Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

16057704 .. 16063127

Gene Structure 5424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTAGGGAATTGCAACAAAGGGGAAACCCCCAAGGACAGGTTCACAGCCGTTGTATCGTGGAGTATTTCTACTTTGCGTCCTATGATTTTTGGAATTGCTCCATACAACCCCATTCTTGGAGAAACTCATCATGCGTCAAGGGGGAACCTCAATGTTCTACTTGAGCAGATTTCACATCATCCACCAGTTACTGCGATGCATGCAACTGACGAGAAATCAAACATTGAAATGATATGGTGTAACCATCCTACTCCCAAATTCTATGGTACTTCCGTGGAAACTGAGGTGCATGGAAAAAGGGAGCTGAAGCTCCTGAATCATGGAGAAACTTATGAAATGAACGCCCCAAAACTTTTAATCAAATTCCTCCCAGTACCTTGGGTTAATTGGGTTGGTGAAAATAGAATCCGCTGTCATGAGACCGGCCTTGAAGCTGAGTTATACTATGGAAGCAGTTCCCTTTTTGGCCTTAGGGGAAATCCTAGATCAGTCAAGGGAAAGATCTTCGACTCATCATCCTTGGAGGTTCTTTATGAGATAGATGGTCAATGGGATAGAACTGTCAAATTGAAGGACGTTAGCAGTGGGAAAGAAACAGTTATATACAATGCAAAAGAATCCATCTCAGGACTCAAATCTCCTGTTGTTACAGATCCGAAGGGAGTCTGGCCGAGTGAGTCAGCTGTGGTCTGGGGTTTGTTAAGCCAATCTATTCTGAACAAGGACTGGGGAAGAGCAAGAGAAGAAAAGAAAGAAGTTGAAGAAAAACAAAGGGAGCTATTTAGAGAAAGAGAAGCCAGAGGTGAAACTTGGGCTCCTAAGCATTTCATTGTGAACTATAGCAAAGAAGGTGGATGGGATTGCTCACCCATTCACAAGTGGGTACCACCAGCCCCCATATCTGTACCCATCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

306

Amino Acids

34.6

Weight (kDa)

7.18

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	5 - 204	1.9e-39	Oxysterol-binding protein
Oxysterol_BP	PF01237	239 - 280	2.1e-06	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	886
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	2 cut(s)	260, 365
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	4 cut(s)	271, 378, 888, 909
AfiI	CCNNNNNNNGG	2 cut(s)	39, 119
AgsI	TTSAA	4 cut(s)	230, 434, 574, 764
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	5 cut(s)	307, 313, 437, 686, 781
AluI	AGCT	5 cut(s)	307, 313, 437, 686, 781
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	427, 469, 671
ApoI	RAATTY	2 cut(s)	260, 365
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	886
AsuHPI	GGTGA	3 cut(s)	410, 818, 861
AxyI	CCTNAGG	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	820
BccI	CCATC	5 cut(s)	255, 539, 632, 852, 920
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	841
BglII	AGATCT	1 cut(s)	504
BmiI	GGNNCC	3 cut(s)	149, 819, 888
BmrI	ACTGGG	2 cut(s)	368, 739
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	2 cut(s)	368, 739
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	4 cut(s)	33, 276, 380, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 119
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	188, 374, 734
Bse21I	CCTNAGG	1 cut(s)	473
BseDI	CCNNGG	4 cut(s)	33, 276, 380, 522
BseGI	GGATG	4 cut(s)	181, 247, 518, 863
BseLI	CCNNNNNNNGG	2 cut(s)	39, 119
BseMII	CTCAG	3 cut(s)	276, 429, 642
BseNI	ACTGG	3 cut(s)	188, 374, 734
BshFI	GGCC	3 cut(s)	429, 471, 673
BshNI	GGYRCC	1 cut(s)	886
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	39, 119
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	429, 471, 673
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	3 cut(s)	488, 504, 655
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	429, 471, 673
BspCNI	CTCAG	3 cut(s)	277, 430, 641
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	149, 819, 888
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	886
BspTNI	GGTCTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	188, 374, 734
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	33, 276, 380, 522
BssMI	GATC	3 cut(s)	488, 504, 655
BssT1I	CCWWGG	3 cut(s)	33, 380, 522
Bst4CI	ACNGT	2 cut(s)	565, 601
Bst6I	CTCTTC	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	5 cut(s)	285, 438, 473, 628, 822
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	4 cut(s)	181, 247, 518, 863
BstKTI	GATC	3 cut(s)	491, 507, 658
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	488, 504, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	504, 655
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	2 cut(s)	504, 655
Bsu36I	CCTNAGG	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	429, 471, 673
BtgI	CCRYGG	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	4 cut(s)	181, 247, 518, 863
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	425
CseI	GACGC	2 cut(s)	68, 126
Csp6I	GTAC	4 cut(s)	270, 377, 887, 908
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	5 cut(s)	134, 203, 293, 323, 419
CviQI	GTAC	4 cut(s)	270, 377, 887, 908
DdeI	CTNAG	5 cut(s)	285, 438, 473, 628, 822
DpnI	GATC	3 cut(s)	490, 506, 657
DpnII	GATC	3 cut(s)	488, 504, 655
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
Eco130I	CCWWGG	3 cut(s)	33, 380, 522
Eco24I	GRGCYC	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	473
EcoT14I	CCWWGG	3 cut(s)	33, 380, 522
EcoT22I	ATGCAT	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	3 cut(s)	33, 380, 522
FaeI	CATG	5 cut(s)	137, 206, 296, 326, 422
FatI	CATG	5 cut(s)	133, 202, 292, 322, 418
FokI	GGATG	4 cut(s)	168, 234, 505, 870
FriOI	GRGCYC	1 cut(s)	820
FspBI	CTAG	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	429, 471, 673
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	2 cut(s)	68, 126
Hin1II	CATG	5 cut(s)	137, 206, 296, 326, 422
HinfI	GANTC	7 cut(s)	319, 408, 512, 620, 633, 666, 680
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	3 cut(s)	410, 818, 861
Hpy166II	GTNNAC	2 cut(s)	45, 838
Hpy188I	TCNGA	2 cut(s)	660, 720
Hpy188III	TCNNGA	3 cut(s)	316, 419, 630
Hpy8I	GTNNAC	2 cut(s)	45, 838
HpyAV	CCTTC	3 cut(s)	568, 655, 845
HpyCH4III	ACNGT	2 cut(s)	565, 601
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	15, 202, 206, 292, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	5 cut(s)	285, 438, 473, 628, 822
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	5 cut(s)	137, 206, 296, 326, 422
KpnI	GGTACC	1 cut(s)	890
Kzo9I	GATC	3 cut(s)	488, 504, 655
LguI	GCTCTTC	1 cut(s)	730
LmnI	GCTCC	5 cut(s)	106, 304, 318, 778, 823
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	190, 242, 649
MalI	GATC	3 cut(s)	490, 506, 657
MboI	GATC	3 cut(s)	488, 504, 655
MboII	GAAGA	4 cut(s)	499, 747, 758, 776
MflI	RGATCY	2 cut(s)	504, 655
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	6 cut(s)	10, 96, 260, 365, 388, 569
MlyI	GAGTC	4 cut(s)	506, 627, 675, 689
MnlI	CCTC	5 cut(s)	161, 280, 380, 520, 797
Mph1103I	ATGCAT	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	3 cut(s)	359, 387, 704
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	414, 686
MspI	CCGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	3 cut(s)	488, 504, 655
NlaIII	CATG	5 cut(s)	137, 206, 296, 326, 422
NlaIV	GGNNCC	3 cut(s)	149, 819, 888
NmeAIII	GCCGAG	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	204
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	319, 408, 620
PleI	GAGTC	4 cut(s)	506, 627, 674, 688
PpsI	GAGTC	4 cut(s)	506, 627, 674, 688
PspN4I	GGNNCC	3 cut(s)	149, 819, 888
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	504, 655
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	4 cut(s)	271, 378, 888, 909
RsaNI	GTAC	4 cut(s)	270, 377, 887, 908
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	730
SaqAI	TTAA	3 cut(s)	359, 387, 704
Sau3AI	GATC	3 cut(s)	488, 504, 655
SchI	GAGTC	4 cut(s)	506, 627, 675, 689
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	841
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	6 cut(s)	10, 96, 260, 365, 388, 569
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	486
StyI	CCWWGG	3 cut(s)	33, 380, 522
TaaI	ACNGT	2 cut(s)	565, 601
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	510
TasI	AATT	6 cut(s)	10, 96, 260, 365, 388, 569
TfiI	GAWTC	3 cut(s)	319, 408, 620
Tru1I	TTAA	3 cut(s)	359, 387, 704
Tru9I	TTAA	3 cut(s)	359, 387, 704
TscAI	CASTG	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	351, 356, 820
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	260, 365
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.