Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

19469286 .. 19474533

Gene Structure 5248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTGGAGAAGACGAGAGTTGTTTTCTTGACAAAGCCATTGTCATTAGAAAGCGAATCGAATGATGATTACAGAGCTCCTAATATACTTAAGCGCGTCCTAAGCCTATTCACAAATGTACGCCCAGGATCAGATCTCACTCGCTTCCAGCTGTCACCTCTCTTTAACATACCAAAGTCACAGCTCCAGTGTTTCGGCGAATGTGTGTACTGCATTAATAATGATATGTTAGGGAATTGCAACAAAGGGGAAACCCCCAAGGACAGGTTCACAGCTGTTGTATCGTGGAGTATTTCTACTTTGCGTCCTATGATTTTTGGAATTGCTCCATACAACCCTATTCTTGGAGAAACTCATCATGCGTCAAGGGGGGACCTCAATGTTCTACTTGAGCAGATTTCACATCATCCACCAGTTACTGCGATGCATGCAACTGATGAGAAATCAAACATTGAAATGATATGGTGTAACCATCCTACTCCCAAATTCTATGGTACTTCCGTGGAAACTGTGGTGCATGGAAAAAGGGAGCTGAAGCTCCTGAATCATGGAGAAACTTATGAAATGAACGCCCCAAAACTTTTAATCAAATTCCTCCCAGTACCTTGGGTTAATTGGGTTGGTGAAAATAGAATCCGCTGTCATGAGACCGGCCTTGAAGCTGAGTTATACTATGGAAGCAGTTCCCTTTTTGGCCTTAGGGGAAATCCTAGATCAGTCAAGGGAAAGATCTTCGACTCATCATCCTTGGAGATTCTTTATGAGATAGATGGTCAATGGGATAGAACTGTCAAATTGAAGGACGTTAGCAGTGGGAAAGAAACAGTTATATACAATGCAAAAGAAGCCATCTCAGGACTCAAATCTCCTGTTGTTACAGATCCGAAGGGAGTCTGGCCGAGTGAGTCAGCTGTGATCTGGGGTTTGTTAAGCCAATCTATCCTGAACAAGGACTGGGGAAGAGCAAGAGAAGAAAAGAAAGAAGTTGAAGAAAAACAAAGGGAGCTATTTAGAGAAAGAGAAGCCAGAGGTGAAACTTGGGCTCCTAAGCATTTCATTGTGAACTATAGCAAAGAAGGTGGATGGGATTGCTCACCCATTCACAAGTGGGTACCACCAGCCCCCATATCCGTACCCATCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

381

Amino Acids

43.17

Weight (kDa)

7.64

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	40 - 279	1.1e-43	Oxysterol-binding protein
Oxysterol_BP	PF01237	314 - 355	2.9e-06	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	1111
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	637
AclWI	GGATC	2 cut(s)	136, 875
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	2 cut(s)	485, 590
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	6 cut(s)	120, 209, 496, 603, 1113, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	264, 344, 949
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	455, 659, 799, 989
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	9 cut(s)	77, 151, 184, 275, 532, 538, 662, 911, 1006
AluI	AGCT	9 cut(s)	77, 151, 184, 275, 532, 538, 662, 911, 1006
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	2 cut(s)	136, 875
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	652, 694, 896
ApoI	RAATTY	2 cut(s)	485, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	682
Asp718I	GGTACC	1 cut(s)	1111
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	4 cut(s)	147, 635, 1043, 1086
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	698
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BanI	GGYRCC	1 cut(s)	1111
BanII	GRGCYC	2 cut(s)	79, 1045
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	5 cut(s)	480, 764, 857, 1077, 1145
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	1066
BfrI	CTTAAG	1 cut(s)	89
BglII	AGATCT	2 cut(s)	133, 729
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	374, 1044, 1113
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	2 cut(s)	593, 964
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	2 cut(s)	593, 964
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	2 cut(s)	101, 1047
BpuEI	CTTGAG	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	5 cut(s)	124, 258, 501, 605, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	1027, 1057
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 344, 949
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	4 cut(s)	187, 413, 599, 959
Bse21I	CCTNAGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	5 cut(s)	124, 258, 501, 605, 747
BseGI	GGATG	4 cut(s)	406, 472, 743, 1088
BseLI	CCNNNNNNNGG	3 cut(s)	264, 344, 949
BseMII	CTCAG	2 cut(s)	654, 867
BseNI	ACTGG	4 cut(s)	187, 413, 599, 959
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	3 cut(s)	654, 696, 898
BshNI	GGYRCC	1 cut(s)	1111
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	264, 344, 949
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	3 cut(s)	654, 696, 898
Bso31I	GGTCTC	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	79, 1045
Bsp143I	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
BspACI	CCGC	1 cut(s)	637
BspANI	GGCC	3 cut(s)	654, 696, 898
BspCNI	CTCAG	2 cut(s)	655, 866
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	374, 1044, 1113
BspPI	GGATC	2 cut(s)	136, 875
BspQI	GCTCTTC	1 cut(s)	955
BspT107I	GGYRCC	1 cut(s)	1111
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	4 cut(s)	187, 413, 599, 959
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	5 cut(s)	124, 258, 501, 605, 747
BssMI	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
BssT1I	CCWWGG	3 cut(s)	258, 605, 747
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	511, 790, 826
Bst6I	CTCTTC	1 cut(s)	955
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	5 cut(s)	101, 663, 698, 853, 1047
BstDSI	CCRYGG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	947
BstF5I	GGATG	4 cut(s)	406, 472, 743, 1088
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	6 cut(s)	131, 136, 716, 732, 883, 918
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 428, 845
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	1066
BstUI	CGCG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	3 cut(s)	133, 729, 880
BstXI	CCANNNNNNTGG	1 cut(s)	606
BstYI	RGATCY	3 cut(s)	133, 729, 880
Bsu36I	CCTNAGG	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	654, 696, 898
BtgI	CCRYGG	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	4 cut(s)	406, 472, 743, 1088
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	194, 817
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	3 cut(s)	85, 293, 351
Csp6I	GTAC	6 cut(s)	119, 208, 495, 602, 1112, 1133
CspCI	CAANNNNNGTGG	2 cut(s)	1060, 1095
CviAII	CATG	5 cut(s)	359, 428, 518, 548, 644
CviQI	GTAC	6 cut(s)	119, 208, 495, 602, 1112, 1133
DdeI	CTNAG	5 cut(s)	101, 663, 698, 853, 1047
DpnI	GATC	6 cut(s)	130, 135, 715, 731, 882, 917
DpnII	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	955
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	3 cut(s)	258, 605, 747
Eco24I	GRGCYC	2 cut(s)	79, 1045
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	698
EcoICRI	GAGCTC	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	258, 605, 747
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	79, 1045
ErhI	CCWWGG	3 cut(s)	258, 605, 747
FaeI	CATG	5 cut(s)	362, 431, 521, 551, 647
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	5 cut(s)	358, 427, 517, 547, 643
FokI	GGATG	4 cut(s)	393, 459, 730, 1095
FriOI	GRGCYC	2 cut(s)	79, 1045
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	654, 696, 898
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	3 cut(s)	85, 293, 351
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	362, 431, 521, 551, 647
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	8 cut(s)	56, 544, 633, 737, 754, 858, 891, 905
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	4 cut(s)	147, 635, 1043, 1086
Hpy166II	GTNNAC	3 cut(s)	208, 270, 1063
Hpy188I	TCNGA	2 cut(s)	133, 885
Hpy188III	TCNNGA	5 cut(s)	28, 541, 644, 855, 943
Hpy8I	GTNNAC	3 cut(s)	208, 270, 1063
HpyAV	CCTTC	3 cut(s)	793, 880, 1070
HpyCH4III	ACNGT	3 cut(s)	511, 790, 826
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	6 cut(s)	213, 240, 427, 431, 517, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 428, 845
HpyF3I	CTNAG	5 cut(s)	101, 663, 698, 853, 1047
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	5 cut(s)	362, 431, 521, 551, 647
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	1115
Kzo9I	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	7 cut(s)	82, 189, 331, 529, 543, 1003, 1048
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	5 cut(s)	153, 177, 415, 467, 874
MalI	GATC	6 cut(s)	130, 135, 715, 731, 882, 917
MboI	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
MboII	GAAGA	5 cut(s)	22, 724, 972, 983, 1001
MflI	RGATCY	3 cut(s)	133, 729, 880
MhlI	GDGCHC	2 cut(s)	79, 1045
MluCI	AATT	6 cut(s)	235, 321, 485, 590, 613, 794
MlyI	GAGTC	4 cut(s)	731, 852, 900, 914
MnlI	CCTC	4 cut(s)	168, 386, 605, 1022
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	6 cut(s)	90, 165, 216, 584, 612, 929
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	4 cut(s)	151, 275, 639, 911
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	102, 428, 845
NdeII	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
NlaIII	CATG	5 cut(s)	362, 431, 521, 551, 647
NlaIV	GGNNCC	3 cut(s)	374, 1044, 1113
NmeAIII	GCCGAG	1 cut(s)	924
NmuCI	GTSAC	2 cut(s)	153, 177
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	955
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	4 cut(s)	56, 544, 633, 754
PleI	GAGTC	4 cut(s)	731, 852, 899, 913
PpsI	GAGTC	4 cut(s)	731, 852, 899, 913
PpuMI	RGGWCCY	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	374, 1044, 1113
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	133, 729, 880
PvuII	CAGCTG	3 cut(s)	151, 275, 911
RsaI	GTAC	6 cut(s)	120, 209, 496, 603, 1113, 1134
RsaNI	GTAC	6 cut(s)	119, 208, 495, 602, 1112, 1133
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	6 cut(s)	90, 165, 216, 584, 612, 929
Sau3AI	GATC	6 cut(s)	128, 133, 713, 729, 880, 915
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	4 cut(s)	731, 852, 900, 914
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	79, 1045
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	1066
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	89, 389
SmoI	CTYRAG	2 cut(s)	89, 389
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	6 cut(s)	235, 321, 485, 590, 613, 794
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	3 cut(s)	258, 605, 747
TaaI	ACNGT	3 cut(s)	511, 790, 826
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	2 cut(s)	59, 735
TasI	AATT	6 cut(s)	235, 321, 485, 590, 613, 794
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	4 cut(s)	56, 544, 633, 754
Tru1I	TTAA	6 cut(s)	90, 165, 216, 584, 612, 929
Tru9I	TTAA	6 cut(s)	90, 165, 216, 584, 612, 929
TscAI	CASTG	2 cut(s)	194, 817
TseFI	GTSAC	2 cut(s)	153, 177
Tsp45I	GTSAC	2 cut(s)	153, 177
TspDTI	ATGAA	3 cut(s)	576, 581, 1045
TspGWI	ACGGA	2 cut(s)	490, 1120
TspRI	CASTG	2 cut(s)	194, 817
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	947
XapI	RAATTY	2 cut(s)	485, 590
XceI	RCATGY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.