Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

6764995 .. 6771388

Gene Structure 6394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTAGGGAATTGCAACAATGGGGAAACACCCAAGGACCGGTTCACGGCCGTTGTATCCTGGAGTATTTCTATTTTGCGTCCTGTGATTTTTGGAATGGCTCCATTCAACCCCATTCTTGGAGAAACTCATCATGTGTCAAGGGGAAACCTGAATGTCCTACTTGAGCAGATTTCACATCATCCACCAGTCACTGCACTGCATGCAACTGATGAGAAATCAAACATTGAAATGATATGGTGTCAGCATCCTAATCCCAAATTCTATGGTACTTCAGTGGAAGCTGAGGTGCATGGGAAAAGGGAACTGAAGCTTCTGAATCACGGAGAAACTTATGAAATGAACTCACCAAAACTCGTGATCAAATTCCTCCCAGTACCTTGGGTTAATTGGGTCGGTGAACATAGAATCCGCTGTCAAGAGACTGGCCTTGAAGCTGAGTTATACTATGGAAGCAGTTCCTATTTCGGTCTTAGGGGAAATCCTAGATCAGTCAAGGGAAAGATCTTCTACTCATCATCCTTGGAGCTTCTTTATGAGATAGATGGTCAGTGGGATAGAACTGTGAAATTGAAGGACGTCAGCAGTGGGAAAGAAACAGTTATATACAATGCAAAAGAAGCCATCTCAGGGCTCAAAGCTCCTGTTCTTACAGATCCGAAGGGTGTCTGGCCAAGTGAGTCAGCTGTGGTCTGGGGTTTGTTGAGCCAAGCCATTCTAAACAAGGACTGGGGAAGAGCAAGAGAAGAAAAGAAAGAAGTTGAAGAAAAACAAAGGGAGCTATCTAGACAGAGACAATCAAGAGGTGAAACTTGGGCTCCTCAGCATTTCATTGTGAACTATAGCAAAGAAGTTGGATGGGATTGCTCACCCATTCACAAGAGGGTCCCACCAGCCCCCATATCTGTACCCATCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

307

Amino Acids

34.63

Weight (kDa)

8.24

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	44 - 282	7.2e-44	Oxysterol-binding protein
Oxysterol_BP	PF01237	316 - 358	1.3e-06	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	582
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	2 cut(s)	48, 671
AcsI	RAATTY	2 cut(s)	260, 365
AcuI	CTGAAG	2 cut(s)	258, 329
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	3 cut(s)	271, 378, 909
AfiI	CCNNNNNNNGG	4 cut(s)	39, 46, 119, 630
AgeI	ACCGGT	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	109, 230, 434, 574, 764
AjnI	CCWGG	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	7 cut(s)	284, 313, 437, 529, 641, 686, 781
AluI	AGCT	7 cut(s)	284, 313, 437, 529, 641, 686, 781
Alw26I	GTCTC	2 cut(s)	416, 787
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	48, 427, 671
ApoI	RAATTY	2 cut(s)	260, 365
AsiGI	ACCGGT	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	37, 886
AsuHPI	GGTGA	4 cut(s)	339, 410, 818, 861
AvaII	GGWCC	2 cut(s)	37, 886
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BalI	TGGCCA	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	636, 820
BauI	CACGAG	1 cut(s)	356
BbvCI	CCTCAGC	2 cut(s)	285, 822
BccI	CCATC	4 cut(s)	539, 632, 852, 920
BceAI	ACGGC	2 cut(s)	35, 63
BciT130I	CCWGG	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	67
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	416, 787
BfaI	CTAG	2 cut(s)	486, 786
BfmI	CTRYAG	1 cut(s)	841
BfuI	GTATCC	1 cut(s)	67
BglII	AGATCT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	2 cut(s)	37, 886
BmgT120I	GGNCC	2 cut(s)	37, 886
BmiI	GGNNCC	4 cut(s)	102, 819, 887, 888
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	2 cut(s)	368, 739
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	2 cut(s)	368, 739
BpmI	CTGGAG	1 cut(s)	82
Bpu10I	CCTNAGC	2 cut(s)	285, 822
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	33, 380, 522
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 46, 119, 630
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	4 cut(s)	188, 374, 430, 734
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	33, 380, 522
BseGI	GGATG	4 cut(s)	181, 247, 518, 863
BseLI	CCNNNNNNNGG	4 cut(s)	39, 46, 119, 630
BseMII	CTCAG	4 cut(s)	276, 429, 642, 836
BseNI	ACTGG	4 cut(s)	188, 374, 430, 734
BseRI	GAGGAG	1 cut(s)	810
BseX3I	CGGCCG	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	50, 429, 673
BshTI	ACCGGT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	4 cut(s)	39, 46, 119, 630
BsmAI	GTCTC	2 cut(s)	416, 787
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	3 cut(s)	50, 429, 673
Bsp1286I	GDGCHC	2 cut(s)	636, 820
Bsp143I	GATC	4 cut(s)	360, 488, 504, 655
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	50, 429, 673
BspCNI	CTCAG	4 cut(s)	277, 430, 641, 835
BspLI	GGNNCC	4 cut(s)	102, 819, 887, 888
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	4 cut(s)	188, 374, 430, 734
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	33, 380, 522
BssMI	GATC	4 cut(s)	360, 488, 504, 655
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	3 cut(s)	33, 380, 522
Bst2BI	CACGAG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	565, 601
Bst6I	CTCTTC	1 cut(s)	730
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	5 cut(s)	285, 438, 473, 628, 822
BstF5I	GGATG	4 cut(s)	181, 247, 518, 863
BstKTI	GATC	4 cut(s)	363, 491, 507, 658
BstMAI	GTCTC	2 cut(s)	416, 787
BstMBI	GATC	4 cut(s)	360, 488, 504, 655
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 620
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	504, 655
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	2 cut(s)	504, 655
BstZI	CGGCCG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	50, 429, 673
BtsCI	GGATG	4 cut(s)	181, 247, 518, 863
BtsI	GCAGTG	3 cut(s)	192, 197, 592
BtsIMutI	CAGTG	5 cut(s)	192, 197, 282, 557, 592
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	37, 886
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	270, 377, 908
CspAI	ACCGGT	1 cut(s)	39
CviAII	CATG	3 cut(s)	134, 203, 293
CviQI	GTAC	3 cut(s)	270, 377, 908
DdeI	CTNAG	5 cut(s)	285, 438, 473, 628, 822
DpnI	GATC	4 cut(s)	362, 490, 506, 657
DpnII	GATC	4 cut(s)	360, 488, 504, 655
EaeI	YGGCCR	2 cut(s)	48, 671
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	33, 380, 522
Eco24I	GRGCYC	2 cut(s)	636, 820
Eco47I	GGWCC	2 cut(s)	37, 886
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	258, 329
EcoO109I	RGGNCCY	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	3 cut(s)	33, 380, 522
EcoT38I	GRGCYC	2 cut(s)	636, 820
ErhI	CCWWGG	3 cut(s)	33, 380, 522
FaeI	CATG	3 cut(s)	137, 206, 296
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	3 cut(s)	133, 202, 292
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	4 cut(s)	168, 234, 505, 870
FriOI	GRGCYC	2 cut(s)	636, 820
FspBI	CTAG	2 cut(s)	486, 786
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	50, 429, 673
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	137, 206, 296
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	319, 408, 680
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	4 cut(s)	339, 410, 818, 861
Hpy166II	GTNNAC	3 cut(s)	45, 401, 838
Hpy188I	TCNGA	2 cut(s)	318, 660
Hpy188III	TCNNGA	4 cut(s)	358, 419, 786, 801
Hpy8I	GTNNAC	3 cut(s)	45, 401, 838
HpyAV	CCTTC	2 cut(s)	568, 655
HpyCH4III	ACNGT	2 cut(s)	565, 601
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	15, 197, 202, 206, 292, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 620
HpyF3I	CTNAG	5 cut(s)	285, 438, 473, 628, 822
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	137, 206, 296
KflI	GGGWCCC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	360, 488, 504, 655
LguI	GCTCTTC	1 cut(s)	730
LmnI	GCTCC	5 cut(s)	106, 526, 646, 778, 823
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	486, 786
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	362, 490, 506, 657
MboI	GATC	4 cut(s)	360, 488, 504, 655
MboII	GAAGA	4 cut(s)	499, 747, 758, 776
MflI	RGATCY	2 cut(s)	504, 655
MhlI	GDGCHC	2 cut(s)	636, 820
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	5 cut(s)	10, 260, 365, 388, 569
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	835
MnlI	CCTC	5 cut(s)	280, 380, 797, 831, 876
Mox20I	TGGCCA	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	673
MspA1I	CMGCKG	2 cut(s)	414, 686
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	203, 620
NdeII	GATC	4 cut(s)	360, 488, 504, 655
NlaIII	CATG	3 cut(s)	137, 206, 296
NlaIV	GGNNCC	4 cut(s)	102, 819, 887, 888
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	319, 408
PfoI	TCCNGGA	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	39
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PpuMI	RGGWCCY	1 cut(s)	886
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	102, 819, 887, 888
PspPI	GGNCC	2 cut(s)	37, 886
PspPPI	RGGWCCY	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	504, 655
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	3 cut(s)	271, 378, 909
RsaNI	GTAC	3 cut(s)	270, 377, 908
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	730
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	360, 488, 504, 655
Sau96I	GGNCC	2 cut(s)	37, 886
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	636, 820
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	841
SinI	GGWCC	2 cut(s)	37, 886
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	5 cut(s)	10, 260, 365, 388, 569
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	2 cut(s)	486, 786
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	3 cut(s)	33, 380, 522
TaaI	ACNGT	2 cut(s)	565, 601
TaiI	ACGT	1 cut(s)	582
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	5 cut(s)	10, 260, 365, 388, 569
TfiI	GAWTC	2 cut(s)	319, 408
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	5 cut(s)	199, 204, 282, 557, 592
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	351, 356, 820
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	5 cut(s)	199, 204, 282, 557, 592
VpaK11BI	GGWCC	2 cut(s)	37, 886
XapI	RAATTY	2 cut(s)	260, 365
XbaI	TCTAGA	1 cut(s)	785
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	2 cut(s)	486, 786
ZraI	GACGTC	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.