Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

24433983 .. 24442438

Gene Structure 8456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATTTCGCCTCTTCAGGCGTAATTTTCAAGTTCTGCCCAACTGTCACAGCGGATGTGAATTTCAGGATTCTGATGCTCTTCATCGCCACTCTTCCTCTCTCTTGGATTTGATGGCAAGCAAATTGAGTTTTGTAAAATTGAATCTTGGTATTAAGCTTTGTGGTGTTTGGGTTGCTGGCAAGGAACTGGAACAGGCGGCATTCCTAGCACAGCTTGAATCGGAGTATCAAAATGTGTTGATGGTGCTGCTAGTCAAGGGATTGAGCTGGAATGAATGGTATGGTCTTGATTTGTTCATGCACTTGAGGCCAGTGGAGAGATTCCTCCTGAGATCAGAAAGATGGGCAGCTTGGAAGGAAACTGAAGCATATGAGAAGCATAGATATCAACTCCAACTCAAGGAGGCCATTAGTAGCAATGACAACAAAACTTGTGCATTCTTAGCTTACAAGGACTACCAGGGAACCAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.6

Weight (kDa)

8.33

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 200
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	32, 145, 221
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	5 cut(s)	160, 217, 270, 353, 449
AluI	AGCT	5 cut(s)	160, 217, 270, 353, 449
AoxI	GGCC	2 cut(s)	311, 408
ApeKI	GCWGC	2 cut(s)	250, 350
ApoI	RAATTY	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	237, 362
BccI	CCATC	3 cut(s)	109, 238, 339
BciT130I	CCWGG	1 cut(s)	464
BfaI	CTAG	2 cut(s)	209, 254
BisI	GCNGC	3 cut(s)	201, 251, 351
BlsI	GCNGC	3 cut(s)	202, 252, 352
Bme1390I	CCNGG	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	328, 386
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	195, 314
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	195, 314
BseXI	GCAGC	2 cut(s)	237, 362
BshFI	GGCC	2 cut(s)	313, 410
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmI	GAATGC	2 cut(s)	203, 440
BsnI	GGCC	2 cut(s)	313, 410
Bsp143I	GATC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	54, 200
BspANI	GGCC	2 cut(s)	313, 410
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	195, 314
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	3 cut(s)	20, 87, 100
BstC8I	GCNNGC	2 cut(s)	121, 181
BstDEI	CTNAG	2 cut(s)	332, 445
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 310, 446
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	237, 362
BsuRI	GGCC	2 cut(s)	313, 410
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	121, 181
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	160, 217, 270, 313, 353, 410, 449
CviKI_1	RGCY	7 cut(s)	160, 217, 270, 313, 353, 410, 449
DdeI	CTNAG	2 cut(s)	332, 445
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
Eam1104I	CTCTTC	3 cut(s)	20, 87, 100
EarI	CTCTTC	3 cut(s)	20, 87, 100
Eco32I	GATATC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	462
EcoRV	GATATC	1 cut(s)	389
FaeI	CATG	1 cut(s)	304
FaiI	YATR	5 cut(s)	285, 302, 373, 375, 384
FatI	CATG	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	201, 251, 351
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	201, 251, 351
FspBI	CTAG	2 cut(s)	209, 254
GluI	GCNGC	3 cut(s)	201, 251, 351
HaeIII	GGCC	2 cut(s)	313, 410
Hin1II	CATG	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	71, 145, 221, 324
Hpy188I	TCNGA	3 cut(s)	76, 226, 340
Hpy188III	TCNNGA	3 cut(s)	68, 290, 331
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	304, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 310, 446
HpyF3I	CTNAG	2 cut(s)	332, 445
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	87
Lsp1109I	GCAGC	2 cut(s)	237, 362
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	209, 254
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	3 cut(s)	7, 74, 87
MluCI	AATT	4 cut(s)	25, 62, 125, 140
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	5 cut(s)	23, 109, 303, 338, 400
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	464
Mva1269I	GAATGC	2 cut(s)	203, 440
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	209, 310, 446
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	87
PctI	GAATGC	2 cut(s)	203, 440
PfeI	GAWTC	4 cut(s)	71, 145, 221, 324
PkrI	GCNGC	3 cut(s)	202, 252, 352
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	201, 251, 351
Sau3AI	GATC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	5 cut(s)	162, 219, 272, 355, 451
SfaNI	GCATC	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	307, 401
SmoI	CTYRAG	2 cut(s)	307, 401
Sse9I	AATT	4 cut(s)	25, 62, 125, 140
SsiI	CCGC	2 cut(s)	54, 200
SspMI	CTAG	2 cut(s)	209, 254
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	4 cut(s)	25, 62, 125, 140
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	4 cut(s)	71, 145, 221, 324
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	250, 350
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	74, 289, 291
TspRI	CASTG	1 cut(s)	321
XapI	RAATTY	1 cut(s)	62
XspI	CTAG	2 cut(s)	209, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.