Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003253

Physical Location & Seq

Genomic Coordinates Reverse (-)

24616159 .. 24618945

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATGCTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGACGAACCAGGTGGCTGATTTTATGGGGGAAATAGAGGGGATAAATGGGATGAGAGTTGGGTCAAATTCCGTGAATTCAAGGTTGTTCTTGTCTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATTGGTTGGAGGATGATATGTTCAGGCAAACAAGAAGGCACCTTGATGTTGTTTTTGCTCCTCATTTGCTGCCATCGTCTTACGTGCCTTTGGTTGGCTCTTCTTCTCTGTTACCTACTGAAATAATGGCAGTGCAGGCTGGTCTACAGTTGATCACTGATGCAGCTATTCTGCCTGTGTTGCCGAAAATGGATTGCTTGGAATTGTTTTGTGGTGTTTGGGTTGCTGGCAAGGAACTGGAACTATCACAGCTTGAATCAGAGCATCAACATATGTTGATGGTGCTGCTAGTCAAGGGATTGAGCTGGAATGAATGGACAGGGCGGGAAGAGAACATGAAGGCTCGGACTGTGACACTGCAACTCCCAGCGGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

234

Amino Acids

26.41

Weight (kDa)

5.87

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	16 - 72	9.2e-07	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57450 AT5G57450
fragaria_vesca	FvH4_4g08250 FvH4_4g08251
malus_domestica	MD06G1167000.v1.1 MD14G1172600.v1.1
prunus_persica	Prupe.1G061700_v2.0.a1
pyrus_communis	pycom06g14950
rosa_chinensis	RchiOBHm_Chr4g0402491 RchiOBHm_Chr4g0402521
rosa_laevigata	RLG00000009070 RLG00000009076 RLG00000009078 RLG00000009079
rosa_multiflora	Rmu_sc0000727.1_g000022 Rmu_ssc0000330.1_g000031 Rmu_ssc0000330.1_g000046 Rmu_ssc0000330.1_g000047
rosa_roxburghii	Rroxscaffold_2G00117490 Rroxscaffold_5G00347180
rosa_rugosa	Rorug04G0035800 Rorug04G0035900 Rorug04G0036000.1 Rorug04G0036100
rosa_samantha	Rh4AG113100 Rh4AG113300 Rh4AG113500 Rh4AG113800 Rh4AG114000 Rh4BG105700 Rh4BG105900 Rh4CG120200 Rh4DG105100 Rh5BG409500 Rh5CG434300
rosa_wichuraiana	Rw4G009080 Rw5G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	5 cut(s)	78, 124, 191, 649, 695
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	95, 265, 274
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	279, 581
AjnI	CCWGG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	186, 491, 577, 630
AluI	AGCT	4 cut(s)	186, 491, 577, 630
AlwI	GGATC	1 cut(s)	123
ApeKI	GCWGC	5 cut(s)	43, 90, 394, 488, 610
ApoI	RAATTY	3 cut(s)	95, 265, 274
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	40, 154
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	363
BbvI	GCAGC	5 cut(s)	30, 102, 381, 500, 597
BccI	CCATC	2 cut(s)	406, 598
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	2 cut(s)	40, 154
BfaI	CTAG	2 cut(s)	294, 614
BfmI	CTRYAG	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	6 cut(s)	44, 78, 91, 395, 489, 611
BlsI	GCNGC	6 cut(s)	45, 79, 92, 396, 490, 612
Bme1390I	CCNGG	3 cut(s)	40, 154, 209
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	3 cut(s)	40, 154, 209
BmsI	GCATC	3 cut(s)	147, 475, 598
BpuMI	CCSGG	2 cut(s)	40, 154
BsaAI	YACGTR	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	162, 255, 343
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	2 cut(s)	317, 375
BseXI	GCAGC	5 cut(s)	30, 102, 381, 500, 597
BseYI	CCCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	40, 153
BslI	CCNNNNNNNGG	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	115, 477
BspACI	CCGC	5 cut(s)	78, 124, 191, 649, 695
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	123
BspQI	GCTCTTC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	115, 477
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	474, 676
Bst6I	CTCTTC	2 cut(s)	430, 648
BstAFI	CTTAAG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	28, 462, 553
BstF5I	GGATG	3 cut(s)	162, 255, 343
BstKTI	GATC	2 cut(s)	118, 480
BstMBI	GATC	2 cut(s)	115, 477
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 99, 461, 505
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	38, 152, 207
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	5 cut(s)	30, 102, 381, 500, 597
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	162, 255, 343
BtsI	GCAGTG	2 cut(s)	462, 680
BtsIMutI	CAGTG	3 cut(s)	462, 480, 680
Cac8I	GCNNGC	3 cut(s)	28, 462, 553
Cfr13I	GGNCC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	117, 479
DpnII	GATC	2 cut(s)	115, 477
Eam1104I	CTCTTC	2 cut(s)	430, 648
EarI	CTCTTC	2 cut(s)	430, 648
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	664
FaiI	YATR	5 cut(s)	224, 344, 597, 599, 662
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	1 cut(s)	660
FauI	CCCGC	1 cut(s)	642
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	44, 78, 91, 395, 489, 611
FokI	GGATG	3 cut(s)	169, 262, 350
Fsp4HI	GCNGC	6 cut(s)	44, 78, 91, 395, 489, 611
FspBI	CTAG	2 cut(s)	294, 614
GluI	GCNGC	6 cut(s)	44, 78, 91, 395, 489, 611
GsaI	CCCAGC	1 cut(s)	695
HapII	CCGG	2 cut(s)	40, 153
Hin1II	CATG	1 cut(s)	664
HinfI	GANTC	2 cut(s)	68, 581
HpaII	CCGG	2 cut(s)	40, 153
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	586, 672
Hpy188III	TCNNGA	2 cut(s)	145, 294
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	3 cut(s)	142, 354, 658
HpyCH4III	ACNGT	2 cut(s)	474, 676
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	460, 488, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 99, 461, 505
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	115, 477
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	5 cut(s)	30, 102, 381, 500, 597
LweI	GCATC	3 cut(s)	147, 475, 598
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	2 cut(s)	294, 614
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	199, 435, 676
MalI	GATC	2 cut(s)	117, 479
MboI	GATC	2 cut(s)	115, 477
MboII	GAAGA	4 cut(s)	133, 417, 420, 665
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	5 cut(s)	57, 95, 265, 274, 527
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	45, 120, 229, 295, 328, 396
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	2 cut(s)	40, 153
MspR9I	CCNGG	3 cut(s)	40, 154, 209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	52, 99, 461, 505
NciI	CCSGG	2 cut(s)	40, 154
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	115, 477
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	199, 676
PciSI	GCTCTTC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	68, 581
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	6 cut(s)	45, 79, 92, 396, 490, 612
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	6 cut(s)	44, 78, 91, 395, 489, 611
Sau3AI	GATC	2 cut(s)	115, 477
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	40, 154, 209
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	147, 475, 598
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	57, 95, 265, 274, 527
SsiI	CCGC	5 cut(s)	78, 124, 191, 649, 695
SspMI	CTAG	2 cut(s)	294, 614
StyD4I	CCNGG	3 cut(s)	38, 152, 207
TaaI	ACNGT	2 cut(s)	474, 676
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	144
TasI	AATT	5 cut(s)	57, 95, 265, 274, 527
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	68, 581
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	3 cut(s)	462, 487, 687
TseFI	GTSAC	2 cut(s)	199, 676
TseI	GCWGC	5 cut(s)	43, 90, 394, 488, 610
Tsp45I	GTSAC	2 cut(s)	199, 676
TspDTI	ATGAA	2 cut(s)	651, 677
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	3 cut(s)	462, 487, 687
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	3 cut(s)	95, 265, 274
XbaI	TCTAGA	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	469
XspI	CTAG	2 cut(s)	294, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.