAGGTGATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTTAAGTACCATGTTGATCTTAGTCCCGTAGTCGCACCTCTTCCTGGACAGGACCCTAATGCTTTTGTTGTCTTGTTCCTTTCACGAGATGTGGAAACAGGTGGTGAGGATTCTTCAACTGATCTTTGGTTGCATATGCCTGGTAAGGTCGTGTCTTATAATCTCAGGAATAAGAGCTTCAAGACATCTGTTGAGTTATCCAATAGGGAACTTTTTCTAGCTTTAGATGATGATGAATATGAGGGTGATAACTATCCTTACATGGAGACTTTAGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP

Protein Analysis

439

Amino Acids

49.85

Weight (kDa)

6.29

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 99 - 190 2.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1194
AasI GACNNNNNNGTC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 2 cut(s) 516, 628
AciI CCGC 6 cut(s) 85, 145, 276, 514, 516, 826
AclWI GGATC 2 cut(s) 46, 76
AcsI RAATTY 2 cut(s) 383, 893
AfaI GTAC 1 cut(s) 1043
AfiI CCNNNNNNNGG 5 cut(s) 61, 108, 288, 561, 1079
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 8 cut(s) 91, 259, 332, 577, 758, 880, 1152, 1216
AjnI CCWGG 2 cut(s) 1078, 1174
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 4 cut(s) 182, 1212, 1256, 1310
AluI AGCT 4 cut(s) 182, 1212, 1256, 1310
Alw26I GTCTC 3 cut(s) 103, 545, 1295
AlwI GGATC 2 cut(s) 46, 76
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 237, 833, 836
ApoI RAATTY 2 cut(s) 383, 893
Asp700I GAANNNNTTC 2 cut(s) 572, 1248
AspLEI GCGC 2 cut(s) 630, 689
AspS9I GGNCC 1 cut(s) 1087
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 5 cut(s) 577, 824, 1012, 1151, 1292
AsuII TTCGAA 2 cut(s) 467, 771
AvaII GGWCC 1 cut(s) 1087
BanII GRGCYC 2 cut(s) 42, 394
BauI CACGAG 1 cut(s) 1119
BbvI GCAGC 3 cut(s) 249, 820, 823
BccI CCATC 5 cut(s) 233, 250, 705, 997, 1003
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 2 cut(s) 1080, 1176
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 103, 545, 1295
BfaI CTAG 1 cut(s) 1253
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 6 cut(s) 145, 238, 517, 827, 834, 837
BlsI GCNGC 6 cut(s) 146, 239, 518, 828, 835, 838
Bme1390I CCNGG 3 cut(s) 389, 1080, 1176
Bme18I GGWCC 1 cut(s) 1087
BmgT120I GGNCC 1 cut(s) 1087
BmiI GGNNCC 4 cut(s) 41, 66, 582, 1089
BmrFI CCNGG 3 cut(s) 389, 1080, 1176
BoxI GACNNNNGTC 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 281, 831
Bpu14I TTCGAA 2 cut(s) 467, 771
BpuEI CTTGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 1287
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 3 cut(s) 67, 245, 554
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 108, 288, 561, 1079
Bse1I ACTGG 3 cut(s) 113, 298, 848
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 1287
BseBI CCWGG 2 cut(s) 1080, 1176
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 3 cut(s) 242, 716, 793
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 5 cut(s) 61, 108, 288, 561, 1079
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 192, 894, 1213
BseNI ACTGG 3 cut(s) 113, 298, 848
BseRI GAGGAG 2 cut(s) 670, 834
BseXI GCAGC 3 cut(s) 249, 820, 823
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 2 cut(s) 516, 628
BshFI GGCC 1 cut(s) 312
BsiSI CCGG 5 cut(s) 68, 246, 282, 388, 555
BslFI GGGAC 2 cut(s) 1031, 1044
BslI CCNNNNNNNGG 5 cut(s) 61, 108, 288, 561, 1079
BsmAI GTCTC 3 cut(s) 103, 545, 1295
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 1031, 1044
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 545
Bsp119I TTCGAA 2 cut(s) 467, 771
Bsp1286I GDGCHC 2 cut(s) 42, 394
Bsp143I GATC 4 cut(s) 51, 81, 1051, 1156
BspACI CCGC 6 cut(s) 85, 145, 276, 514, 516, 826
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 3 cut(s) 191, 895, 1212
BspFNI CGCG 2 cut(s) 516, 628
BspLI GGNNCC 4 cut(s) 41, 66, 582, 1089
BspPI GGATC 2 cut(s) 46, 76
BspT104I TTCGAA 2 cut(s) 467, 771
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 113, 298, 848
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 4 cut(s) 51, 81, 1051, 1156
BssSI CACGAG 1 cut(s) 1119
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 2 cut(s) 1080, 1176
Bst4CI ACNGT 4 cut(s) 22, 217, 487, 763
Bst6I CTCTTC 3 cut(s) 196, 320, 1080
BstAFI CTTAAG 1 cut(s) 44
BstBI TTCGAA 2 cut(s) 467, 771
BstC8I GCNNGC 5 cut(s) 521, 614, 721, 725, 831
BstDEI CTNAG 4 cut(s) 178, 903, 1055, 1199
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 3 cut(s) 242, 716, 793
BstFNI CGCG 2 cut(s) 516, 628
BstHHI GCGC 2 cut(s) 630, 689
BstKTI GATC 4 cut(s) 54, 84, 1054, 1159
BstMAI GTCTC 3 cut(s) 103, 545, 1295
BstMBI GATC 4 cut(s) 51, 81, 1051, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 398, 634
BstNI CCWGG 2 cut(s) 1080, 1176
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 387, 1078, 1174
BstUI CGCG 2 cut(s) 516, 628
BstV1I GCAGC 3 cut(s) 249, 820, 823
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 3 cut(s) 242, 716, 793
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 3 cut(s) 106, 483, 678
Cac8I GCNNGC 5 cut(s) 521, 614, 721, 725, 831
CfoI GCGC 2 cut(s) 630, 689
Cfr13I GGNCC 1 cut(s) 1087
Cfr42I CCGCGG 1 cut(s) 517
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 1042
CviAII CATG 2 cut(s) 1046, 1297
CviQI GTAC 1 cut(s) 1042
DdeI CTNAG 4 cut(s) 178, 903, 1055, 1199
DpnI GATC 4 cut(s) 53, 83, 1053, 1158
DpnII GATC 4 cut(s) 51, 81, 1051, 1156
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 3 cut(s) 196, 320, 1080
EarI CTCTTC 3 cut(s) 196, 320, 1080
Eco24I GRGCYC 2 cut(s) 42, 394
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 1087
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRII CCWGG 2 cut(s) 1078, 1174
EcoT22I ATGCAT 1 cut(s) 645
EcoT38I GRGCYC 2 cut(s) 42, 394
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 1049, 1300
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 2 cut(s) 1031, 1044
FatI CATG 2 cut(s) 1045, 1296
FauNDI CATATG 1 cut(s) 1170
Fnu4HI GCNGC 6 cut(s) 145, 238, 517, 827, 834, 837
FokI GGATG 3 cut(s) 229, 723, 800
FriOI GRGCYC 2 cut(s) 42, 394
Fsp4HI GCNGC 6 cut(s) 145, 238, 517, 827, 834, 837
FspBI CTAG 1 cut(s) 1253
GlaI GCGC 2 cut(s) 629, 688
GluI GCNGC 6 cut(s) 145, 238, 517, 827, 834, 837
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 2 cut(s) 281, 831
HaeIII GGCC 1 cut(s) 312
HapII CCGG 5 cut(s) 68, 246, 282, 388, 555
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 630, 689
Hin1II CATG 2 cut(s) 1049, 1300
Hin6I GCGC 2 cut(s) 628, 687
HinP1I GCGC 2 cut(s) 628, 687
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 6 cut(s) 292, 768, 919, 938, 988, 1145
HpaII CCGG 5 cut(s) 68, 246, 282, 388, 555
HphI GGTGA 5 cut(s) 577, 824, 1012, 1151, 1292
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 81, 127, 158, 550, 604
Hpy188III TCNNGA 6 cut(s) 206, 329, 503, 1119, 1201, 1216
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 6 cut(s) 29, 265, 412, 474, 609, 659
HpyCH4III ACNGT 4 cut(s) 22, 217, 487, 763
HpyCH4V TGCA 5 cut(s) 306, 643, 681, 796, 1168
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 398, 634
HpyF3I CTNAG 4 cut(s) 178, 903, 1055, 1199
Hsp92II CATG 2 cut(s) 1049, 1300
HspAI GCGC 2 cut(s) 628, 687
KspI CCGCGG 1 cut(s) 517
Kzo9I GATC 4 cut(s) 51, 81, 1051, 1156
LmnI GCTCC 4 cut(s) 45, 406, 586, 657
Lsp1109I GCAGC 3 cut(s) 249, 820, 823
MaeI CTAG 1 cut(s) 1253
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 53, 83, 1053, 1158
MboI GATC 4 cut(s) 51, 81, 1051, 1156
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 42, 394
MluCI AATT 6 cut(s) 271, 383, 690, 782, 893, 992
MlyI GAGTC 2 cut(s) 947, 982
MmeI TCCRAC 3 cut(s) 150, 528, 745
Mph1103I ATGCAT 1 cut(s) 645
MroXI GAANNNNTTC 2 cut(s) 572, 1248
MseI TTAA 2 cut(s) 45, 1038
MslI CAYNNNNRTG 2 cut(s) 488, 648
MspA1I CMGCKG 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 5 cut(s) 68, 246, 282, 388, 555
MspR9I CCNGG 3 cut(s) 389, 1080, 1176
MvaI CCWGG 2 cut(s) 1080, 1176
MvnI CGCG 2 cut(s) 516, 628
MwoI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 398, 634
NciI CCSGG 1 cut(s) 389
NdeI CATATG 1 cut(s) 1170
NdeII GATC 4 cut(s) 51, 81, 1051, 1156
NlaIII CATG 2 cut(s) 1049, 1300
NlaIV GGNNCC 4 cut(s) 41, 66, 582, 1089
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 645
NspV TTCGAA 2 cut(s) 467, 771
OliI CACNNNNGTG 1 cut(s) 488
PdmI GAANNNNTTC 2 cut(s) 572, 1248
PfeI GAWTC 4 cut(s) 292, 768, 919, 1145
PflMI CCANNNNNTGG 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 1078
PkrI GCNGC 6 cut(s) 146, 239, 518, 828, 835, 838
PleI GAGTC 2 cut(s) 946, 982
PpsI GAGTC 2 cut(s) 946, 982
PpuMI RGGWCCY 1 cut(s) 1087
PshAI GACNNNNGTC 1 cut(s) 138
PsiI TTATAA 1 cut(s) 1194
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 2 cut(s) 1078, 1174
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 1078, 1174
PspN4I GGNNCC 4 cut(s) 41, 66, 582, 1089
PspPI GGNCC 1 cut(s) 1087
PspPPI RGGWCCY 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 1043
RsaNI GTAC 1 cut(s) 1042
RseI CAYNNNNRTG 2 cut(s) 488, 648
SacII CCGCGG 1 cut(s) 517
SaqAI TTAA 2 cut(s) 45, 1038
SatI GCNGC 6 cut(s) 145, 238, 517, 827, 834, 837
Sau3AI GATC 4 cut(s) 51, 81, 1051, 1156
Sau96I GGNCC 1 cut(s) 1087
SchI GAGTC 2 cut(s) 947, 982
ScrFI CCNGG 3 cut(s) 389, 1080, 1176
SduI GDGCHC 2 cut(s) 42, 394
Sfr303I CCGCGG 1 cut(s) 517
SfuI TTCGAA 2 cut(s) 467, 771
SgrBI CCGCGG 1 cut(s) 517
SinI GGWCC 1 cut(s) 1087
SmiMI CAYNNNNRTG 2 cut(s) 488, 648
SmlI CTYRAG 2 cut(s) 44, 286
SmoI CTYRAG 2 cut(s) 44, 286
Sse9I AATT 6 cut(s) 271, 383, 690, 782, 893, 992
SsiI CCGC 6 cut(s) 85, 145, 276, 514, 516, 826
SspMI CTAG 1 cut(s) 1253
StyD4I CCNGG 3 cut(s) 387, 1078, 1174
TaaI ACNGT 4 cut(s) 22, 217, 487, 763
TaqI TCGA 4 cut(s) 33, 459, 467, 771
TasI AATT 6 cut(s) 271, 383, 690, 782, 893, 992
TauI GCSGC 3 cut(s) 147, 519, 829
TfiI GAWTC 4 cut(s) 292, 768, 919, 1145
Tru1I TTAA 2 cut(s) 45, 1038
Tru9I TTAA 2 cut(s) 45, 1038
TscAI CASTG 3 cut(s) 113, 490, 678
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 3 cut(s) 237, 833, 836
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 4 cut(s) 683, 795, 911, 1284
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 3 cut(s) 113, 490, 678
Van91I CCANNNNNTGG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 1087
XapI RAATTY 2 cut(s) 383, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 572, 1248
XspI CTAG 1 cut(s) 1253
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.