Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004160

Physical Location & Seq

Genomic Coordinates Forward (+)

18226039 .. 18229158

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTGTGCAGGTCAAGGAGGAGGAGGAGAATTCCAGAGTTATTTTCTTGACAAAGCCATTGTCATTAGAAGGGGACTGCGATGTTGATTACAGAGCTCCTAATCTACTTAAACGTGTTCTGAGTCTGTTTAAAAACGTACGTCCAGGATCTGATCTCACACGCTTCCAGCTGTCACCGCTGTTTAACATTCCCAAGTCACACCTCCAGTGTTTTGGTGAATCAGTGTACTGCGTTGGTAATGATTTGTTAGGAAGGTGCAACAGAGCGGAGACCCCTCATGACAGGTTCACAGCTGTTGTATCATGGAGCATTTCTACATTGCGTCCTATGATCTTCGGAATTGTTCCTTACAACCCCATTCTTGGAGAAACCCATCATGTTACAAGGGGGAACCTCAATGTTCTACTTGAGCAGGTATCACATCATCCACCAGTTACCGCTCTTCGTGCAACTGATGAAAAAGAAAACCTTGAAATGATCTGGTGTCAACATCCTACTCCCAAATTCTATGGTACTTCAGTGGAAACGGAGGTGCATGGAAAACGTCAGTTGAAGCTCTTGAATCATGGAGAAACTTATGAAATGAACTCACCAAAACTCTTGATAAAGTTCCTCCCATTACCTTGGGTTGATTGGGTTGGTGAAAACAGAATCCGGTGTCATGAGACGGGCCTTGAAGCTGAGTTATATTATGGAAGCAATTCATGGATTAGGGGAAATCCTAGAACAATTAAGGGAAGGATCTTTGACTCAACAACATTCGAGCTTCTTTATGAGATACATGGTCAGTGGGATAGAACTGTCAAAATGAAGGACGTTAGTAGCGGGAAAGAAACCGTTATATACAATGCAAAAGAAGCCATTTCGGGACTGAAAGCTCCGATTGTTACCGATTTGAAGGGGGTTTGGCCGAGTGAATCAGCTGTGATCTGGGGAGTGCTGAGCCAAGCAATTCTTGGGAAGGACTGGAACAAAGCAAGAGAGGCAAAGAAAGCAGTGGAAGAAAAACAGAGGGAGCTGCTGAGAGAGAGGGAAGCAAAAGGTGAAACTTGGGTTCCCAACCATTTTAGAGTCACTCATAGCAAAGAAGGTGGTGGGTGGGACTGCGCACCCATCCAGCAATGGGTGCCACCAGCTCCTATTTCTGTACCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

387

Amino Acids

43.91

Weight (kDa)

7.66

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25850 AT4G25850 AT4G25850 AT4G25860 AT4G25860 AT5G57240 AT5G57240 AT5G57240 AT5G57240 AT5G57240
fragaria_vesca	FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390 FvH4_4g07390
malus_domestica	MD13G1243400.v1.1 MD16G1249900.v1.1
prunus_persica	Prupe.1G076800_v2.0.a1 Prupe.1G076800_v2.0.a1
pyrus_communis	pycom13g21480
rosa_chinensis	RchiOBHm_Chr4g0399831
rosa_laevigata	RLG00000009239
rosa_multiflora	Rmu_sc0014676.1_g000015
rosa_roxburghii	Rroxscaffold_5G00344720
rosa_rugosa	Rorug04G0019100 Rorug04G0019200 Rorug04G0019300
rosa_samantha	Rh4AG096600 Rh4BG094000 Rh4CG105700 Rh4DG090600
rosa_wichuraiana	Rw4G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1111
Acc36I	ACCTGC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	1129
AccBSI	CCGCTC	2 cut(s)	269, 443
AciI	CCGC	4 cut(s)	179, 269, 441, 828
AclWI	GGATC	2 cut(s)	157, 752
AcoI	YGGCCR	1 cut(s)	911
AcsI	RAATTY	2 cut(s)	31, 506
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	4 cut(s)	141, 230, 517, 1152
AfiI	CCNNNNNNNGG	2 cut(s)	365, 1126
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	5 cut(s)	476, 556, 565, 680, 901
AjnI	CCWGG	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	266, 662
AlwI	GGATC	2 cut(s)	157, 752
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	673, 911
ApeKI	GCWGC	1 cut(s)	1021
ApoI	RAATTY	2 cut(s)	31, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	1112
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	5 cut(s)	168, 230, 585, 656, 1058
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BanI	GGYRCC	1 cut(s)	1129
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	1008
BccI	CCATC	2 cut(s)	384, 1124
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	266, 662
BfaI	CTAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	1022
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	1 cut(s)	1023
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	3 cut(s)	395, 1059, 1131
BmrFI	CCNGG	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 1126
Bse1I	ACTGG	3 cut(s)	208, 434, 974
Bse3DI	GCAATG	2 cut(s)	320, 1130
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	3 cut(s)	427, 493, 1116
BseLI	CCNNNNNNNGG	2 cut(s)	365, 1126
BseMI	GCAATG	2 cut(s)	320, 1130
BseMII	CTCAG	4 cut(s)	113, 675, 935, 1016
BseNI	ACTGG	3 cut(s)	208, 434, 974
BseRI	GAGGAG	3 cut(s)	35, 38, 41
BseXI	GCAGC	1 cut(s)	1008
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	675, 913
BshNI	GGYRCC	1 cut(s)	1129
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	658
BsiWI	CGTACG	1 cut(s)	139
BslFI	GGGAC	3 cut(s)	89, 885, 1118
BslI	CCNNNNNNNGG	2 cut(s)	365, 1126
BsmAI	GTCTC	2 cut(s)	266, 662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	3 cut(s)	89, 885, 1118
BsnI	GGCC	2 cut(s)	675, 913
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
Bsp1720I	GCTNAGC	1 cut(s)	944
BspACI	CCGC	4 cut(s)	179, 269, 441, 828
BspANI	GGCC	2 cut(s)	675, 913
BspCNI	CTCAG	4 cut(s)	114, 676, 936, 1017
BspHI	TCATGA	2 cut(s)	280, 664
BspLI	GGNNCC	3 cut(s)	395, 1059, 1131
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	157, 752
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	1129
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	2 cut(s)	269, 443
BsrDI	GCAATG	2 cut(s)	320, 1130
BsrI	ACTGG	3 cut(s)	208, 434, 974
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	805, 841
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	1129
BstDEI	CTNAG	4 cut(s)	122, 684, 944, 1025
BstF5I	GGATG	3 cut(s)	427, 493, 1116
BstHHI	GCGC	1 cut(s)	1112
BstKTI	GATC	6 cut(s)	152, 157, 336, 483, 747, 933
BstMAI	GTCTC	2 cut(s)	266, 662
BstMBI	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 449, 860, 986, 995, 1129
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	1008
BstX2I	RGATCY	2 cut(s)	149, 744
BstXI	CCANNNNNNTGG	2 cut(s)	215, 627
BstYI	RGATCY	2 cut(s)	149, 744
BsuRI	GGCC	2 cut(s)	675, 913
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	427, 493, 1116
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	5 cut(s)	215, 231, 528, 797, 1005
BveI	ACCTGC	1 cut(s)	406
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	2 cut(s)	280, 664
CfoI	GCGC	1 cut(s)	1112
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	140, 229, 516, 1151
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
CviAII	CATG	8 cut(s)	281, 306, 380, 539, 569, 665, 708, 785
CviQI	GTAC	4 cut(s)	140, 229, 516, 1151
DdeI	CTNAG	4 cut(s)	122, 684, 944, 1025
DpnI	GATC	6 cut(s)	151, 156, 335, 482, 746, 932
DpnII	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	911
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	626
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	8 cut(s)	284, 309, 383, 542, 572, 668, 711, 788
FalI	AAGNNNNNCTT	4 cut(s)	456, 488, 942, 974
FaqI	GGGAC	3 cut(s)	89, 885, 1118
FatI	CATG	8 cut(s)	280, 305, 379, 538, 568, 664, 707, 784
FauI	CCCGC	1 cut(s)	821
Fnu4HI	GCNGC	1 cut(s)	1022
FokI	GGATG	3 cut(s)	414, 480, 1103
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	1022
FspBI	CTAG	1 cut(s)	726
FspI	TGCGCA	1 cut(s)	1111
GlaI	GCGC	1 cut(s)	1111
GluI	GCNGC	1 cut(s)	1022
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	675, 913
HapII	CCGG	1 cut(s)	658
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	1112
Hin1II	CATG	8 cut(s)	284, 309, 383, 542, 572, 668, 711, 788
Hin6I	GCGC	1 cut(s)	1110
HinP1I	GCGC	1 cut(s)	1110
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HinfI	GANTC	7 cut(s)	124, 221, 565, 654, 752, 920, 1074
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	5 cut(s)	168, 230, 585, 656, 1058
Hpy166II	GTNNAC	3 cut(s)	229, 291, 491
Hpy188I	TCNGA	4 cut(s)	123, 154, 341, 885
Hpy188III	TCNNGA	7 cut(s)	36, 49, 281, 562, 604, 665, 870
Hpy8I	GTNNAC	3 cut(s)	229, 291, 491
HpyAV	CCTTC	7 cut(s)	65, 249, 735, 808, 895, 958, 1085
HpyCH4III	ACNGT	2 cut(s)	805, 841
HpyCH4IV	ACGT	5 cut(s)	115, 138, 142, 547, 819
HpyCH4V	TGCA	5 cut(s)	10, 261, 452, 538, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 449, 860, 986, 995, 1129
HpyF3I	CTNAG	4 cut(s)	122, 684, 944, 1025
HpySE526I	ACGT	5 cut(s)	115, 138, 142, 547, 819
Hsp92II	CATG	8 cut(s)	284, 309, 383, 542, 572, 668, 711, 788
HspAI	GCGC	1 cut(s)	1110
Kzo9I	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	5 cut(s)	103, 309, 886, 1018, 1144
Lsp1109I	GCAGC	1 cut(s)	1008
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	5 cut(s)	115, 138, 142, 547, 819
MaeIII	GTNAC	6 cut(s)	174, 198, 382, 436, 889, 1075
MalI	GATC	6 cut(s)	151, 156, 335, 482, 746, 932
MbiI	CCGCTC	2 cut(s)	269, 443
MboI	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
MboII	GAAGA	3 cut(s)	328, 437, 1016
MflI	RGATCY	2 cut(s)	149, 744
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	6 cut(s)	31, 342, 506, 703, 732, 954
MlyI	GAGTC	3 cut(s)	133, 746, 1083
MroXI	GAANNNNTTC	1 cut(s)	703
MseI	TTAA	4 cut(s)	111, 132, 186, 735
MspA1I	CMGCKG	4 cut(s)	172, 181, 296, 926
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	178, 449, 860, 986, 995, 1129
NdeII	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
NlaIII	CATG	8 cut(s)	284, 309, 383, 542, 572, 668, 711, 788
NlaIV	GGNNCC	3 cut(s)	395, 1059, 1131
NmeAIII	GCCGAG	1 cut(s)	939
NmuCI	GTSAC	3 cut(s)	174, 198, 1075
NsbI	TGCGCA	1 cut(s)	1111
PagI	TCATGA	2 cut(s)	280, 664
PciSI	GCTCTTC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	4 cut(s)	221, 565, 654, 920
Pfl23II	CGTACG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	1023
PleI	GAGTC	3 cut(s)	132, 746, 1082
PpsI	GAGTC	3 cut(s)	132, 746, 1082
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspLI	CGTACG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	395, 1059, 1131
PspPI	GGNCC	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	149, 744
PvuII	CAGCTG	3 cut(s)	172, 296, 926
RsaI	GTAC	4 cut(s)	141, 230, 517, 1152
RsaNI	GTAC	4 cut(s)	140, 229, 516, 1151
SacI	GAGCTC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	111, 132, 186, 735
SatI	GCNGC	1 cut(s)	1022
Sau3AI	GATC	6 cut(s)	149, 154, 333, 480, 744, 930
Sau96I	GGNCC	1 cut(s)	673
SchI	GAGTC	3 cut(s)	133, 746, 1083
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	31, 342, 506, 703, 732, 954
SsiI	CCGC	4 cut(s)	179, 269, 441, 828
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	2 cut(s)	805, 841
TaiI	ACGT	5 cut(s)	118, 141, 145, 550, 822
TaqI	TCGA	1 cut(s)	765
TasI	AATT	6 cut(s)	31, 342, 506, 703, 732, 954
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	4 cut(s)	221, 565, 654, 920
Tru1I	TTAA	4 cut(s)	111, 132, 186, 735
Tru9I	TTAA	4 cut(s)	111, 132, 186, 735
TscAI	CASTG	5 cut(s)	215, 231, 528, 797, 1005
TseFI	GTSAC	3 cut(s)	174, 198, 1075
TseI	GCWGC	1 cut(s)	1021
Tsp45I	GTSAC	3 cut(s)	174, 198, 1075
TspDTI	ATGAA	5 cut(s)	474, 597, 602, 696, 827
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	5 cut(s)	215, 231, 528, 797, 1005
XapI	RAATTY	2 cut(s)	31, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	956
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.