Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

23273067 .. 23274976

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCAAAATGGGAAAATTAAGCCGGAGAATCTCCTCCGACGATCGCCGACGAATCGTAAACTAACCACAGGCTGTGAAATCCTCGACGGATGTCTTCGCGGCGGAATTTCCTGCGATTCTTTAACCGAAATCGTTGCGGAGAGTGGCTGCGGAAAGACACAGCTCTGCCTTCAGCTTTCGCTCTGTACCCAACTTCCGATTTCACACGGCGGACTCAACGGTTCTTCTCTTTATCTCCATTCAGAGTTCCCATTTCCGTTTCGTCGTCTCCATCAGCTCTCGCACACGTTTCATCAATCAAACCCTAGTATTTACGCGAATTACAATGATAATCCTTGTGATCATGTGTTTGTACAAAATGTCCATTCTGTAGACCACCTGTTCGACATAATGCCTAGGATAGATGGGTTTGTTGGGAATTCGAAAACTAGGTTTCCGTTGAAGTTGATTGTGCTTGATTCTGTAGCGGCATTGTTTAGATCGGAGTTTGATAATACTCCGTCTGATCTTAAGAAGAGATCTTCTTTGTTTTTCAAGATATCTGGGAAATTGAAGCAGTTGGCTAGCAAGTTTGATTTGGCTATTGTGATTACGAATCAGGTTACGGATTTGGTTGAAACTTCTGATGGGTTAAGTGGGCTGAGGATTGGGAATTTGAGGTATTTGTATTCGTCTGGAAGACGAGTTGTTCCTTCTTTAGGCTTGGCTTGGGCTAATTGTGTGAATTCCAGATTTTTTATTTCACGAAGTGATGGTAGTATTGTTAAAGATAGAAGTGAAAAGGACGAGAATTGTTCAAGTTCTGTGTCCAGAAGTGCTAAGAGACGGCTTGACATAGTGTTTTCACCTTATTTGCCTGGGAGTTCTTGCGAGTTCATGATCACACGAGAGGGGATTTGTGCGGTTCAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

304

Amino Acids

33.73

Weight (kDa)

8.96

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	20 - 207	2.4e-30	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	99, 317
AciI	CCGC	7 cut(s)	99, 102, 137, 150, 210, 467, 902
AcsI	RAATTY	4 cut(s)	105, 418, 652, 724
AcuI	CTGAAG	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	749
AfaI	GTAC	2 cut(s)	187, 354
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflII	CTTAAG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	442, 535, 553, 617, 798, 908
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	3 cut(s)	163, 175, 277
AluI	AGCT	3 cut(s)	163, 175, 277
Alw26I	GTCTC	2 cut(s)	272, 817
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	4 cut(s)	105, 418, 652, 724
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspA2I	CCTAGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	837
AsuII	TTCGAA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	563
AvrII	CCTAGG	1 cut(s)	395
BauI	CACGAG	1 cut(s)	885
BbsI	GAAGAC	2 cut(s)	86, 685
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	4 cut(s)	279, 398, 620, 746
BceAI	ACGGC	2 cut(s)	223, 842
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	858
BclI	TGATCA	2 cut(s)	340, 879
BcoDI	GTCTC	2 cut(s)	272, 817
BfaI	CTAG	4 cut(s)	306, 396, 429, 564
BfmI	CTRYAG	2 cut(s)	369, 462
BfrI	CTTAAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	3 cut(s)	100, 148, 468
BlnI	CCTAGG	1 cut(s)	395
BlsI	GCNGC	3 cut(s)	101, 149, 469
Bme1390I	CCNGG	1 cut(s)	858
BmrFI	CCNGG	1 cut(s)	858
BmtI	GCTAGC	1 cut(s)	567
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	2 cut(s)	86, 685
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	395, 857
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	395, 857
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMII	CTCAG	1 cut(s)	632
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	99, 317
Bsh1285I	CGRYCG	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	2 cut(s)	272, 817
BsmBI	CGTCTC	2 cut(s)	272, 817
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
BspACI	CCGC	7 cut(s)	99, 102, 137, 150, 210, 467, 902
BspCNI	CTCAG	1 cut(s)	633
BspFNI	CGCG	2 cut(s)	99, 317
BspHI	TCATGA	1 cut(s)	876
BspOI	GCTAGC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	395, 857
BssMI	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
BssSI	CACGAG	1 cut(s)	885
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	885
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	509
BstAFI	CTTAAG	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	352
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	2 cut(s)	641, 819
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	99, 317
BstKTI	GATC	6 cut(s)	44, 343, 482, 508, 521, 882
BstMAI	GTCTC	2 cut(s)	272, 817
BstMBI	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	908
BstNI	CCWGG	1 cut(s)	858
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	2 cut(s)	369, 462
BstUI	CGCG	2 cut(s)	99, 317
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	2 cut(s)	86, 685
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	186, 353
CviAII	CATG	2 cut(s)	344, 877
CviQI	GTAC	2 cut(s)	186, 353
DdeI	CTNAG	2 cut(s)	641, 819
DpnI	GATC	6 cut(s)	43, 342, 481, 507, 520, 881
DpnII	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
DraIII	CACNNNGTG	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	117, 225
Eco130I	CCWWGG	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRI	GAATTC	2 cut(s)	418, 724
EcoRII	CCWGG	1 cut(s)	856
EcoRV	GATATC	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
Esp3I	CGTCTC	2 cut(s)	272, 817
FaeI	CATG	2 cut(s)	347, 880
FaiI	YATR	4 cut(s)	345, 389, 836, 878
FatI	CATG	2 cut(s)	343, 876
FbaI	TGATCA	2 cut(s)	340, 879
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	100, 148, 468
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	100, 148, 468
FspBI	CTAG	4 cut(s)	306, 396, 429, 564
GluI	GCNGC	3 cut(s)	100, 148, 468
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	347, 880
HinfI	GANTC	6 cut(s)	28, 52, 116, 213, 458, 595
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	837
Hpy166II	GTNNAC	2 cut(s)	59, 373
Hpy188I	TCNGA	6 cut(s)	38, 198, 244, 484, 505, 625
Hpy188III	TCNNGA	6 cut(s)	535, 675, 729, 744, 810, 877
Hpy8I	GTNNAC	2 cut(s)	59, 373
Hpy99I	CGWCG	4 cut(s)	42, 52, 89, 267
HpyAV	CCTTC	2 cut(s)	179, 702
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	908
HpyF3I	CTNAG	2 cut(s)	641, 819
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	347, 880
Ksp22I	TGATCA	2 cut(s)	340, 879
Kzo9I	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	4 cut(s)	306, 396, 429, 564
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	6 cut(s)	43, 342, 481, 507, 520, 881
MboI	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
MboII	GAAGA	5 cut(s)	86, 216, 513, 526, 690
MflI	RGATCY	1 cut(s)	518
MluCI	AATT	9 cut(s)	15, 105, 319, 418, 548, 652, 715, 724, 790
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	44, 92, 636, 651, 883
MseI	TTAA	5 cut(s)	18, 122, 510, 632, 765
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	858
MvnI	CGCG	2 cut(s)	99, 317
MwoI	GCNNNNNNNGC	1 cut(s)	908
NdeII	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	2 cut(s)	347, 880
NspV	TTCGAA	1 cut(s)	422
PagI	TCATGA	1 cut(s)	876
PfeI	GAWTC	5 cut(s)	28, 52, 116, 458, 595
PkrI	GCNGC	3 cut(s)	101, 149, 469
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PshAI	GACNNNNGTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PsuI	RGATCY	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	187, 354
RsaNI	GTAC	2 cut(s)	186, 353
SaqAI	TTAA	5 cut(s)	18, 122, 510, 632, 765
SatI	GCNGC	3 cut(s)	100, 148, 468
Sau3AI	GATC	6 cut(s)	41, 340, 479, 505, 518, 879
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	858
SetI	ASST	9 cut(s)	165, 177, 279, 290, 381, 434, 603, 662, 850
SfcI	CTRYAG	2 cut(s)	369, 462
SfuI	TTCGAA	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	9 cut(s)	15, 105, 319, 418, 548, 652, 715, 724, 790
SsiI	CCGC	7 cut(s)	99, 102, 137, 150, 210, 467, 902
SspMI	CTAG	4 cut(s)	306, 396, 429, 564
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	84, 384, 422
TasI	AATT	9 cut(s)	15, 105, 319, 418, 548, 652, 715, 724, 790
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	2 cut(s)	102, 470
TfiI	GAWTC	5 cut(s)	28, 52, 116, 458, 595
Tru1I	TTAA	5 cut(s)	18, 122, 510, 632, 765
Tru9I	TTAA	5 cut(s)	18, 122, 510, 632, 765
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	281, 865
TspGWI	ACGGA	5 cut(s)	102, 246, 426, 489, 620
Vha464I	CTTAAG	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	4 cut(s)	105, 418, 652, 724
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	4 cut(s)	306, 396, 429, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.