Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

25392663 .. 25397762

Gene Structure 5100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1243400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTCAAGGAGGAGGACAATTCCAGAGTTATTTTCTTGACAAAGCCATTGTCATTAGAAGGGGATTCCGATGTTGATTACAGAGCTCCTAATCTACTTAAACGTGTGCTGAGTCTGTTTAAAAACGCACGGCCAGGATCTGATCTCACACGCTTCCAGCTGTCACCGCTGTTTAACATTCCCAAGTCACACCTCCAGTGTTTCGGTGAATCAGTGTACTGCGTTGGTATTGATTTGTTAGGAAGGTGCAACAGAGCCGAAACCCCTCATGACAGGTTCTCAGCTGTTGTATCTTGGAGCATTTCTACTTTGCGTCCTATGATCTTCGGAATTGCTCCTTACAACCCCATTCTTGGAGAAACCCATCATGTTACAAGGGGGAACCTCAATGTTCTACTTGAGCAGGTTTCACATCATCCACCAGTTACCGCTCTTCATGCAACCGATGAAAAAGAAAACCTTGAAATGATCTGGTGTCAACATCCTACTCCCAAATTCTATGGTACTTCAGTGGAAACGGAGGTGCATGGAAAACGTCAGTTGAAGCTCCTGAATCACAGAGAAACTTATGAAATGAACTCACCAAAACTCTTAATAAAGTTCCTCCCATTGCCTTGGGTGGATTGGGTTGGTGAAAATAGAATCCGGTGTCATGAGACGGGCCTTGAAGCGGAGTTATATTATGGAAGCAATTCATGGATTAGGGGAAATCCTAGAACAATTAAGGGAAAGATCTTTGACTCAACAACATTCGAGCTTCTTTATGAGATACATGGTCAGTGGGATAGAACTGTCAAAATGAAGGACGTTAGCAGCGGGAAAGAAACCGTTATATACAATGCAAAAGAAGCCATTTCGGGACTGAAAGCTCCGATTGTTACCGATTTGAAGGGGGTTTGGCCGAGTGAATCAGCTGTGATCTGGGGAGTGCTGAGCCAAGCAATTCTTGGGAAGGACTGGAACAAAGCAAGAGAGGCAAAGAAAGTAGTGGAAGAAAAACAGAGGGAGCTGCTGAGAGAGAGGGAAGCAAAAGGTGAAACTTGGGTTCCCAACCATTTTAGTGTCGCTCATAGCAAAGAAGGTGGTGGGTGGGACTGCGCACCCATCCAGCAATGGGTGCCACCAGCTCCTATTTCTCTACCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

383

Amino Acids

43.39

Weight (kDa)

7.69

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	44 - 280	1.5e-45	Oxysterol-binding protein
Oxysterol_BP	PF01237	316 - 358	5.7e-06	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1099
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	1117
AccBSI	CCGCTC	1 cut(s)	431
AciI	CCGC	4 cut(s)	167, 429, 671, 816
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	131, 899
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	218, 505
AfiI	CCNNNNNNNGG	3 cut(s)	353, 670, 1114
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	464, 544, 668, 889
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	9 cut(s)	86, 160, 284, 547, 757, 869, 914, 1009, 1127
AluI	AGCT	9 cut(s)	86, 160, 284, 547, 757, 869, 914, 1009, 1127
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	3 cut(s)	131, 661, 899
ApeKI	GCWGC	2 cut(s)	813, 1009
ApoI	RAATTY	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	1100
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	5 cut(s)	156, 218, 573, 644, 1046
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	1 cut(s)	1117
BanII	GRGCYC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	825, 996
BccI	CCATC	2 cut(s)	372, 1112
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	1 cut(s)	714
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	2 cut(s)	814, 1010
BlpI	GCTNAGC	1 cut(s)	932
BlsI	GCNGC	2 cut(s)	815, 1011
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	3 cut(s)	383, 1047, 1119
BmrFI	CCNGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	614
BsaWI	WCCGGW	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 670, 1114
Bse1I	ACTGG	3 cut(s)	196, 422, 962
Bse3DI	GCAATG	2 cut(s)	608, 1118
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	3 cut(s)	415, 481, 1104
BseLI	CCNNNNNNNGG	3 cut(s)	353, 670, 1114
BseMI	GCAATG	2 cut(s)	608, 1118
BseMII	CTCAG	4 cut(s)	101, 294, 923, 1004
BseNI	ACTGG	3 cut(s)	196, 422, 962
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	825, 996
BshFI	GGCC	3 cut(s)	133, 663, 901
BshNI	GGYRCC	1 cut(s)	1117
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	646
BslFI	GGGAC	2 cut(s)	873, 1106
BslI	CCNNNNNNNGG	3 cut(s)	353, 670, 1114
BsmAI	GTCTC	1 cut(s)	650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	873, 1106
BsnI	GGCC	3 cut(s)	133, 663, 901
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
Bsp1720I	GCTNAGC	1 cut(s)	932
BspACI	CCGC	4 cut(s)	167, 429, 671, 816
BspANI	GGCC	3 cut(s)	133, 663, 901
BspCNI	CTCAG	4 cut(s)	102, 293, 924, 1005
BspHI	TCATGA	2 cut(s)	268, 652
BspLI	GGNNCC	3 cut(s)	383, 1047, 1119
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	1117
BsrBI	CCGCTC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	608, 1118
BsrI	ACTGG	3 cut(s)	196, 422, 962
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
BssT1I	CCWWGG	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	793, 829
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstDEI	CTNAG	4 cut(s)	110, 280, 932, 1013
BstF5I	GGATG	3 cut(s)	415, 481, 1104
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	6 cut(s)	140, 145, 324, 471, 735, 921
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 437, 848, 974, 1117
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	825, 996
BstX2I	RGATCY	2 cut(s)	137, 732
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	2 cut(s)	137, 732
BsuRI	GGCC	3 cut(s)	133, 663, 901
BtsCI	GGATG	3 cut(s)	415, 481, 1104
BtsIMutI	CAGTG	4 cut(s)	203, 219, 516, 785
BveI	ACCTGC	1 cut(s)	394
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	2 cut(s)	268, 652
CfoI	GCGC	1 cut(s)	1100
Cfr13I	GGNCC	1 cut(s)	661
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	217, 504
CspCI	CAANNNNNGTGG	2 cut(s)	1063, 1098
CviAII	CATG	7 cut(s)	269, 368, 437, 527, 653, 696, 773
CviQI	GTAC	2 cut(s)	217, 504
DdeI	CTNAG	4 cut(s)	110, 280, 932, 1013
DpnI	GATC	6 cut(s)	139, 144, 323, 470, 734, 920
DpnII	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	2 cut(s)	131, 899
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	614
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	7 cut(s)	272, 371, 440, 530, 656, 699, 776
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 930, 962
FaqI	GGGAC	2 cut(s)	873, 1106
FatI	CATG	7 cut(s)	268, 367, 436, 526, 652, 695, 772
FauI	CCCGC	1 cut(s)	809
Fnu4HI	GCNGC	2 cut(s)	814, 1010
FokI	GGATG	3 cut(s)	402, 468, 1091
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	814, 1010
FspBI	CTAG	1 cut(s)	714
FspI	TGCGCA	1 cut(s)	1099
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	2 cut(s)	814, 1010
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	133, 663, 901
HapII	CCGG	1 cut(s)	646
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	7 cut(s)	272, 371, 440, 530, 656, 699, 776
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HinfI	GANTC	7 cut(s)	65, 112, 209, 553, 642, 740, 908
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	5 cut(s)	156, 218, 573, 644, 1046
Hpy166II	GTNNAC	2 cut(s)	217, 479
Hpy188I	TCNGA	4 cut(s)	70, 142, 329, 873
Hpy188III	TCNNGA	6 cut(s)	24, 37, 269, 550, 653, 858
Hpy8I	GTNNAC	2 cut(s)	217, 479
HpyAV	CCTTC	6 cut(s)	53, 237, 796, 883, 946, 1073
HpyCH4III	ACNGT	2 cut(s)	793, 829
HpyCH4IV	ACGT	3 cut(s)	103, 535, 807
HpyCH4V	TGCA	4 cut(s)	249, 440, 526, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 437, 848, 974, 1117
HpyF3I	CTNAG	4 cut(s)	110, 280, 932, 1013
HpySE526I	ACGT	3 cut(s)	103, 535, 807
Hsp92II	CATG	7 cut(s)	272, 371, 440, 530, 656, 699, 776
HspAI	GCGC	1 cut(s)	1098
Kzo9I	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	7 cut(s)	91, 297, 340, 552, 874, 1006, 1132
Lsp1109I	GCAGC	2 cut(s)	825, 996
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	3 cut(s)	103, 535, 807
MaeIII	GTNAC	5 cut(s)	162, 186, 370, 424, 877
MalI	GATC	6 cut(s)	139, 144, 323, 470, 734, 920
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
MboII	GAAGA	3 cut(s)	316, 425, 1004
MflI	RGATCY	2 cut(s)	137, 732
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	6 cut(s)	19, 330, 494, 691, 720, 942
MlyI	GAGTC	2 cut(s)	121, 734
MroXI	GAANNNNTTC	1 cut(s)	691
MseI	TTAA	5 cut(s)	99, 120, 174, 593, 723
MslI	CAYNNNNRTG	1 cut(s)	1059
MspA1I	CMGCKG	5 cut(s)	160, 169, 284, 816, 914
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	5 cut(s)	166, 437, 848, 974, 1117
NdeII	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
NlaIII	CATG	7 cut(s)	272, 371, 440, 530, 656, 699, 776
NlaIV	GGNNCC	3 cut(s)	383, 1047, 1119
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	2 cut(s)	162, 186
NsbI	TGCGCA	1 cut(s)	1099
PagI	TCATGA	2 cut(s)	268, 652
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	5 cut(s)	65, 209, 553, 642, 908
PkrI	GCNGC	2 cut(s)	815, 1011
PleI	GAGTC	2 cut(s)	120, 734
PpsI	GAGTC	2 cut(s)	120, 734
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	383, 1047, 1119
PspPI	GGNCC	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	137, 732
PvuII	CAGCTG	3 cut(s)	160, 284, 914
RsaI	GTAC	2 cut(s)	218, 505
RsaNI	GTAC	2 cut(s)	217, 504
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	99, 120, 174, 593, 723
SatI	GCNGC	2 cut(s)	814, 1010
Sau3AI	GATC	6 cut(s)	137, 142, 321, 468, 732, 918
Sau96I	GGNCC	1 cut(s)	661
SchI	GAGTC	2 cut(s)	121, 734
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	19, 330, 494, 691, 720, 942
SsiI	CCGC	4 cut(s)	167, 429, 671, 816
SspMI	CTAG	1 cut(s)	714
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	793, 829
TaiI	ACGT	3 cut(s)	106, 538, 810
TaqI	TCGA	1 cut(s)	753
TasI	AATT	6 cut(s)	19, 330, 494, 691, 720, 942
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	5 cut(s)	65, 209, 553, 642, 908
Tru1I	TTAA	5 cut(s)	99, 120, 174, 593, 723
Tru9I	TTAA	5 cut(s)	99, 120, 174, 593, 723
TscAI	CASTG	4 cut(s)	203, 219, 516, 785
TseFI	GTSAC	2 cut(s)	162, 186
TseI	GCWGC	2 cut(s)	813, 1009
Tsp45I	GTSAC	2 cut(s)	162, 186
TspDTI	ATGAA	6 cut(s)	425, 462, 585, 590, 684, 815
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	4 cut(s)	203, 219, 516, 785
XapI	RAATTY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.